Wall clock time and date at job start Tue Mar 31 2020 03:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47408 * 2 1 4 4 H 1.09004 * 109.47272 * 55.00145 * 3 2 1 5 5 C 1.50708 * 109.46978 * 175.00104 * 3 2 1 6 6 H 1.07998 * 119.99705 * 120.00581 * 5 3 2 7 7 C 1.37878 * 119.99879 * 299.99585 * 5 3 2 8 8 N 1.31517 * 119.99928 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00035 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47085 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47110 * 120.00317 * 9 7 5 12 12 H 1.48497 * 109.47507 * 240.00322 * 9 7 5 13 13 N 1.46503 * 109.47187 * 294.99906 * 3 2 1 14 14 C 1.34776 * 119.99927 * 84.99974 * 13 3 2 15 15 O 1.21279 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99847 * 180.02562 * 14 13 3 17 17 C 1.53659 * 113.03337 * 304.03526 * 16 14 13 18 18 C 1.54896 * 100.63963 * 269.16878 * 17 16 14 19 19 C 1.51127 * 104.27054 * 333.58968 * 18 17 16 20 20 O 1.21278 * 124.72315 * 191.27295 * 19 18 17 21 21 N 1.35819 * 110.54492 * 11.27117 * 19 18 17 22 22 C 1.46840 * 138.49701 * 194.78868 * 21 19 18 23 23 C 1.54426 * 113.56393 * 164.33520 * 22 21 19 24 24 S 1.83549 * 112.62045 * 70.04674 * 16 14 13 25 25 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46947 * 300.00178 * 1 2 3 27 27 H 1.08997 * 109.46661 * 59.99912 * 1 2 3 28 28 H 1.08999 * 109.46947 * 239.99822 * 2 1 3 29 29 H 1.09001 * 109.47076 * 120.00316 * 2 1 3 30 30 H 0.97000 * 119.99986 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99801 * 264.99934 * 13 3 2 32 32 H 1.09003 * 111.18414 * 27.01627 * 17 16 14 33 33 H 1.08999 * 111.18207 * 151.28421 * 17 16 14 34 34 H 1.09002 * 110.47102 * 92.28632 * 18 17 16 35 35 H 1.08991 * 110.47227 * 214.89016 * 18 17 16 36 36 H 1.09004 * 108.67587 * 285.41086 * 22 21 19 37 37 H 1.09004 * 108.67369 * 43.26033 * 22 21 19 38 38 H 1.08995 * 110.98760 * 224.41944 * 23 22 21 39 39 H 1.09004 * 110.98341 * 100.61211 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5421 1.4441 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1434 0.8782 1.2280 8 7 3.4063 0.3365 2.1729 9 14 6.0050 0.8809 1.3818 10 1 6.5988 1.5469 0.1948 11 1 6.3991 1.6163 2.6103 12 1 6.4971 -0.5178 1.4630 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3394 2.6319 -0.4345 16 6 0.0365 3.3376 -2.6548 17 6 1.0167 4.4398 -3.0857 18 6 0.3801 5.6733 -2.3984 19 6 -1.0846 5.3202 -2.2817 20 8 -1.9610 6.1002 -1.9744 21 7 -1.2828 4.0075 -2.5687 22 6 -2.3985 3.1080 -2.8885 23 6 -1.9506 1.7600 -3.4942 24 16 -0.2266 2.1435 -4.0237 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0619 2.9495 31 1 2.2721 2.1231 -1.9978 32 1 2.0186 4.2481 -2.7014 33 1 1.0287 4.5545 -4.1696 34 1 0.8153 5.8263 -1.4108 35 1 0.5099 6.5626 -3.0151 36 1 -2.9606 2.9109 -1.9755 37 1 -3.0575 3.6079 -3.5984 38 1 -2.5709 1.4908 -4.3491 39 1 -1.9617 0.9711 -2.7421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546585160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:26 Heat of formation + Delta-G solvation = -53.463905 kcal Electronic energy + Delta-G solvation = -23326.979473 eV Core-core repulsion = 19975.231479 eV Total energy + Delta-G solvation = -3351.747994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83659 -38.73035 -36.63953 -35.08427 -34.17906 -32.45617 -31.05922 -29.73106 -28.29257 -26.71967 -24.34458 -23.24273 -22.44904 -20.90767 -19.54684 -19.30651 -18.17187 -17.35391 -16.26428 -15.94279 -15.56103 -15.32487 -15.23198 -14.64510 -14.31073 -14.07549 -13.83792 -13.65546 -13.30877 -12.93948 -12.77849 -12.56673 -12.21204 -12.01427 -11.65314 -11.46868 -11.33164 -11.27713 -11.02511 -10.91463 -10.64567 -10.36972 -10.27446 -9.95398 -9.76486 -9.64197 -9.12406 -8.66632 -8.56446 -8.04830 -7.90063 -6.18897 -4.28798 1.27977 1.74815 2.42383 2.58555 3.19937 3.27263 3.29101 3.30750 3.72893 3.93224 4.16978 4.29546 4.44402 4.65445 4.75482 4.97333 5.12894 5.16643 5.26175 5.35597 5.49426 5.55765 5.63077 5.71344 6.00144 6.31176 6.37504 6.56748 6.95512 6.96371 7.09341 7.24135 7.30678 7.53237 7.63118 7.80464 7.99143 8.09496 8.48518 8.66302 8.92011 9.38497 10.86437 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.005111 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.652483 B = 5476.911546 C = 5890.212210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.689 5.689 14 C 0.513 3.487 15 O -0.525 6.525 16 C 0.146 3.854 17 C -0.109 4.109 18 C -0.143 4.143 19 C 0.550 3.450 20 O -0.521 6.521 21 N -0.602 5.602 22 C 0.128 3.872 23 C -0.078 4.078 24 S -0.234 6.234 25 H 0.023 0.977 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 4.003 -12.918 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.337 5.337 14 C 0.292 3.708 15 O -0.402 6.402 16 C -0.055 4.055 17 C -0.148 4.148 18 C -0.184 4.184 19 C 0.338 3.662 20 O -0.396 6.396 21 N -0.339 5.339 22 C 0.005 3.995 23 C -0.227 4.227 24 S -0.006 6.006 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.139 3.915 -12.808 14.733 hybrid contribution 0.543 0.036 0.668 0.862 sum -5.596 3.951 -12.140 13.939 Atomic orbital electron populations 1.21835 0.98521 0.98096 1.00936 1.21931 0.92486 0.99670 1.02506 1.18870 0.94437 0.89234 0.80342 0.93210 1.21227 0.90444 1.39258 1.06372 0.91899 1.24878 0.98674 0.94706 0.95334 1.69899 1.35132 1.37465 1.09358 0.86395 0.84729 0.77843 0.78156 1.19675 1.20882 1.20842 1.46389 1.13672 1.54936 1.18747 1.19674 0.83781 0.80368 0.86995 1.90725 1.51367 1.59235 1.38915 1.24467 0.89920 0.95874 0.95206 1.22616 0.98561 0.91078 1.02556 1.22423 0.91690 0.99711 1.04575 1.21003 0.91297 0.79158 0.74701 1.90709 1.49542 1.52589 1.46717 1.49464 1.04646 1.08991 1.70828 1.21458 0.87752 0.88799 1.01453 1.24668 0.94314 0.99379 1.04325 1.88263 1.19239 1.56608 1.36477 0.95739 0.93265 0.94528 0.94727 0.88183 0.92535 0.77663 0.87576 0.87857 0.86742 0.86697 0.89927 0.89950 0.85940 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.16 0.32 -2.58 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.44 2.24 -69.08 -0.15 6.29 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.33 8.73 -34.44 -0.30 -13.63 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.85 11.29 55.43 0.63 -23.22 16 9 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.69 -13.18 4.79 -54.93 -0.26 -13.44 16 14 C 0.51 9.44 5.45 -10.99 -0.06 9.38 16 15 O -0.52 -11.59 13.77 5.56 0.08 -11.51 16 16 C 0.15 2.09 0.71 -67.80 -0.05 2.04 16 17 C -0.11 -1.22 6.28 -25.39 -0.16 -1.38 16 18 C -0.14 -1.66 6.81 -26.67 -0.18 -1.84 16 19 C 0.55 8.59 8.38 -10.30 -0.09 8.51 16 20 O -0.52 -9.80 18.03 5.56 0.10 -9.70 16 21 N -0.60 -8.91 2.91 -159.75 -0.47 -9.38 16 22 C 0.13 1.59 7.25 -3.11 -0.02 1.56 16 23 C -0.08 -0.85 7.55 37.91 0.29 -0.56 16 24 S -0.23 -2.98 22.28 -107.50 -2.40 -5.37 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 27 H 0.04 0.74 5.64 -51.93 -0.29 0.45 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.39 6.59 8.05 -40.82 -0.33 6.26 16 32 H 0.11 1.12 7.39 -51.93 -0.38 0.74 16 33 H 0.10 0.95 7.87 -51.93 -0.41 0.54 16 34 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -31.30 328.11 -8.50 -39.79 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.45 Total: 6.72 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -0.65 Total: 6.34 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.10 Total: -46.04 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.18 Total: -21.21 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.40 Total: -5.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.30 -8.50 -39.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546585160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.669 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds