Wall clock time and date at job start Tue Mar 31 2020 03:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46839 * 2 1 4 4 H 1.08999 * 109.47155 * 305.77372 * 3 2 1 5 5 C 1.50702 * 109.46561 * 185.77483 * 3 2 1 6 6 H 1.07999 * 120.00069 * 335.21057 * 5 3 2 7 7 C 1.37878 * 119.99760 * 155.21818 * 5 3 2 8 8 N 1.31521 * 120.00033 * 355.33700 * 7 5 3 9 9 Si 1.86794 * 120.00091 * 175.33391 * 7 5 3 10 10 H 1.48504 * 109.47135 * 90.00047 * 9 7 5 11 11 H 1.48497 * 109.47352 * 329.99945 * 9 7 5 12 12 H 1.48501 * 109.47390 * 209.99906 * 9 7 5 13 13 N 1.46497 * 109.47065 * 65.77655 * 3 2 1 14 14 C 1.34778 * 119.99685 * 274.99770 * 13 3 2 15 15 O 1.21279 * 120.00144 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99900 * 180.02562 * 14 13 3 17 17 C 1.53659 * 112.54160 * 300.40643 * 16 14 13 18 18 C 1.55895 * 100.18632 * 268.43774 * 17 16 14 19 19 C 1.51129 * 104.54483 * 334.27146 * 18 17 16 20 20 O 1.21282 * 124.72661 * 190.84399 * 19 18 17 21 21 N 1.35823 * 110.54139 * 10.85970 * 19 18 17 22 22 C 1.46844 * 138.49204 * 194.78323 * 21 19 18 23 23 C 1.54422 * 113.55683 * 164.33917 * 22 21 19 24 24 S 1.83553 * 112.61494 * 66.01400 * 16 14 13 25 25 H 1.09001 * 109.47083 * 60.00212 * 1 2 3 26 26 H 1.09002 * 109.46899 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47318 * 300.00111 * 1 2 3 28 28 H 1.08992 * 109.47318 * 239.99889 * 2 1 3 29 29 H 1.09003 * 109.46576 * 119.99671 * 2 1 3 30 30 H 0.97005 * 119.99646 * 5.27231 * 8 7 5 31 31 H 0.96994 * 120.00058 * 94.99898 * 13 3 2 32 32 H 1.09000 * 111.17964 * 27.30876 * 17 16 14 33 33 H 1.08993 * 111.17998 * 151.61899 * 17 16 14 34 34 H 1.08997 * 110.68994 * 215.30811 * 18 17 16 35 35 H 1.09000 * 110.10270 * 92.93554 * 18 17 16 36 36 H 1.09011 * 108.67263 * 43.27088 * 22 21 19 37 37 H 1.08993 * 108.54501 * 285.31975 * 22 21 19 38 38 H 1.09009 * 110.99041 * 224.42327 * 23 22 21 39 39 H 1.09002 * 110.98591 * 100.61784 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5947 1.9853 -0.8338 5 6 3.5402 1.4449 -0.1430 6 1 4.1136 0.5839 0.1675 7 6 4.1807 2.5463 -0.6700 8 7 3.4777 3.5571 -1.1324 9 14 6.0469 2.6028 -0.7271 10 1 6.5207 2.0234 -2.0098 11 1 6.6009 1.8179 0.4052 12 1 6.5029 4.0122 -0.6223 13 7 1.6684 2.0918 1.2596 14 6 0.4527 2.6581 1.3928 15 8 -0.3335 2.6306 0.4697 16 6 0.0706 3.3266 2.6883 17 6 0.1157 2.3627 3.8841 18 6 -1.3569 1.8512 3.8817 19 6 -2.1438 2.9631 3.2272 20 8 -3.3545 3.0318 3.2042 21 7 -1.3063 3.8746 2.6682 22 6 -1.3656 5.2429 2.1385 23 6 0.0215 5.9008 1.9718 24 16 1.0756 4.8232 3.0336 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5127 3.5621 -1.0337 31 1 2.2973 2.1142 1.9977 32 1 0.8327 1.5592 3.7155 33 1 0.3336 2.8943 4.8104 34 1 -1.7081 1.6837 4.8998 35 1 -1.4341 0.9344 3.2971 36 1 -1.9625 5.8537 2.8158 37 1 -1.8588 5.2174 1.1669 38 1 0.0143 6.9262 2.3417 39 1 0.3484 5.8646 0.9326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546585158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:19 Heat of formation + Delta-G solvation = -82.545019 kcal Electronic energy + Delta-G solvation = -23600.165283 eV Core-core repulsion = 20247.156237 eV Total energy + Delta-G solvation = -3353.009046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05509 -40.22384 -37.99284 -36.88489 -35.17341 -34.19198 -33.20417 -30.75902 -29.49158 -28.17760 -25.42017 -25.02000 -23.68387 -22.40725 -21.43183 -20.55143 -19.57870 -18.88777 -18.16341 -17.23504 -16.89817 -16.66616 -16.43584 -15.89619 -15.59593 -15.49678 -15.08249 -14.96789 -14.63510 -14.60914 -14.30701 -14.21878 -13.78241 -13.68168 -13.02413 -12.87724 -12.60593 -12.56490 -12.51244 -12.25616 -12.17301 -11.88877 -11.77325 -11.64496 -11.24561 -11.11029 -10.89079 -10.49126 -9.93292 -9.65124 -9.00187 -8.65179 -6.46520 0.18257 0.74142 1.20109 1.48499 1.59490 1.65151 1.83250 1.87031 2.34490 2.57696 2.86050 3.12187 3.23690 3.44349 3.70759 3.74239 3.79211 4.16500 4.27391 4.29563 4.33141 4.37127 4.51387 4.53150 4.59328 4.72506 4.79098 4.90270 4.91715 5.07001 5.16520 5.27008 5.48493 5.74154 5.82906 5.95835 6.16782 6.50170 6.78693 6.89848 7.39013 7.41647 8.69941 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.006206 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.885015 B = 4511.023451 C = 5292.488503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.112 4.112 3 C 0.248 3.752 4 H 0.006 0.994 5 C -0.611 4.611 6 H 0.064 0.936 7 C -0.012 4.012 8 N -0.916 5.916 9 Si 1.116 2.884 10 H -0.279 1.279 11 H -0.261 1.261 12 H -0.289 1.289 13 N -0.680 5.680 14 C 0.508 3.492 15 O -0.575 6.575 16 C 0.142 3.858 17 C -0.098 4.098 18 C -0.133 4.133 19 C 0.538 3.462 20 O -0.563 6.563 21 N -0.607 5.607 22 C 0.120 3.880 23 C -0.071 4.071 24 S -0.235 6.235 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.257 0.743 31 H 0.397 0.603 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.151 0.849 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.161 0.839 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 -0.104 12.974 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.150 4.150 3 C 0.147 3.853 4 H 0.024 0.976 5 C -0.649 4.649 6 H 0.082 0.918 7 C -0.215 4.215 8 N -0.551 5.551 9 Si 0.938 3.062 10 H -0.205 1.205 11 H -0.185 1.185 12 H -0.215 1.215 13 N -0.329 5.329 14 C 0.289 3.711 15 O -0.456 6.456 16 C -0.058 4.058 17 C -0.137 4.137 18 C -0.174 4.174 19 C 0.329 3.671 20 O -0.441 6.441 21 N -0.344 5.344 22 C -0.002 4.002 23 C -0.220 4.220 24 S -0.006 6.006 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.232 0.768 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.178 0.822 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.368 1.137 12.427 12.701 hybrid contribution -2.179 -0.615 -0.704 2.371 sum -4.547 0.522 11.723 12.584 Atomic orbital electron populations 1.21717 0.96237 1.00127 1.00625 1.21745 0.94749 0.97123 1.01415 1.18699 0.94390 0.89755 0.82469 0.97596 1.22367 0.91775 1.04076 1.46731 0.91785 1.27296 1.10745 0.92137 0.91319 1.70867 1.08532 1.33876 1.41832 0.82955 0.69366 0.76217 0.77702 1.20527 1.18488 1.21544 1.47129 1.13346 1.54582 1.17882 1.20490 0.83234 0.79014 0.88337 1.90674 1.52039 1.61106 1.41792 1.24373 0.86163 0.97061 0.98241 1.22904 0.97515 0.97930 0.95316 1.22659 0.93272 0.96417 1.05055 1.21784 0.86190 0.82823 0.76301 1.90677 1.14627 1.77481 1.61275 1.49726 1.07531 1.15134 1.61962 1.21633 0.97322 0.80692 1.00546 1.24734 0.92140 1.03050 1.02036 1.88271 1.44346 1.05388 1.62599 0.95720 0.92108 0.93718 0.92657 0.91367 0.93202 0.76780 0.86469 0.85408 0.83102 0.86862 0.87347 0.91744 0.82159 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 8.53 71.98 0.61 -4.31 16 2 C -0.11 -4.46 5.58 30.60 0.17 -4.29 16 3 C 0.25 11.61 1.95 44.25 0.09 11.70 16 4 H 0.01 0.34 6.12 -2.39 -0.01 0.33 16 5 C -0.61 -30.43 8.50 25.60 0.22 -30.21 16 6 H 0.06 3.07 7.81 -2.91 -0.02 3.04 16 7 C -0.01 -0.64 5.45 84.65 0.46 -0.18 16 8 N -0.92 -52.84 13.63 21.45 0.29 -52.55 16 9 Si 1.12 45.82 29.91 68.60 2.05 47.87 16 10 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 12 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 13 N -0.68 -27.23 4.81 -446.09 -2.15 -29.37 16 14 C 0.51 19.77 5.43 87.66 0.48 20.25 16 15 O -0.57 -27.01 13.77 -3.03 -0.04 -27.05 16 16 C 0.14 4.27 0.69 44.14 0.03 4.30 16 17 C -0.10 -2.03 6.39 31.82 0.20 -1.83 16 18 C -0.13 -2.82 6.83 30.99 0.21 -2.61 16 19 C 0.54 16.87 8.39 87.63 0.73 17.60 16 20 O -0.56 -21.53 18.03 -3.04 -0.05 -21.58 16 21 N -0.61 -18.83 2.91 -777.13 -2.26 -21.09 16 22 C 0.12 3.31 7.25 86.80 0.63 3.94 16 23 C -0.07 -1.83 7.55 72.47 0.55 -1.28 16 24 S -0.24 -6.72 22.29 -56.49 -1.26 -7.98 16 25 H 0.02 1.04 7.89 -2.39 -0.02 1.02 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.04 1.70 5.63 -2.39 -0.01 1.69 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.26 15.59 6.66 -92.70 -0.62 14.97 16 31 H 0.40 14.53 8.35 -92.71 -0.77 13.76 16 32 H 0.12 2.18 7.59 -2.39 -0.02 2.16 16 33 H 0.13 2.06 7.88 -2.39 -0.02 2.04 16 34 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.16 2.81 8.14 -2.38 -0.02 2.79 16 39 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -71.10 330.40 1.41 -69.69 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.45 Total: 28.98 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.38 Total: 13.08 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -4.12 Total: -103.01 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -0.10 Total: -48.63 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.05 Total: 47.87 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -1.26 Total: -7.98 kcal Total: -71.10 1.41 -69.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546585158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.855 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds