Wall clock time and date at job start Tue Mar 31 2020 03:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46841 * 2 1 4 4 C 1.46502 * 119.99925 * 95.46368 * 3 2 1 5 5 C 1.50701 * 109.46607 * 275.89839 * 4 3 2 6 6 H 1.07996 * 120.00417 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99663 * 180.27240 * 5 4 3 8 8 N 1.31511 * 119.99827 * 359.73077 * 7 5 4 9 9 Si 1.86800 * 119.99909 * 179.72420 * 7 5 4 10 10 H 1.48501 * 109.46778 * 90.00199 * 9 7 5 11 11 H 1.48496 * 109.47061 * 210.00357 * 9 7 5 12 12 H 1.48495 * 109.47182 * 330.00575 * 9 7 5 13 13 C 1.34776 * 120.00138 * 275.45718 * 3 2 1 14 14 O 1.21285 * 119.99655 * 4.87080 * 13 3 2 15 15 C 1.50697 * 120.00205 * 184.86763 * 13 3 2 16 16 C 1.53653 * 112.54097 * 59.94595 * 15 13 3 17 17 C 1.55900 * 100.18938 * 91.56541 * 16 15 13 18 18 C 1.51125 * 104.54381 * 25.72745 * 17 16 15 19 19 O 1.21281 * 124.73073 * 169.16118 * 18 17 16 20 20 N 1.35819 * 110.54138 * 349.13951 * 18 17 16 21 21 C 1.46845 * 138.49304 * 165.20566 * 20 18 17 22 22 C 1.54428 * 113.56237 * 195.66837 * 21 20 18 23 23 S 1.83552 * 112.61780 * 294.33806 * 15 13 3 24 24 H 1.08996 * 109.47133 * 304.44220 * 1 2 3 25 25 H 1.09001 * 109.46973 * 64.44309 * 1 2 3 26 26 H 1.08993 * 109.46829 * 184.44146 * 1 2 3 27 27 H 1.09004 * 109.47037 * 240.00061 * 2 1 3 28 28 H 1.08991 * 109.47098 * 119.99777 * 2 1 3 29 29 H 1.09000 * 109.46849 * 155.89965 * 4 3 2 30 30 H 1.08998 * 109.46889 * 35.90076 * 4 3 2 31 31 H 0.97003 * 119.99675 * 179.97438 * 8 7 5 32 32 H 1.09003 * 111.18487 * 208.38458 * 16 15 13 33 33 H 1.09004 * 111.18489 * 332.69339 * 16 15 13 34 34 H 1.09010 * 109.98707 * 267.11834 * 17 16 15 35 35 H 1.08998 * 110.80183 * 144.75070 * 17 16 15 36 36 H 1.09000 * 108.67355 * 74.59518 * 21 20 18 37 37 H 1.08999 * 108.68017 * 316.74645 * 21 20 18 38 38 H 1.09004 * 110.98795 * 259.38773 * 22 21 20 39 39 H 1.08996 * 111.02080 * 135.59808 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3763 2.0316 1.2630 5 6 1.1370 2.6019 1.9032 6 1 0.1785 2.4907 1.4181 7 6 1.2275 3.2702 3.1059 8 7 2.3946 3.4053 3.6968 9 14 -0.3075 3.9839 3.8957 10 1 -0.9216 2.9693 4.7894 11 1 0.0566 5.1859 4.6878 12 1 -1.2778 4.3635 2.8376 13 6 2.1383 2.0536 -1.1619 14 8 1.7595 1.5478 -2.1971 15 6 2.7429 3.4339 -1.1748 16 6 4.1848 3.4504 -0.6441 17 6 4.9710 3.2513 -1.9755 18 6 4.0479 3.7876 -3.0452 19 8 4.3672 3.9837 -4.1987 20 7 2.8107 4.0191 -2.5348 21 6 1.5839 4.7351 -2.9070 22 6 0.6121 4.9499 -1.7262 23 16 1.7161 4.6628 -0.2777 24 1 -0.3633 0.5812 0.8475 25 1 -0.3633 0.4434 -0.9271 26 1 -0.3633 -1.0245 0.0796 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.0876 2.8345 1.0693 30 1 2.8278 1.3001 1.9331 31 1 2.4583 3.8757 4.5427 32 1 4.4290 4.4141 -0.1971 33 1 4.3541 2.6370 0.0615 34 1 5.1669 2.1912 -2.1376 35 1 5.9050 3.8129 -1.9612 36 1 1.0702 4.1673 -3.6829 37 1 1.8576 5.7079 -3.3153 38 1 -0.1983 4.2213 -1.7500 39 1 0.2199 5.9669 -1.7227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535724612.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:05 Heat of formation + Delta-G solvation = -35.797456 kcal Electronic energy + Delta-G solvation = -23887.995882 eV Core-core repulsion = 20537.013963 eV Total energy + Delta-G solvation = -3350.981919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68837 -38.71612 -36.41386 -35.40366 -33.77667 -32.66494 -30.71532 -29.37601 -27.67825 -27.11626 -24.19437 -23.19257 -22.78963 -21.70173 -19.88889 -18.59692 -17.42055 -16.76632 -16.48913 -15.86161 -15.56198 -15.04898 -14.97928 -14.47197 -14.03639 -14.01464 -13.64945 -13.33855 -13.29432 -12.95460 -12.70976 -12.36774 -12.27492 -12.10655 -11.69370 -11.50939 -11.38874 -11.24487 -11.01227 -10.89486 -10.72864 -10.52048 -10.13121 -10.06903 -9.71128 -9.57429 -9.48838 -8.56910 -8.39512 -7.86458 -7.13590 -6.13133 -4.10249 1.80348 2.32144 2.59506 2.81949 3.24623 3.30592 3.32742 3.37901 3.70830 4.22427 4.37714 4.46696 4.74068 4.89391 4.95681 5.01198 5.23617 5.33278 5.56008 5.58267 5.64896 5.68346 5.82250 5.84931 5.94187 5.95918 6.01357 6.19675 6.22808 6.46201 6.65667 6.82716 7.05686 7.18520 7.41739 7.81959 8.05283 8.15859 8.19054 8.67960 8.89669 9.49257 10.95210 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.007154 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.419819 B = 3912.791001 C = 4349.825643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 N -0.581 5.581 4 C 0.223 3.777 5 C -0.500 4.500 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.525 3.475 14 O -0.554 6.554 15 C 0.142 3.858 16 C -0.108 4.108 17 C -0.146 4.146 18 C 0.549 3.451 19 O -0.529 6.529 20 N -0.603 5.603 21 C 0.130 3.870 22 C -0.113 4.113 23 S -0.142 6.142 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 0.297 -5.678 5.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.312 5.312 4 C 0.103 3.897 5 C -0.540 4.540 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.307 3.693 14 O -0.434 6.434 15 C -0.058 4.058 16 C -0.147 4.147 17 C -0.187 4.187 18 C 0.338 3.662 19 O -0.405 6.405 20 N -0.340 5.340 21 C 0.008 3.992 22 C -0.262 4.262 23 S 0.089 5.911 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.119 0.794 -5.663 5.827 hybrid contribution -1.138 0.067 -0.353 1.193 sum -0.018 0.861 -6.015 6.076 Atomic orbital electron populations 1.22132 0.96233 1.01068 1.02943 1.21239 0.94734 0.82464 1.01457 1.48140 1.62129 1.13167 1.07732 1.19859 0.97417 0.93422 0.78978 1.21254 0.93824 1.34334 1.04572 0.91793 1.24757 0.95790 0.95985 0.96854 1.69886 1.23184 1.42794 1.17687 0.86648 0.83619 0.78749 0.79411 1.20856 1.21300 1.19795 1.19819 0.79793 0.85479 0.84162 1.90641 1.51129 1.68772 1.32824 1.24101 1.00466 0.94913 0.86275 1.22979 0.88661 1.06366 0.96675 1.22614 0.98974 1.04151 0.92949 1.21004 0.80699 0.76134 0.88349 1.90681 1.78061 1.53465 1.18273 1.49602 1.13777 1.53223 1.17428 1.21414 0.83988 0.97002 0.96832 1.24702 1.00370 1.06335 0.94775 1.89483 1.36917 1.49028 1.15677 0.90794 0.93051 0.92985 0.91845 0.90507 0.93409 0.94668 0.92789 0.87767 0.86809 0.87494 0.86868 0.90693 0.90281 0.88326 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.20 37.16 0.38 -2.39 16 2 C 0.12 2.13 6.07 -4.04 -0.02 2.11 16 3 N -0.58 -11.24 2.45 -175.06 -0.43 -11.67 16 4 C 0.22 4.74 4.09 -5.19 -0.02 4.72 16 5 C -0.50 -11.77 7.06 -34.44 -0.24 -12.02 16 6 H 0.06 1.56 6.69 -52.49 -0.35 1.21 16 7 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.90 -23.13 13.29 55.43 0.74 -22.39 16 9 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.53 10.34 6.71 -10.99 -0.07 10.27 16 14 O -0.55 -12.09 16.31 5.55 0.09 -12.00 16 15 C 0.14 2.53 0.30 -67.80 -0.02 2.51 16 16 C -0.11 -1.65 5.14 -24.84 -0.13 -1.78 16 17 C -0.15 -2.00 6.83 -26.13 -0.18 -2.18 16 18 C 0.55 9.62 8.39 -10.30 -0.09 9.54 16 19 O -0.53 -10.69 18.03 5.56 0.10 -10.59 16 20 N -0.60 -10.46 2.91 -159.76 -0.47 -10.92 16 21 C 0.13 1.97 7.25 -3.11 -0.02 1.94 16 22 C -0.11 -1.65 7.55 37.91 0.29 -1.37 16 23 S -0.14 -2.60 18.94 -107.50 -2.04 -4.64 16 24 H 0.07 1.36 6.64 -51.93 -0.34 1.01 16 25 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.06 7.67 -51.93 -0.40 0.66 16 28 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 29 H 0.05 1.02 3.67 -51.93 -0.19 0.83 16 30 H 0.04 0.79 7.95 -51.93 -0.41 0.38 16 31 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.10 1.53 7.88 -51.93 -0.41 1.12 16 33 H 0.11 1.76 5.97 -51.93 -0.31 1.45 16 34 H 0.11 1.37 8.14 -51.92 -0.42 0.95 16 35 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -29.91 325.58 -7.69 -37.60 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.34 Total: 1.86 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -0.23 Total: 12.94 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.16 Total: -44.98 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.19 Total: -22.59 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.04 Total: -4.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.91 -7.69 -37.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535724612.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.805 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds