Wall clock time and date at job start Tue Mar 31 2020 03:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46841 * 2 1 4 4 C 1.46502 * 119.99925 * 95.46368 * 3 2 1 5 5 C 1.50701 * 109.46607 * 275.89839 * 4 3 2 6 6 H 1.07996 * 120.00417 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99663 * 180.27240 * 5 4 3 8 8 N 1.31511 * 119.99827 * 359.73077 * 7 5 4 9 9 Si 1.86800 * 119.99909 * 179.72420 * 7 5 4 10 10 H 1.48501 * 109.46778 * 90.00199 * 9 7 5 11 11 H 1.48496 * 109.47061 * 210.00357 * 9 7 5 12 12 H 1.48495 * 109.47182 * 330.00575 * 9 7 5 13 13 C 1.34776 * 120.00138 * 275.45718 * 3 2 1 14 14 O 1.21285 * 119.99655 * 4.87080 * 13 3 2 15 15 C 1.50697 * 120.00205 * 184.86763 * 13 3 2 16 16 C 1.53653 * 112.54097 * 59.94595 * 15 13 3 17 17 C 1.55900 * 100.18938 * 91.56541 * 16 15 13 18 18 C 1.51125 * 104.54381 * 25.72745 * 17 16 15 19 19 O 1.21281 * 124.73073 * 169.16118 * 18 17 16 20 20 N 1.35819 * 110.54138 * 349.13951 * 18 17 16 21 21 C 1.46845 * 138.49304 * 165.20566 * 20 18 17 22 22 C 1.54428 * 113.56237 * 195.66837 * 21 20 18 23 23 S 1.83552 * 112.61780 * 294.33806 * 15 13 3 24 24 H 1.08996 * 109.47133 * 304.44220 * 1 2 3 25 25 H 1.09001 * 109.46973 * 64.44309 * 1 2 3 26 26 H 1.08993 * 109.46829 * 184.44146 * 1 2 3 27 27 H 1.09004 * 109.47037 * 240.00061 * 2 1 3 28 28 H 1.08991 * 109.47098 * 119.99777 * 2 1 3 29 29 H 1.09000 * 109.46849 * 155.89965 * 4 3 2 30 30 H 1.08998 * 109.46889 * 35.90076 * 4 3 2 31 31 H 0.97003 * 119.99675 * 179.97438 * 8 7 5 32 32 H 1.09003 * 111.18487 * 208.38458 * 16 15 13 33 33 H 1.09004 * 111.18489 * 332.69339 * 16 15 13 34 34 H 1.09010 * 109.98707 * 267.11834 * 17 16 15 35 35 H 1.08998 * 110.80183 * 144.75070 * 17 16 15 36 36 H 1.09000 * 108.67355 * 74.59518 * 21 20 18 37 37 H 1.08999 * 108.68017 * 316.74645 * 21 20 18 38 38 H 1.09004 * 110.98795 * 259.38773 * 22 21 20 39 39 H 1.08996 * 111.02080 * 135.59808 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3763 2.0316 1.2630 5 6 1.1370 2.6019 1.9032 6 1 0.1785 2.4907 1.4181 7 6 1.2275 3.2702 3.1059 8 7 2.3946 3.4053 3.6968 9 14 -0.3075 3.9839 3.8957 10 1 -0.9216 2.9693 4.7894 11 1 0.0566 5.1859 4.6878 12 1 -1.2778 4.3635 2.8376 13 6 2.1383 2.0536 -1.1619 14 8 1.7595 1.5478 -2.1971 15 6 2.7429 3.4339 -1.1748 16 6 4.1848 3.4504 -0.6441 17 6 4.9710 3.2513 -1.9755 18 6 4.0479 3.7876 -3.0452 19 8 4.3672 3.9837 -4.1987 20 7 2.8107 4.0191 -2.5348 21 6 1.5839 4.7351 -2.9070 22 6 0.6121 4.9499 -1.7262 23 16 1.7161 4.6628 -0.2777 24 1 -0.3633 0.5812 0.8475 25 1 -0.3633 0.4434 -0.9271 26 1 -0.3633 -1.0245 0.0796 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.0876 2.8345 1.0693 30 1 2.8278 1.3001 1.9331 31 1 2.4583 3.8757 4.5427 32 1 4.4290 4.4141 -0.1971 33 1 4.3541 2.6370 0.0615 34 1 5.1669 2.1912 -2.1376 35 1 5.9050 3.8129 -1.9612 36 1 1.0702 4.1673 -3.6829 37 1 1.8576 5.7079 -3.3153 38 1 -0.1983 4.2213 -1.7500 39 1 0.2199 5.9669 -1.7227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535724612.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:04 Heat of formation + Delta-G solvation = -53.781365 kcal Electronic energy + Delta-G solvation = -23888.775723 eV Core-core repulsion = 20537.013963 eV Total energy + Delta-G solvation = -3351.761760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.08382 -40.21361 -37.82202 -37.02086 -35.00815 -34.48393 -32.18136 -30.62278 -29.18812 -28.72458 -25.57272 -24.65391 -24.35978 -23.00918 -21.28064 -19.99385 -18.85516 -18.51692 -17.99740 -17.36958 -16.92661 -16.56166 -16.31396 -16.16257 -15.47374 -15.41167 -14.99361 -14.69411 -14.54144 -14.43647 -14.18081 -13.94137 -13.70427 -13.58988 -13.02738 -13.01239 -12.89795 -12.72082 -12.51614 -12.43895 -12.13811 -12.09284 -11.72428 -11.52975 -11.39519 -11.13327 -10.89394 -10.38826 -9.85587 -9.49407 -8.59903 -8.02373 -6.01021 0.39681 1.02714 1.24688 1.45153 1.50504 1.54289 1.56134 1.81417 2.25259 2.54286 2.95249 3.20755 3.33818 3.43473 3.54820 3.76514 3.83963 4.17749 4.25477 4.39671 4.46019 4.46784 4.59328 4.60233 4.64930 4.77578 4.82772 4.83563 4.96395 5.01358 5.12007 5.27586 5.44812 5.77210 5.88462 5.93718 6.23297 6.53559 6.84657 6.94818 7.18349 7.59721 9.05010 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.007154 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.419819 B = 3912.791001 C = 4349.825643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.116 3.884 3 N -0.581 5.581 4 C 0.234 3.766 5 C -0.489 4.489 6 H 0.053 0.947 7 C 0.034 3.966 8 N -0.920 5.920 9 Si 0.928 3.072 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.274 1.274 13 C 0.524 3.476 14 O -0.578 6.578 15 C 0.147 3.853 16 C -0.105 4.105 17 C -0.134 4.134 18 C 0.541 3.459 19 O -0.561 6.561 20 N -0.608 5.608 21 C 0.122 3.878 22 C -0.093 4.093 23 S -0.196 6.196 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 0.370 -5.927 6.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.006 4.006 3 N -0.311 5.311 4 C 0.113 3.887 5 C -0.529 4.529 6 H 0.071 0.929 7 C -0.166 4.166 8 N -0.562 5.562 9 Si 0.756 3.244 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.199 1.199 13 C 0.307 3.693 14 O -0.460 6.460 15 C -0.053 4.053 16 C -0.143 4.143 17 C -0.174 4.174 18 C 0.331 3.669 19 O -0.440 6.440 20 N -0.344 5.344 21 C 0.000 4.000 22 C -0.242 4.242 23 S 0.034 5.966 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.164 0.836 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.153 0.855 -5.892 6.064 hybrid contribution -1.234 0.008 -0.344 1.281 sum -0.081 0.863 -6.236 6.296 Atomic orbital electron populations 1.22028 0.95815 1.02477 1.01073 1.21452 0.95066 0.81581 1.02485 1.48149 1.61951 1.13915 1.07078 1.19624 0.96529 0.93173 0.79336 1.21311 0.94028 1.33396 1.04140 0.92925 1.25184 0.97226 0.96654 0.97511 1.69950 1.24243 1.43959 1.18007 0.86004 0.81670 0.78047 0.78637 1.20782 1.21666 1.19865 1.20144 0.79356 0.86115 0.83719 1.90626 1.52220 1.69645 1.33472 1.24037 1.01388 0.93365 0.86557 1.22980 0.87312 1.06668 0.97367 1.22679 0.99183 1.05210 0.90326 1.21653 0.81093 0.75574 0.88559 1.90662 1.78634 1.54978 1.19705 1.49833 1.14370 1.53040 1.17204 1.21606 0.83626 0.97898 0.96856 1.24786 0.99192 1.08151 0.92039 1.89566 1.38667 1.49453 1.18886 0.92721 0.94674 0.89953 0.91172 0.89076 0.93003 0.95741 0.93055 0.87061 0.87058 0.86340 0.83559 0.91014 0.88087 0.88941 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 10.20 71.98 0.73 -4.30 16 2 C 0.12 3.86 6.07 86.38 0.52 4.39 16 3 N -0.58 -22.02 2.45 -826.14 -2.02 -24.04 16 4 C 0.23 9.80 4.09 85.63 0.35 10.15 16 5 C -0.49 -22.79 7.06 25.60 0.18 -22.61 16 6 H 0.05 2.55 6.69 -2.91 -0.02 2.53 16 7 C 0.03 1.64 5.46 84.66 0.46 2.10 16 8 N -0.92 -47.19 13.29 21.45 0.28 -46.90 16 9 Si 0.93 40.44 29.54 68.60 2.03 42.47 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 C 0.52 20.19 6.71 87.66 0.59 20.77 16 14 O -0.58 -24.85 16.31 -3.04 -0.05 -24.90 16 15 C 0.15 5.04 0.30 44.13 0.01 5.05 16 16 C -0.10 -3.03 5.14 31.82 0.16 -2.86 16 17 C -0.13 -3.37 6.83 30.99 0.21 -3.16 16 18 C 0.54 18.15 8.39 87.63 0.73 18.89 16 19 O -0.56 -22.11 18.03 -3.03 -0.05 -22.17 16 20 N -0.61 -20.28 2.91 -777.14 -2.26 -22.55 16 21 C 0.12 3.50 7.25 86.80 0.63 4.13 16 22 C -0.09 -2.57 7.55 72.47 0.55 -2.03 16 23 S -0.20 -7.01 18.94 -56.49 -1.07 -8.08 16 24 H 0.05 1.97 6.64 -2.39 -0.02 1.95 16 25 H 0.03 1.23 8.10 -2.39 -0.02 1.21 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.07 2.25 7.67 -2.38 -0.02 2.23 16 28 H 0.09 2.75 7.89 -2.39 -0.02 2.73 16 29 H 0.05 2.18 3.67 -2.39 -0.01 2.18 16 30 H 0.02 1.09 7.95 -2.39 -0.02 1.07 16 31 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 32 H 0.11 3.08 7.88 -2.39 -0.02 3.06 16 33 H 0.11 3.29 5.97 -2.38 -0.01 3.28 16 34 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 35 H 0.15 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.15 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -63.01 325.58 3.05 -59.96 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.06 Total: 15.68 kcal Atomic # 6 Polarization: 25.38 SS G_CDS: 5.14 Total: 30.52 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -4.00 Total: -93.49 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -0.10 Total: -47.07 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: -7.01 SS G_CDS: -1.07 Total: -8.08 kcal Total: -63.01 3.05 -59.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535724612.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.182 kcal (2) G-P(sol) polarization free energy of solvation -63.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds