Wall clock time and date at job start Tue Mar 31 2020 03:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46839 * 2 1 4 4 H 1.08999 * 109.47155 * 305.77372 * 3 2 1 5 5 C 1.50702 * 109.46561 * 185.77483 * 3 2 1 6 6 H 1.07999 * 120.00069 * 335.21057 * 5 3 2 7 7 C 1.37878 * 119.99760 * 155.21818 * 5 3 2 8 8 N 1.31521 * 120.00033 * 355.33700 * 7 5 3 9 9 Si 1.86794 * 120.00091 * 175.33391 * 7 5 3 10 10 H 1.48504 * 109.47135 * 90.00047 * 9 7 5 11 11 H 1.48497 * 109.47352 * 329.99945 * 9 7 5 12 12 H 1.48501 * 109.47390 * 209.99906 * 9 7 5 13 13 N 1.46497 * 109.47065 * 65.77655 * 3 2 1 14 14 C 1.34778 * 119.99685 * 274.99770 * 13 3 2 15 15 O 1.21279 * 120.00144 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99900 * 180.02562 * 14 13 3 17 17 C 1.53659 * 112.54160 * 300.40643 * 16 14 13 18 18 C 1.55895 * 100.18632 * 268.43774 * 17 16 14 19 19 C 1.51129 * 104.54483 * 334.27146 * 18 17 16 20 20 O 1.21282 * 124.72661 * 190.84399 * 19 18 17 21 21 N 1.35823 * 110.54139 * 10.85970 * 19 18 17 22 22 C 1.46844 * 138.49204 * 194.78323 * 21 19 18 23 23 C 1.54422 * 113.55683 * 164.33917 * 22 21 19 24 24 S 1.83553 * 112.61494 * 66.01400 * 16 14 13 25 25 H 1.09001 * 109.47083 * 60.00212 * 1 2 3 26 26 H 1.09002 * 109.46899 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47318 * 300.00111 * 1 2 3 28 28 H 1.08992 * 109.47318 * 239.99889 * 2 1 3 29 29 H 1.09003 * 109.46576 * 119.99671 * 2 1 3 30 30 H 0.97005 * 119.99646 * 5.27231 * 8 7 5 31 31 H 0.96994 * 120.00058 * 94.99898 * 13 3 2 32 32 H 1.09000 * 111.17964 * 27.30876 * 17 16 14 33 33 H 1.08993 * 111.17998 * 151.61899 * 17 16 14 34 34 H 1.08997 * 110.68994 * 215.30811 * 18 17 16 35 35 H 1.09000 * 110.10270 * 92.93554 * 18 17 16 36 36 H 1.09011 * 108.67263 * 43.27088 * 22 21 19 37 37 H 1.08993 * 108.54501 * 285.31975 * 22 21 19 38 38 H 1.09009 * 110.99041 * 224.42327 * 23 22 21 39 39 H 1.09002 * 110.98591 * 100.61784 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5947 1.9853 -0.8338 5 6 3.5402 1.4449 -0.1430 6 1 4.1136 0.5839 0.1675 7 6 4.1807 2.5463 -0.6700 8 7 3.4777 3.5571 -1.1324 9 14 6.0469 2.6028 -0.7271 10 1 6.5207 2.0234 -2.0098 11 1 6.6009 1.8179 0.4052 12 1 6.5029 4.0122 -0.6223 13 7 1.6684 2.0918 1.2596 14 6 0.4527 2.6581 1.3928 15 8 -0.3335 2.6306 0.4697 16 6 0.0706 3.3266 2.6883 17 6 0.1157 2.3627 3.8841 18 6 -1.3569 1.8512 3.8817 19 6 -2.1438 2.9631 3.2272 20 8 -3.3545 3.0318 3.2042 21 7 -1.3063 3.8746 2.6682 22 6 -1.3656 5.2429 2.1385 23 6 0.0215 5.9008 1.9718 24 16 1.0756 4.8232 3.0336 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5127 3.5621 -1.0337 31 1 2.2973 2.1142 1.9977 32 1 0.8327 1.5592 3.7155 33 1 0.3336 2.8943 4.8104 34 1 -1.7081 1.6837 4.8998 35 1 -1.4341 0.9344 3.2971 36 1 -1.9625 5.8537 2.8158 37 1 -1.8588 5.2174 1.1669 38 1 0.0143 6.9262 2.3417 39 1 0.3484 5.8646 0.9326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546585158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:20 Heat of formation + Delta-G solvation = -61.182616 kcal Electronic energy + Delta-G solvation = -23599.238939 eV Core-core repulsion = 20247.156237 eV Total energy + Delta-G solvation = -3352.082703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75222 -38.67602 -36.61370 -35.14190 -34.05392 -32.30492 -31.58597 -29.63339 -28.11481 -26.46892 -24.24681 -23.21883 -22.44720 -20.96073 -19.80398 -19.18659 -18.04977 -17.43832 -16.67360 -15.85673 -15.50951 -15.29917 -15.03177 -14.50025 -14.17804 -13.86606 -13.70963 -13.56959 -13.28313 -13.18361 -13.00035 -12.54475 -12.49089 -12.30222 -11.88746 -11.50530 -11.20520 -11.11790 -10.88286 -10.83424 -10.52197 -10.44417 -10.23412 -9.96117 -9.90989 -9.61939 -9.04821 -8.56744 -8.51267 -7.98972 -7.72042 -6.59889 -4.41069 1.42754 1.90213 2.45469 2.65798 3.31675 3.34755 3.37773 3.51106 3.82653 4.01152 4.21897 4.35267 4.50681 4.73724 4.78190 4.95977 5.16663 5.34540 5.39305 5.43903 5.53013 5.62074 5.68159 5.71979 5.93059 5.96994 6.05960 6.16901 6.59057 6.75285 6.85819 6.96984 7.02230 7.21300 7.53197 7.78194 8.02975 8.19821 8.49978 8.66124 8.98273 9.38866 10.76744 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.006206 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.885015 B = 4511.023451 C = 5292.488503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.242 3.758 4 H 0.055 0.945 5 C -0.608 4.608 6 H 0.057 0.943 7 C 0.034 3.966 8 N -0.884 5.884 9 Si 1.070 2.930 10 H -0.286 1.286 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.684 5.684 14 C 0.508 3.492 15 O -0.536 6.536 16 C 0.142 3.858 17 C -0.107 4.107 18 C -0.143 4.143 19 C 0.550 3.450 20 O -0.524 6.524 21 N -0.600 5.600 22 C 0.128 3.872 23 C -0.078 4.078 24 S -0.232 6.232 25 H 0.051 0.949 26 H 0.030 0.970 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.277 0.723 31 H 0.388 0.612 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 0.723 10.497 11.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C 0.143 3.857 4 H 0.073 0.927 5 C -0.646 4.646 6 H 0.076 0.924 7 C -0.176 4.176 8 N -0.517 5.517 9 Si 0.898 3.102 10 H -0.212 1.212 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.333 5.333 14 C 0.287 3.713 15 O -0.415 6.415 16 C -0.058 4.058 17 C -0.146 4.146 18 C -0.184 4.184 19 C 0.338 3.662 20 O -0.399 6.399 21 N -0.338 5.338 22 C 0.006 3.994 23 C -0.227 4.227 24 S -0.003 6.003 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.222 0.778 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.140 0.860 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.335 1.977 9.919 10.650 hybrid contribution -1.820 -0.891 0.128 2.030 sum -5.155 1.087 10.047 11.345 Atomic orbital electron populations 1.21857 0.97115 0.98757 1.02145 1.21829 0.94066 0.99039 1.00690 1.18984 0.95326 0.88592 0.82762 0.92736 1.22106 0.90855 1.04230 1.47444 0.92420 1.25988 1.07175 0.92448 0.91940 1.70726 1.09662 1.32288 1.39016 0.83528 0.73824 0.76262 0.76598 1.21228 1.21146 1.20869 1.47696 1.12606 1.54329 1.18701 1.19990 0.84220 0.79854 0.87223 1.90684 1.51057 1.59981 1.39816 1.24590 0.86113 0.95968 0.99157 1.22753 0.97227 0.98388 0.96217 1.22562 0.94127 0.98257 1.03439 1.20937 0.86367 0.82147 0.76710 1.90703 1.12947 1.76546 1.59675 1.49478 1.07361 1.14621 1.62307 1.21475 0.96664 0.80607 1.00652 1.24643 0.93234 1.01304 1.03483 1.88297 1.43674 1.05600 1.62735 0.92948 0.95091 0.93411 0.92152 0.93516 0.91155 0.77848 0.87724 0.88028 0.86792 0.87152 0.89980 0.90031 0.85983 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.53 37.16 0.32 -2.40 16 2 C -0.12 -2.39 5.58 -26.73 -0.15 -2.54 16 3 C 0.24 5.60 1.95 -69.08 -0.13 5.47 16 4 H 0.05 1.47 6.12 -51.93 -0.32 1.16 16 5 C -0.61 -15.18 8.50 -34.44 -0.29 -15.47 16 6 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 7 C 0.03 0.89 5.45 -17.82 -0.10 0.79 16 8 N -0.88 -24.75 13.63 55.43 0.76 -23.99 16 9 Si 1.07 23.05 29.91 -169.99 -5.08 17.97 16 10 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.68 -13.75 4.81 -54.93 -0.26 -14.01 16 14 C 0.51 9.86 5.43 -10.98 -0.06 9.80 16 15 O -0.54 -12.18 13.77 5.56 0.08 -12.11 16 16 C 0.14 2.23 0.69 -67.80 -0.05 2.18 16 17 C -0.11 -1.28 6.39 -24.84 -0.16 -1.44 16 18 C -0.14 -1.72 6.83 -26.13 -0.18 -1.89 16 19 C 0.55 8.95 8.39 -10.30 -0.09 8.86 16 20 O -0.52 -10.12 18.03 5.56 0.10 -10.02 16 21 N -0.60 -9.57 2.91 -159.75 -0.47 -10.03 16 22 C 0.13 1.80 7.25 -3.11 -0.02 1.77 16 23 C -0.08 -1.03 7.55 37.90 0.29 -0.74 16 24 S -0.23 -3.49 22.29 -107.50 -2.40 -5.89 16 25 H 0.05 1.09 7.89 -51.93 -0.41 0.68 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.93 5.63 -51.93 -0.29 0.63 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.28 7.96 6.66 -40.82 -0.27 7.69 16 31 H 0.39 7.32 8.35 -40.82 -0.34 6.98 16 32 H 0.10 1.16 7.59 -51.93 -0.39 0.77 16 33 H 0.10 1.04 7.88 -51.93 -0.41 0.63 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.12 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -31.46 330.40 -8.37 -39.83 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.45 Total: 8.89 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.62 Total: 4.38 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.03 Total: -48.04 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.18 Total: -22.13 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.08 Total: 17.97 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.40 Total: -5.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.46 -8.37 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546585158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.353 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds