Wall clock time and date at job start Tue Mar 31 2020 03:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47408 * 2 1 4 4 H 1.09004 * 109.47272 * 55.00145 * 3 2 1 5 5 C 1.50708 * 109.46978 * 175.00104 * 3 2 1 6 6 H 1.07998 * 119.99705 * 120.00581 * 5 3 2 7 7 C 1.37878 * 119.99879 * 299.99585 * 5 3 2 8 8 N 1.31517 * 119.99928 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00035 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47085 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47110 * 120.00317 * 9 7 5 12 12 H 1.48497 * 109.47507 * 240.00322 * 9 7 5 13 13 N 1.46503 * 109.47187 * 294.99906 * 3 2 1 14 14 C 1.34776 * 119.99927 * 84.99974 * 13 3 2 15 15 O 1.21279 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99847 * 180.02562 * 14 13 3 17 17 C 1.53659 * 113.03337 * 304.03526 * 16 14 13 18 18 C 1.54896 * 100.63963 * 269.16878 * 17 16 14 19 19 C 1.51127 * 104.27054 * 333.58968 * 18 17 16 20 20 O 1.21278 * 124.72315 * 191.27295 * 19 18 17 21 21 N 1.35819 * 110.54492 * 11.27117 * 19 18 17 22 22 C 1.46840 * 138.49701 * 194.78868 * 21 19 18 23 23 C 1.54426 * 113.56393 * 164.33520 * 22 21 19 24 24 S 1.83549 * 112.62045 * 70.04674 * 16 14 13 25 25 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46947 * 300.00178 * 1 2 3 27 27 H 1.08997 * 109.46661 * 59.99912 * 1 2 3 28 28 H 1.08999 * 109.46947 * 239.99822 * 2 1 3 29 29 H 1.09001 * 109.47076 * 120.00316 * 2 1 3 30 30 H 0.97000 * 119.99986 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99801 * 264.99934 * 13 3 2 32 32 H 1.09003 * 111.18414 * 27.01627 * 17 16 14 33 33 H 1.08999 * 111.18207 * 151.28421 * 17 16 14 34 34 H 1.09002 * 110.47102 * 92.28632 * 18 17 16 35 35 H 1.08991 * 110.47227 * 214.89016 * 18 17 16 36 36 H 1.09004 * 108.67587 * 285.41086 * 22 21 19 37 37 H 1.09004 * 108.67369 * 43.26033 * 22 21 19 38 38 H 1.08995 * 110.98760 * 224.41944 * 23 22 21 39 39 H 1.09004 * 110.98341 * 100.61211 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5421 1.4441 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1434 0.8782 1.2280 8 7 3.4063 0.3365 2.1729 9 14 6.0050 0.8809 1.3818 10 1 6.5988 1.5469 0.1948 11 1 6.3991 1.6163 2.6103 12 1 6.4971 -0.5178 1.4630 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3394 2.6319 -0.4345 16 6 0.0365 3.3376 -2.6548 17 6 1.0167 4.4398 -3.0857 18 6 0.3801 5.6733 -2.3984 19 6 -1.0846 5.3202 -2.2817 20 8 -1.9610 6.1002 -1.9744 21 7 -1.2828 4.0075 -2.5687 22 6 -2.3985 3.1080 -2.8885 23 6 -1.9506 1.7600 -3.4942 24 16 -0.2266 2.1435 -4.0237 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0619 2.9495 31 1 2.2721 2.1231 -1.9978 32 1 2.0186 4.2481 -2.7014 33 1 1.0287 4.5545 -4.1696 34 1 0.8153 5.8263 -1.4108 35 1 0.5099 6.5626 -3.0151 36 1 -2.9606 2.9109 -1.9755 37 1 -3.0575 3.6079 -3.5984 38 1 -2.5709 1.4908 -4.3491 39 1 -1.9617 0.9711 -2.7421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546585160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:26 Heat of formation + Delta-G solvation = -74.698012 kcal Electronic energy + Delta-G solvation = -23327.900253 eV Core-core repulsion = 19975.231479 eV Total energy + Delta-G solvation = -3352.668774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05404 -40.21623 -37.94459 -36.82409 -35.20274 -34.24473 -32.82212 -30.73418 -29.70760 -28.37527 -25.43443 -24.95190 -23.65726 -22.32267 -21.25278 -20.59122 -19.53995 -18.54741 -17.89630 -17.36260 -16.94516 -16.70519 -16.49681 -16.13008 -15.65267 -15.41017 -15.11891 -14.68232 -14.57259 -14.51114 -14.05908 -13.85917 -13.63936 -13.47443 -13.17393 -12.95723 -12.86751 -12.70129 -12.46066 -12.26114 -12.12877 -12.04838 -11.77355 -11.56216 -11.18812 -11.08061 -11.00971 -10.53826 -9.89563 -9.70437 -8.98142 -8.14492 -6.31330 0.18043 0.79157 1.22365 1.46600 1.48013 1.51747 1.59780 1.86928 2.29747 2.50408 2.88719 3.15686 3.17292 3.49697 3.70290 3.81308 3.81775 4.19526 4.34663 4.44956 4.49244 4.55784 4.59620 4.65502 4.74466 4.76769 4.84731 4.97888 5.06716 5.25160 5.42668 5.52348 5.61581 5.78343 5.83238 5.90630 6.17086 6.75694 6.80974 6.87423 7.31082 7.46668 8.90981 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.005111 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.652483 B = 5476.911546 C = 5890.212210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.282 3.718 4 H -0.001 1.001 5 C -0.543 4.543 6 H 0.076 0.924 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.257 1.257 11 H -0.287 1.287 12 H -0.282 1.282 13 N -0.684 5.684 14 C 0.513 3.487 15 O -0.568 6.568 16 C 0.141 3.859 17 C -0.100 4.100 18 C -0.137 4.137 19 C 0.537 3.463 20 O -0.563 6.563 21 N -0.607 5.607 22 C 0.117 3.883 23 C -0.072 4.072 24 S -0.217 6.217 25 H 0.045 0.955 26 H 0.021 0.979 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.162 0.838 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.588 4.105 -15.736 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.017 0.983 5 C -0.581 4.581 6 H 0.095 0.905 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.181 1.181 11 H -0.213 1.213 12 H -0.208 1.208 13 N -0.333 5.333 14 C 0.294 3.706 15 O -0.448 6.448 16 C -0.059 4.059 17 C -0.139 4.139 18 C -0.178 4.178 19 C 0.328 3.672 20 O -0.441 6.441 21 N -0.344 5.344 22 C -0.005 4.005 23 C -0.221 4.221 24 S 0.012 5.988 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.240 0.760 32 H 0.133 0.867 33 H 0.151 0.849 34 H 0.127 0.873 35 H 0.168 0.832 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.180 0.820 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.057 4.006 -15.684 16.959 hybrid contribution 0.116 -0.039 1.564 1.568 sum -4.941 3.967 -14.120 15.477 Atomic orbital electron populations 1.21663 0.97164 0.99094 0.99969 1.21779 0.93596 0.99162 1.01426 1.18410 0.93834 0.89093 0.80748 0.98268 1.21587 0.91162 1.38736 1.06620 0.90549 1.25730 1.03069 0.94447 0.95099 1.70054 1.36968 1.38490 1.09949 0.85361 0.79411 0.77709 0.78253 1.18059 1.21339 1.20758 1.46074 1.14528 1.54969 1.17726 1.20353 0.82712 0.79439 0.88134 1.90713 1.52413 1.60609 1.41060 1.24249 0.90776 0.97158 0.93743 1.22753 0.97836 0.89029 1.04275 1.22513 0.88721 1.01423 1.05123 1.21777 0.92592 0.79109 0.73750 1.90677 1.51110 1.53723 1.48629 1.49706 1.05425 1.09099 1.70164 1.21674 0.87658 0.89717 1.01463 1.24809 0.93858 0.97993 1.05397 1.88208 1.20385 1.55907 1.34308 0.93621 0.95939 0.93732 0.93780 0.91063 0.92703 0.76001 0.86748 0.84894 0.87310 0.83246 0.91631 0.87684 0.82029 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.52 71.98 0.61 -4.61 16 2 C -0.12 -5.67 5.45 30.59 0.17 -5.51 16 3 C 0.28 13.60 2.24 44.24 0.10 13.70 16 4 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 5 C -0.54 -26.98 8.73 25.60 0.22 -26.76 16 6 H 0.08 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -50.87 11.29 21.45 0.24 -50.63 16 9 Si 0.97 40.41 29.54 68.60 2.03 42.44 16 10 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 11 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.68 -25.80 4.79 -446.10 -2.14 -27.94 16 14 C 0.51 18.71 5.45 87.66 0.48 19.19 16 15 O -0.57 -25.79 13.77 -3.03 -0.04 -25.83 16 16 C 0.14 3.80 0.71 44.13 0.03 3.83 16 17 C -0.10 -1.94 6.28 31.46 0.20 -1.74 16 18 C -0.14 -2.91 6.81 30.63 0.21 -2.70 16 19 C 0.54 16.41 8.38 87.63 0.73 17.15 16 20 O -0.56 -21.35 18.03 -3.02 -0.05 -21.41 16 21 N -0.61 -17.34 2.91 -777.14 -2.26 -19.61 16 22 C 0.12 2.76 7.25 86.80 0.63 3.39 16 23 C -0.07 -1.39 7.55 72.47 0.55 -0.84 16 24 S -0.22 -4.86 22.28 -56.49 -1.26 -6.12 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.02 1.05 7.85 -2.39 -0.02 1.03 16 27 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 28 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 30 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.40 12.94 8.05 -92.71 -0.75 12.20 16 32 H 0.11 2.06 7.39 -2.39 -0.02 2.04 16 33 H 0.13 1.85 7.87 -2.39 -0.02 1.83 16 34 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -70.56 328.11 1.21 -69.34 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.33 Total: 23.36 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 4.38 Total: 16.40 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -4.16 Total: -98.18 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.10 Total: -47.24 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -1.26 Total: -6.12 kcal Total: -70.56 1.21 -69.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546585160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.354 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds