Wall clock time and date at job start Tue Mar 31 2020 04:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.31087 * 120.00498 * 2 1 4 4 N 1.35582 * 125.81721 * 179.97438 * 3 2 1 5 5 H 0.97007 * 122.96881 * 359.97438 * 4 3 2 6 6 N 1.37802 * 114.05404 * 179.97438 * 4 3 2 7 7 C 1.27567 * 116.54487 * 0.02562 * 6 4 3 8 8 C 1.50705 * 124.80778 * 180.02562 * 7 6 4 9 9 C 1.50694 * 109.47478 * 89.97039 * 8 7 6 10 10 O 1.21281 * 119.99833 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00394 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00325 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47393 * 89.99832 * 12 11 9 14 14 H 1.07999 * 119.99827 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00350 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99914 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00073 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46973 * 60.00407 * 17 15 13 19 19 H 1.48504 * 109.46700 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47396 * 300.00009 * 17 15 13 21 21 C 1.46505 * 119.99684 * 359.97438 * 11 9 8 22 22 C 1.52997 * 109.46921 * 120.00087 * 21 11 9 23 23 C 1.52999 * 109.47203 * 240.00407 * 21 11 9 24 24 S 1.75878 * 110.38385 * 359.76535 * 7 6 4 25 25 H 1.09002 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46813 * 60.00098 * 1 2 3 27 27 H 1.09004 * 109.47041 * 300.00225 * 1 2 3 28 28 H 1.08997 * 109.47252 * 209.97454 * 8 7 6 29 29 H 1.09002 * 109.46943 * 329.96822 * 8 7 6 30 30 H 1.09002 * 109.47354 * 209.99904 * 12 11 9 31 31 H 1.08992 * 109.47104 * 329.99453 * 12 11 9 32 32 H 0.96993 * 120.00450 * 179.97438 * 16 15 13 33 33 H 1.09005 * 109.46895 * 0.02562 * 21 11 9 34 34 H 1.08997 * 109.47331 * 60.00516 * 22 21 11 35 35 H 1.09007 * 109.47231 * 180.02562 * 22 21 11 36 36 H 1.09001 * 109.47150 * 299.99821 * 22 21 11 37 37 H 1.08995 * 109.47089 * 59.99983 * 23 21 11 38 38 H 1.09001 * 109.47303 * 180.02562 * 23 21 11 39 39 H 1.09001 * 109.46650 * 299.99475 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1205 1.1352 0.0000 4 7 3.4694 1.2725 0.0005 5 1 4.0770 0.5163 0.0013 6 7 3.9007 2.5813 -0.0002 7 6 2.9953 3.4799 -0.0007 8 6 3.2565 4.9642 -0.0020 9 6 3.3438 5.4576 -1.4232 10 8 3.2079 4.6805 -2.3443 11 7 3.5740 6.7623 -1.6706 12 6 3.6584 7.2421 -3.0522 13 6 2.2881 7.6536 -3.5257 14 1 1.4394 7.5667 -2.8635 15 6 2.1181 8.1418 -4.8039 16 7 3.1517 8.2480 -5.6101 17 14 0.4195 8.6511 -5.3909 18 1 -0.1004 9.7360 -4.5205 19 1 0.5051 9.1375 -6.7914 20 1 -0.4966 7.4840 -5.3280 21 6 3.7387 7.7010 -0.5579 22 6 5.1218 8.3502 -0.6389 23 6 2.6612 8.7840 -0.6404 24 16 1.3991 2.7414 -0.0071 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 2.4429 5.4767 0.5112 29 1 4.1959 5.1682 0.5119 30 1 4.3312 8.0984 -3.0991 31 1 4.0394 6.4454 -3.6909 32 1 3.0322 8.5911 -6.5094 33 1 3.6441 7.1650 0.3866 34 1 5.2168 8.8861 -1.5833 35 1 5.2446 9.0483 0.1893 36 1 5.8894 7.5786 -0.5801 37 1 1.6760 8.3214 -0.5827 38 1 2.7840 9.4826 0.1872 39 1 2.7563 9.3199 -1.5848 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544741843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:49 Heat of formation + Delta-G solvation = 13.121700 kcal Electronic energy + Delta-G solvation = -22058.384148 eV Core-core repulsion = 18741.816273 eV Total energy + Delta-G solvation = -3316.567874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25129 -40.56160 -37.61102 -36.79585 -34.94278 -33.88374 -32.37908 -30.92994 -28.94921 -27.91318 -27.64321 -25.05465 -24.37656 -22.83810 -21.63252 -20.16530 -19.44455 -18.55389 -18.33143 -18.15397 -16.96527 -16.58308 -16.48210 -16.13756 -15.88199 -14.94343 -14.82976 -14.76058 -14.41629 -14.41005 -14.28812 -13.90547 -13.36561 -13.29479 -13.25898 -13.09468 -12.77743 -12.69978 -12.48397 -12.22922 -12.15207 -12.04077 -11.64830 -11.56304 -11.45979 -10.82474 -10.58170 -10.55515 -10.54012 -9.39837 -8.90652 -8.15692 -6.26704 -0.19912 0.18079 0.28901 0.85778 1.30774 1.38704 1.42486 1.48749 1.80726 2.32384 2.47683 3.06931 3.14970 3.58115 3.78613 3.98857 4.07906 4.32545 4.39996 4.43667 4.45800 4.51534 4.55552 4.80165 4.92056 4.96473 5.09324 5.14752 5.20247 5.29792 5.51841 5.65829 5.70930 5.80240 5.91579 6.05416 6.15190 6.65207 6.76721 6.85359 7.34104 7.49739 8.91472 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.004459 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.539071 B = 6278.306284 C = 7271.273972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.581 5.581 3 C 0.333 3.667 4 N -0.515 5.515 5 H 0.455 0.545 6 N -0.221 5.221 7 C 0.101 3.899 8 C -0.054 4.054 9 C 0.502 3.498 10 O -0.589 6.589 11 N -0.591 5.591 12 C 0.265 3.735 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.957 3.043 18 H -0.259 1.259 19 H -0.285 1.285 20 H -0.280 1.280 21 C 0.122 3.878 22 C -0.159 4.159 23 C -0.155 4.155 24 S -0.006 6.006 25 H 0.103 0.897 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.027 0.973 31 H -0.010 1.010 32 H 0.263 0.737 33 H 0.126 0.874 34 H 0.035 0.965 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -5.128 18.843 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.316 5.316 3 C -0.056 4.056 4 N -0.252 5.252 5 H 0.304 0.696 6 N -0.034 5.034 7 C -0.202 4.202 8 C -0.097 4.097 9 C 0.288 3.712 10 O -0.470 6.470 11 N -0.322 5.322 12 C 0.144 3.856 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.782 3.218 18 H -0.183 1.183 19 H -0.210 1.210 20 H -0.206 1.206 21 C 0.019 3.981 22 C -0.217 4.217 23 C -0.212 4.212 24 S 0.222 5.778 25 H 0.122 0.878 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.175 0.825 29 H 0.180 0.820 30 H 0.045 0.955 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.054 0.946 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.296 -6.107 18.194 19.235 hybrid contribution -0.330 0.039 -1.362 1.402 sum -1.625 -6.067 16.831 17.965 Atomic orbital electron populations 1.22386 0.83980 1.04457 1.01297 1.71808 1.11359 1.18163 1.30262 1.25486 0.89425 0.93422 0.97243 1.45586 1.02645 1.04374 1.72554 0.69619 1.73460 1.25083 0.88893 1.15930 1.26954 0.91342 0.99931 1.01941 1.20509 1.09615 0.84401 0.95185 1.20748 0.76921 0.82390 0.91118 1.90709 1.51978 1.56079 1.48263 1.48307 1.68463 1.06961 1.08486 1.18639 0.96048 0.93073 0.77835 1.21655 0.94754 1.41318 0.98372 0.92352 1.25764 1.00456 0.96149 0.96829 1.70044 1.31822 1.47433 1.07918 0.85631 0.79976 0.78687 0.77526 1.18298 1.21015 1.20609 1.21539 0.96147 0.91038 0.89327 1.22144 0.95632 1.01335 1.02581 1.22104 0.97994 0.98714 1.02436 1.86189 1.09150 0.99185 1.83239 0.87804 0.92860 0.91401 0.82479 0.82030 0.95471 0.99172 0.92788 0.85607 0.94603 0.88385 0.92253 0.93293 0.89098 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.44 127.77 1.33 1.97 16 2 N -0.58 -15.80 11.06 -369.61 -4.09 -19.89 16 3 C 0.33 9.26 8.43 179.92 1.52 10.77 16 4 N -0.52 -13.55 6.93 -57.67 -0.40 -13.95 16 5 H 0.45 9.74 8.96 -214.76 -1.93 7.81 16 6 N -0.22 -6.23 11.96 -48.92 -0.59 -6.81 16 7 C 0.10 2.78 6.08 88.73 0.54 3.32 16 8 C -0.05 -1.26 4.62 29.10 0.13 -1.12 16 9 C 0.50 18.86 7.67 87.66 0.67 19.53 16 10 O -0.59 -29.19 15.61 -3.03 -0.05 -29.23 16 11 N -0.59 -22.52 2.39 -802.16 -1.91 -24.43 16 12 C 0.27 13.57 4.60 85.63 0.39 13.96 16 13 C -0.52 -28.57 7.83 25.60 0.20 -28.37 16 14 H 0.06 3.12 7.62 -2.91 -0.02 3.10 16 15 C 0.01 0.36 5.46 84.65 0.46 0.82 16 16 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 17 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 C 0.12 3.14 3.17 44.99 0.14 3.29 16 22 C -0.16 -3.79 9.17 71.98 0.66 -3.13 16 23 C -0.15 -4.21 8.47 71.98 0.61 -3.60 16 24 S -0.01 -0.16 22.42 -56.49 -1.27 -1.42 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.16 2.50 7.79 -2.39 -0.02 2.48 16 29 H 0.16 2.53 7.79 -2.39 -0.02 2.51 16 30 H 0.03 1.43 6.43 -2.39 -0.02 1.41 16 31 H -0.01 -0.60 7.42 -2.39 -0.02 -0.62 16 32 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.13 2.02 5.77 -2.38 -0.01 2.00 16 34 H 0.03 1.09 6.66 -2.39 -0.02 1.08 16 35 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.46 6.92 -2.39 -0.02 1.45 16 Total: -1.00 -76.75 341.10 -0.18 -76.92 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -0.85 Total: 10.63 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 6.66 Total: 17.43 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -6.70 Total: -120.64 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.23 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.27 Total: -1.42 kcal Total: -76.75 -0.18 -76.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544741843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.043 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds