Wall clock time and date at job start Tue Mar 31 2020 04:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.31087 * 120.00498 * 2 1 4 4 N 1.35582 * 125.81721 * 179.97438 * 3 2 1 5 5 H 0.97007 * 122.96881 * 359.97438 * 4 3 2 6 6 N 1.37802 * 114.05404 * 179.97438 * 4 3 2 7 7 C 1.27567 * 116.54487 * 0.02562 * 6 4 3 8 8 C 1.50705 * 124.80778 * 180.02562 * 7 6 4 9 9 C 1.50694 * 109.47478 * 89.97039 * 8 7 6 10 10 O 1.21281 * 119.99833 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00394 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00325 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47393 * 89.99832 * 12 11 9 14 14 H 1.07999 * 119.99827 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00350 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99914 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00073 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46973 * 60.00407 * 17 15 13 19 19 H 1.48504 * 109.46700 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47396 * 300.00009 * 17 15 13 21 21 C 1.46505 * 119.99684 * 359.97438 * 11 9 8 22 22 C 1.52997 * 109.46921 * 120.00087 * 21 11 9 23 23 C 1.52999 * 109.47203 * 240.00407 * 21 11 9 24 24 S 1.75878 * 110.38385 * 359.76535 * 7 6 4 25 25 H 1.09002 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46813 * 60.00098 * 1 2 3 27 27 H 1.09004 * 109.47041 * 300.00225 * 1 2 3 28 28 H 1.08997 * 109.47252 * 209.97454 * 8 7 6 29 29 H 1.09002 * 109.46943 * 329.96822 * 8 7 6 30 30 H 1.09002 * 109.47354 * 209.99904 * 12 11 9 31 31 H 1.08992 * 109.47104 * 329.99453 * 12 11 9 32 32 H 0.96993 * 120.00450 * 179.97438 * 16 15 13 33 33 H 1.09005 * 109.46895 * 0.02562 * 21 11 9 34 34 H 1.08997 * 109.47331 * 60.00516 * 22 21 11 35 35 H 1.09007 * 109.47231 * 180.02562 * 22 21 11 36 36 H 1.09001 * 109.47150 * 299.99821 * 22 21 11 37 37 H 1.08995 * 109.47089 * 59.99983 * 23 21 11 38 38 H 1.09001 * 109.47303 * 180.02562 * 23 21 11 39 39 H 1.09001 * 109.46650 * 299.99475 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1205 1.1352 0.0000 4 7 3.4694 1.2725 0.0005 5 1 4.0770 0.5163 0.0013 6 7 3.9007 2.5813 -0.0002 7 6 2.9953 3.4799 -0.0007 8 6 3.2565 4.9642 -0.0020 9 6 3.3438 5.4576 -1.4232 10 8 3.2079 4.6805 -2.3443 11 7 3.5740 6.7623 -1.6706 12 6 3.6584 7.2421 -3.0522 13 6 2.2881 7.6536 -3.5257 14 1 1.4394 7.5667 -2.8635 15 6 2.1181 8.1418 -4.8039 16 7 3.1517 8.2480 -5.6101 17 14 0.4195 8.6511 -5.3909 18 1 -0.1004 9.7360 -4.5205 19 1 0.5051 9.1375 -6.7914 20 1 -0.4966 7.4840 -5.3280 21 6 3.7387 7.7010 -0.5579 22 6 5.1218 8.3502 -0.6389 23 6 2.6612 8.7840 -0.6404 24 16 1.3991 2.7414 -0.0071 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 2.4429 5.4767 0.5112 29 1 4.1959 5.1682 0.5119 30 1 4.3312 8.0984 -3.0991 31 1 4.0394 6.4454 -3.6909 32 1 3.0322 8.5911 -6.5094 33 1 3.6441 7.1650 0.3866 34 1 5.2168 8.8861 -1.5833 35 1 5.2446 9.0483 0.1893 36 1 5.8894 7.5786 -0.5801 37 1 1.6760 8.3214 -0.5827 38 1 2.7840 9.4826 0.1872 39 1 2.7563 9.3199 -1.5848 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544741843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:50 Heat of formation + Delta-G solvation = 37.357590 kcal Electronic energy + Delta-G solvation = -22057.333201 eV Core-core repulsion = 18741.816273 eV Total energy + Delta-G solvation = -3315.516927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05367 -39.18664 -36.20361 -35.66765 -33.08975 -32.59183 -30.92731 -29.63081 -27.33879 -26.80359 -26.44342 -23.53994 -22.94133 -21.53415 -20.41626 -19.08638 -18.06360 -17.09515 -16.96441 -16.48906 -15.53969 -15.38485 -15.19293 -14.49629 -14.41991 -13.84284 -13.65431 -13.48888 -13.26881 -13.18867 -12.93137 -12.37470 -12.35794 -11.91869 -11.75635 -11.62395 -11.22888 -11.14042 -10.96910 -10.88937 -10.63348 -10.49510 -10.41873 -10.06060 -9.70719 -9.59175 -9.50161 -9.05500 -8.43219 -7.83975 -7.74141 -6.05059 -4.08605 0.87478 1.28791 1.37425 1.94568 2.33215 3.24270 3.30743 3.35980 3.39380 3.77174 4.13852 4.43707 4.71840 4.91086 4.98137 5.16492 5.26814 5.29633 5.33984 5.39386 5.49919 5.53446 5.58765 5.65829 5.96559 6.10259 6.21102 6.32362 6.54874 6.75969 6.91704 7.04117 7.11921 7.43023 7.49116 7.69890 7.90912 8.22188 8.32183 8.84460 8.99547 9.55477 11.03153 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.004459 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.539071 B = 6278.306284 C = 7271.273972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.569 5.569 3 C 0.344 3.656 4 N -0.517 5.517 5 H 0.446 0.554 6 N -0.212 5.212 7 C 0.112 3.888 8 C -0.066 4.066 9 C 0.510 3.490 10 O -0.528 6.528 11 N -0.588 5.588 12 C 0.247 3.753 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.130 3.870 22 C -0.163 4.163 23 C -0.158 4.158 24 S -0.004 6.004 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 -5.577 15.980 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.304 5.304 3 C -0.045 4.045 4 N -0.252 5.252 5 H 0.294 0.706 6 N -0.025 5.025 7 C -0.191 4.191 8 C -0.110 4.110 9 C 0.294 3.706 10 O -0.405 6.405 11 N -0.320 5.320 12 C 0.129 3.871 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.026 3.974 22 C -0.221 4.221 23 C -0.216 4.216 24 S 0.224 5.776 25 H 0.105 0.895 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.413 -6.570 15.272 16.630 hybrid contribution -0.633 0.234 -0.492 0.835 sum -1.046 -6.336 14.779 16.114 Atomic orbital electron populations 1.22233 0.85414 1.03114 1.00924 1.71815 1.09851 1.18013 1.30682 1.25373 0.89135 0.93249 0.96717 1.45571 1.02549 1.04347 1.72753 0.70622 1.73509 1.24556 0.88428 1.15974 1.26707 0.91283 0.99340 1.01796 1.20442 1.06065 0.85137 0.99398 1.19761 0.78674 0.83193 0.89020 1.90738 1.49474 1.54602 1.45658 1.48305 1.68735 1.05641 1.09310 1.19271 0.97411 0.95398 0.75067 1.21377 0.93979 1.42303 0.98309 0.92346 1.24912 0.96830 0.95852 0.96457 1.69913 1.29718 1.46146 1.07612 0.86621 0.84579 0.78861 0.77746 1.20236 1.21269 1.20241 1.21065 0.95644 0.91406 0.89292 1.22166 0.96243 1.00805 1.02879 1.22150 0.98186 0.98241 1.03026 1.86276 1.09021 0.99048 1.83270 0.89541 0.92473 0.92715 0.86246 0.85924 0.94561 0.94005 0.92711 0.90735 0.91197 0.92139 0.92780 0.92642 0.93119 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.44 59.85 0.62 1.02 16 2 N -0.57 -8.06 11.06 -68.18 -0.75 -8.81 16 3 C 0.34 4.96 8.43 -89.39 -0.75 4.20 16 4 N -0.52 -7.05 6.93 30.42 0.21 -6.84 16 5 H 0.45 4.94 8.96 -184.29 -1.65 3.29 16 6 N -0.21 -3.14 11.96 32.98 0.39 -2.75 16 7 C 0.11 1.64 6.08 -14.05 -0.09 1.56 16 8 C -0.07 -0.88 4.62 -29.04 -0.13 -1.01 16 9 C 0.51 9.78 7.67 -10.99 -0.08 9.70 16 10 O -0.53 -12.75 15.61 5.56 0.09 -12.67 16 11 N -0.59 -11.32 2.39 -167.48 -0.40 -11.72 16 12 C 0.25 6.06 4.60 -5.20 -0.02 6.04 16 13 C -0.52 -13.89 7.83 -34.44 -0.27 -14.16 16 14 H 0.06 1.55 7.62 -52.49 -0.40 1.15 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.13 1.87 3.17 -67.93 -0.22 1.66 16 22 C -0.16 -2.13 9.17 37.16 0.34 -1.79 16 23 C -0.16 -2.34 8.47 37.16 0.31 -2.03 16 24 S 0.00 -0.06 22.42 -107.50 -2.41 -2.47 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.12 1.25 7.79 -51.93 -0.40 0.84 16 29 H 0.12 1.27 7.79 -51.93 -0.40 0.86 16 30 H 0.04 0.90 6.43 -51.93 -0.33 0.57 16 31 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.07 0.81 5.77 -51.93 -0.30 0.51 16 34 H 0.07 1.08 6.66 -51.93 -0.35 0.73 16 35 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -33.11 341.10 -9.08 -42.19 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.68 Total: 0.00 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.38 Total: 6.78 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.19 Total: -55.28 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.41 Total: -2.47 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.11 -9.08 -42.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544741843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.543 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds