Wall clock time and date at job start Tue Mar 31 2020 03:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46937 * 2 1 4 4 C 1.46505 * 120.00128 * 266.44896 * 3 2 1 5 5 C 1.50698 * 109.46803 * 276.72968 * 4 3 2 6 6 H 1.08000 * 120.00286 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99942 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00360 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99871 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46643 * 90.00284 * 9 7 5 11 11 H 1.48495 * 109.47471 * 210.00299 * 9 7 5 12 12 H 1.48503 * 109.47133 * 330.00794 * 9 7 5 13 13 C 1.34773 * 119.99760 * 86.44833 * 3 2 1 14 14 O 1.21282 * 120.00398 * 5.46509 * 13 3 2 15 15 C 1.50708 * 119.99872 * 185.45887 * 13 3 2 16 16 C 1.53655 * 112.54065 * 292.70636 * 15 13 3 17 17 C 1.54896 * 100.67584 * 268.75965 * 16 15 13 18 18 C 1.51192 * 104.24090 * 333.64191 * 17 16 15 19 19 O 1.21277 * 124.71813 * 191.25065 * 18 17 16 20 20 N 1.35820 * 110.55605 * 11.21261 * 18 17 16 21 21 C 1.46844 * 138.49577 * 194.82574 * 20 18 17 22 22 C 1.54428 * 113.56107 * 164.33735 * 21 20 18 23 23 S 1.83554 * 112.61529 * 58.31060 * 15 13 3 24 24 H 1.09008 * 109.47031 * 184.91600 * 1 2 3 25 25 H 1.08997 * 109.47058 * 304.91553 * 1 2 3 26 26 H 1.08997 * 109.47290 * 64.91342 * 1 2 3 27 27 H 1.09005 * 109.46898 * 240.00031 * 2 1 3 28 28 H 1.08999 * 109.47216 * 120.00589 * 2 1 3 29 29 H 1.08998 * 109.47070 * 36.72557 * 4 3 2 30 30 H 1.09001 * 109.47006 * 156.73199 * 4 3 2 31 31 H 0.96999 * 120.00209 * 179.97438 * 8 7 5 32 32 H 1.08996 * 111.18852 * 26.62575 * 16 15 13 33 33 H 1.08998 * 111.18287 * 150.89488 * 16 15 13 34 34 H 1.09003 * 110.47357 * 92.31038 * 17 16 15 35 35 H 1.08998 * 110.47215 * 214.91411 * 17 16 15 36 36 H 1.08996 * 108.67495 * 43.26184 * 21 20 18 37 37 H 1.08997 * 108.67536 * 285.40880 * 21 20 18 38 38 H 1.09003 * 110.98677 * 224.41965 * 22 21 20 39 39 H 1.08997 * 110.98755 * 100.61562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3366 2.0457 -1.2663 5 6 3.7303 1.6664 -1.6961 6 1 4.3201 0.9977 -1.0868 7 6 4.2528 2.1740 -2.8668 8 7 5.4692 1.8435 -3.2417 9 14 3.2328 3.3312 -3.9204 10 1 3.4773 4.7328 -3.4950 11 1 3.6178 3.1721 -5.3457 12 1 1.7924 3.0087 -3.7577 13 6 2.1747 2.0406 1.1650 14 8 2.0069 1.4611 2.2171 15 6 2.5583 3.4980 1.1602 16 6 3.9813 3.7309 0.6292 17 6 4.7933 3.6666 1.9467 18 6 3.8047 4.0799 3.0134 19 8 4.0967 4.3449 4.1603 20 7 2.5445 4.1140 2.5083 21 6 1.2262 4.6461 2.8762 22 6 0.2277 4.6898 1.6989 23 16 1.3553 4.5416 0.2476 24 1 -0.3633 -1.0240 0.0881 25 1 -0.3633 0.5882 0.8427 26 1 -0.3634 0.4357 -0.9307 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6235 1.7339 -2.0295 30 1 2.2784 3.1261 -1.1343 31 1 5.8366 2.2002 -4.0655 32 1 4.2804 2.9384 -0.0567 33 1 4.0708 4.7100 0.1588 34 1 5.1468 2.6515 2.1276 35 1 5.6314 4.3627 1.9123 36 1 1.3535 5.6569 3.2635 37 1 0.8068 4.0237 3.6666 38 1 -0.3115 5.6369 1.6793 39 1 -0.4647 3.8491 1.7428 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535724607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:01 Heat of formation + Delta-G solvation = -59.848203 kcal Electronic energy + Delta-G solvation = -23877.497325 eV Core-core repulsion = 20525.472487 eV Total energy + Delta-G solvation = -3352.024838 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.15537 -40.30580 -37.87845 -37.14560 -35.10233 -34.62869 -32.42015 -30.66764 -29.77549 -28.89335 -25.33645 -24.58075 -24.45690 -23.02717 -21.27773 -20.03287 -19.07835 -18.92896 -18.14001 -17.55057 -16.95117 -16.70338 -16.47641 -16.05325 -15.67343 -15.35920 -15.09980 -14.77088 -14.71649 -14.57436 -14.31118 -14.07396 -13.81583 -13.58864 -13.24980 -13.17493 -12.92654 -12.66170 -12.55652 -12.41064 -12.20546 -12.03597 -11.86349 -11.74634 -11.57321 -11.19882 -11.04663 -10.73456 -9.93892 -9.53007 -8.95774 -8.27612 -6.32226 0.15738 0.82615 1.18717 1.42236 1.45630 1.48150 1.53005 1.64286 2.15003 2.36548 2.91805 3.07019 3.25496 3.30498 3.54840 3.81603 3.82699 4.13706 4.20246 4.35512 4.37612 4.45741 4.51406 4.57899 4.65839 4.72052 4.82094 4.90198 4.94429 4.96307 5.03068 5.16556 5.29556 5.45669 5.63788 5.79553 6.14807 6.49715 6.70691 6.80412 7.04316 7.31406 8.86714 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.007615 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.751040 B = 3676.142486 C = 4086.106958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.108 3.892 3 N -0.575 5.575 4 C 0.210 3.790 5 C -0.535 4.535 6 H 0.043 0.957 7 C 0.038 3.962 8 N -0.929 5.929 9 Si 0.913 3.087 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.241 1.241 13 C 0.526 3.474 14 O -0.572 6.572 15 C 0.154 3.846 16 C -0.127 4.127 17 C -0.138 4.138 18 C 0.547 3.453 19 O -0.558 6.558 20 N -0.607 5.607 21 C 0.114 3.886 22 C -0.075 4.075 23 S -0.235 6.235 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.269 0.731 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.139 0.861 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.161 0.839 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.308 5.733 4.283 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.305 5.305 4 C 0.088 3.912 5 C -0.573 4.573 6 H 0.061 0.939 7 C -0.163 4.163 8 N -0.567 5.567 9 Si 0.736 3.264 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.164 1.164 13 C 0.309 3.691 14 O -0.454 6.454 15 C -0.047 4.047 16 C -0.165 4.165 17 C -0.178 4.178 18 C 0.337 3.663 19 O -0.436 6.436 20 N -0.343 5.343 21 C -0.007 4.007 22 C -0.223 4.223 23 S -0.006 6.006 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.157 0.843 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.179 0.821 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.258 6.130 4.274 13.512 hybrid contribution 0.161 -0.321 0.397 0.535 sum -11.097 5.809 4.671 13.368 Atomic orbital electron populations 1.22013 0.93953 1.03135 1.01795 1.21516 0.95541 0.81616 1.02786 1.47823 1.62143 1.14166 1.06325 1.19985 0.95259 0.94287 0.81659 1.21328 0.99085 1.29563 1.07363 0.93856 1.25496 0.95415 0.97280 0.98103 1.70004 1.16916 1.45429 1.24364 0.86203 0.81185 0.80571 0.78423 1.18381 1.21243 1.16390 1.20094 0.77354 0.87710 0.83944 1.90638 1.53844 1.69023 1.31871 1.23993 1.01276 0.92568 0.86818 1.23088 0.87951 1.07422 0.98054 1.22466 0.98360 1.05529 0.91470 1.21450 0.82067 0.74640 0.88147 1.90651 1.81383 1.51685 1.19843 1.49686 1.09479 1.56944 1.18232 1.21766 0.80234 1.01241 0.97470 1.24909 0.98090 1.09482 0.89805 1.88506 1.26455 1.64152 1.21470 0.89508 0.93759 0.91846 0.89615 0.91772 0.93839 0.92719 0.92166 0.85677 0.87325 0.87740 0.84343 0.87818 0.90478 0.82092 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 10.22 71.98 0.74 -3.24 16 2 C 0.11 3.59 6.15 86.38 0.53 4.12 16 3 N -0.58 -21.79 2.47 -826.13 -2.04 -23.82 16 4 C 0.21 8.43 3.50 85.63 0.30 8.73 16 5 C -0.54 -25.78 7.31 25.60 0.19 -25.59 16 6 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 7 C 0.04 1.90 5.47 84.66 0.46 2.36 16 8 N -0.93 -50.98 13.96 21.45 0.30 -50.68 16 9 Si 0.91 37.52 27.47 68.60 1.88 39.41 16 10 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 11 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.24 -9.07 6.54 99.48 0.65 -8.42 16 13 C 0.53 20.32 6.71 87.66 0.59 20.91 16 14 O -0.57 -24.71 16.28 -3.04 -0.05 -24.76 16 15 C 0.15 5.26 0.31 44.14 0.01 5.27 16 16 C -0.13 -4.39 5.46 31.46 0.17 -4.22 16 17 C -0.14 -4.42 6.81 30.65 0.21 -4.21 16 18 C 0.55 19.74 8.38 87.65 0.73 20.48 16 19 O -0.56 -23.04 18.03 -3.02 -0.05 -23.10 16 20 N -0.61 -19.94 2.96 -777.04 -2.30 -22.24 16 21 C 0.11 2.82 7.25 86.80 0.63 3.45 16 22 C -0.08 -1.51 7.56 72.47 0.55 -0.96 16 23 S -0.23 -6.81 19.53 -56.49 -1.10 -7.92 16 24 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 2.85 8.05 -2.38 -0.02 2.83 16 28 H 0.06 2.25 7.46 -2.39 -0.02 2.23 16 29 H 0.04 1.71 7.18 -2.39 -0.02 1.69 16 30 H 0.06 2.13 3.16 -13.08 -0.04 2.09 16 31 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.13 5.14 4.42 -2.39 -0.01 5.13 16 33 H 0.11 3.46 7.87 -2.39 -0.02 3.44 16 34 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -65.28 324.34 2.72 -62.56 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.97 Total: 23.43 kcal Atomic # 6 Polarization: 22.00 SS G_CDS: 5.11 Total: 27.11 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.04 Total: -96.74 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.10 Total: -47.85 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 1.88 Total: 39.41 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -1.10 Total: -7.92 kcal Total: -65.28 2.72 -62.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535724607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.711 kcal (2) G-P(sol) polarization free energy of solvation -65.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds