Wall clock time and date at job start Tue Mar 31 2020 03:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.32566 * 121.65400 * 2 1 4 4 S 1.77229 * 105.32386 * 180.19663 * 3 2 1 5 5 C 1.72209 * 94.84681 * 359.76444 * 4 3 2 6 6 O 1.21828 * 127.05642 * 180.02562 * 5 4 3 7 7 N 1.34243 * 105.88537 * 359.97438 * 5 4 3 8 8 C 1.46502 * 121.38229 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47245 * 90.02041 * 8 7 5 10 10 N 1.46905 * 109.47012 * 179.97438 * 9 8 7 11 11 C 1.48527 * 111.00154 * 287.39988 * 10 9 8 12 12 C 1.55196 * 103.23670 * 200.25513 * 11 10 9 13 13 C 1.54597 * 102.80223 * 37.43449 * 12 11 10 14 14 O 1.42895 * 110.31095 * 219.05201 * 13 12 11 15 15 C 1.50694 * 110.30944 * 96.97985 * 13 12 11 16 16 H 1.08000 * 120.00563 * 242.79254 * 15 13 12 17 17 C 1.37885 * 119.99902 * 62.79091 * 15 13 12 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 13 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 13 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 C 1.47903 * 110.99580 * 170.00067 * 10 9 8 24 24 H 1.09006 * 109.47531 * 270.24582 * 1 2 3 25 25 H 1.09002 * 109.47321 * 30.23658 * 1 2 3 26 26 H 1.09003 * 109.47587 * 150.24102 * 1 2 3 27 27 H 1.08000 * 127.33340 * 359.93931 * 3 2 1 28 28 H 1.08998 * 109.46823 * 330.02129 * 8 7 5 29 29 H 1.08999 * 109.47244 * 210.02686 * 8 7 5 30 30 H 1.09002 * 109.46666 * 60.00395 * 9 8 7 31 31 H 1.08999 * 109.47526 * 300.00473 * 9 8 7 32 32 H 1.08993 * 110.66869 * 318.71179 * 11 10 9 33 33 H 1.09002 * 110.66781 * 81.67417 * 11 10 9 34 34 H 1.09004 * 110.76452 * 279.12820 * 12 11 10 35 35 H 1.08997 * 110.79862 * 155.76127 * 12 11 10 36 36 H 0.96703 * 114.00199 * 297.20807 * 14 13 12 37 37 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 38 38 H 1.08995 * 109.91658 * 26.49689 * 23 10 9 39 39 H 1.08998 * 109.91705 * 265.19747 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2026 1.1284 0.0000 4 16 3.9034 0.6301 -0.0059 5 6 3.5606 -1.0575 -0.0008 6 8 4.3672 -1.9705 -0.0017 7 7 2.2221 -1.1605 0.0054 8 6 1.5575 -2.4661 0.0105 9 6 1.3322 -2.9180 1.4548 10 7 0.6652 -4.2269 1.4598 11 6 -0.7572 -4.1011 1.0512 12 6 -1.4030 -5.3979 1.6079 13 6 -0.6728 -5.5924 2.9566 14 8 -0.4022 -6.9778 3.1789 15 6 -1.5012 -5.0345 4.0851 16 1 -1.1258 -4.2115 4.6751 17 6 -2.7387 -5.5748 4.3644 18 7 -3.4593 -5.0915 5.3527 19 14 -3.3879 -6.9987 3.3445 20 1 -2.9643 -8.2821 3.9600 21 1 -4.8708 -6.9381 3.2971 22 1 -2.8444 -6.9080 1.9654 23 6 0.6441 -4.8057 2.8208 24 1 -0.3634 0.0044 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3634 -0.8921 -0.5101 27 1 1.8153 2.1366 -0.0009 28 1 2.1836 -3.1945 -0.5047 29 1 0.5974 -2.3871 -0.4995 30 1 0.7060 -2.1896 1.9699 31 1 2.2923 -2.9971 1.9648 32 1 -1.2112 -3.2199 1.5043 33 1 -0.8434 -4.0614 -0.0347 34 1 -1.2142 -6.2402 0.9422 35 1 -2.4729 -5.2610 1.7647 36 1 -1.1950 -7.5267 3.2512 37 1 -4.3300 -5.4714 5.5489 38 1 0.6790 -4.0089 3.5637 39 1 1.4928 -5.4769 2.9520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592145167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:11 Heat of formation + Delta-G solvation = -23.564505 kcal Electronic energy + Delta-G solvation = -22546.253991 eV Core-core repulsion = 19195.802533 eV Total energy + Delta-G solvation = -3350.451459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14961 -38.80322 -37.67590 -35.61474 -32.99426 -32.44904 -31.28632 -29.50995 -28.17454 -27.04476 -24.86503 -23.86114 -22.72938 -21.04283 -20.25042 -19.67925 -18.20808 -17.24961 -17.19271 -16.39904 -15.91779 -15.55596 -15.16184 -14.70430 -14.43757 -14.13274 -13.90171 -13.84421 -13.54054 -13.49741 -12.96892 -12.64128 -12.57794 -12.21159 -12.02452 -11.82816 -11.60927 -11.32936 -11.23744 -10.93273 -10.79202 -10.55119 -10.19778 -10.12670 -9.89349 -9.66465 -9.26730 -8.85381 -8.56900 -8.11398 -8.03647 -6.34525 -4.39666 0.82308 1.21431 1.63849 2.03547 2.61089 3.05322 3.11891 3.19834 4.12417 4.17186 4.47005 4.62351 4.80888 4.88992 4.97814 5.14253 5.17031 5.31259 5.34383 5.37699 5.46729 5.51182 5.56925 5.75909 5.89753 5.91290 6.02867 6.09083 6.34610 6.53676 6.59752 6.62461 6.74600 6.89546 7.07747 7.19702 7.37229 7.53083 8.21035 8.66945 8.70185 9.24782 10.77965 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.003687 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.888276 B = 7592.909172 C = 7958.103561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.109 3.891 3 C -0.245 4.245 4 S -0.011 6.011 5 C 0.482 3.518 6 O -0.469 6.469 7 N -0.530 5.530 8 C 0.105 3.895 9 C 0.035 3.965 10 N -0.514 5.514 11 C 0.040 3.960 12 C -0.150 4.150 13 C 0.212 3.788 14 O -0.574 6.574 15 C -0.537 4.537 16 H 0.079 0.921 17 C 0.078 3.922 18 N -0.885 5.885 19 Si 0.843 3.157 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.233 1.233 23 C 0.065 3.935 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.191 0.809 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.350 0.650 37 H 0.268 0.732 38 H 0.054 0.946 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 11.802 -12.927 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.002 4.002 3 C -0.383 4.383 4 S 0.232 5.768 5 C 0.163 3.837 6 O -0.348 6.348 7 N -0.251 5.251 8 C -0.020 4.020 9 C -0.095 4.095 10 N -0.239 5.239 11 C -0.088 4.088 12 C -0.189 4.189 13 C 0.172 3.828 14 O -0.382 6.382 15 C -0.575 4.575 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.522 5.522 19 Si 0.670 3.330 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.157 1.157 23 C -0.062 4.062 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.208 0.792 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.200 0.800 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.965 11.736 -13.208 19.381 hybrid contribution -2.772 -1.024 0.346 2.975 sum 5.193 10.712 -12.862 17.525 Atomic orbital electron populations 1.20846 0.86535 1.04478 1.04496 1.19512 0.95966 0.84930 0.99788 1.24839 0.92981 1.01252 1.19231 1.85085 1.08838 1.01688 1.81223 1.21571 0.83841 0.95534 0.82717 1.90983 1.48601 1.42303 1.52936 1.46116 1.06370 1.08026 1.64591 1.21904 0.99051 0.81869 0.99154 1.22488 1.00348 0.91681 0.94938 1.64692 1.14472 1.19740 1.25005 1.23215 0.87773 0.98694 0.99073 1.23699 1.00282 0.96093 0.98807 1.19957 0.91439 0.79511 0.91915 1.86473 1.35609 1.20661 1.95506 1.21489 1.01437 1.19192 1.15362 0.90317 1.25031 0.96472 0.96395 0.94735 1.69889 1.12263 1.41398 1.28614 0.87778 0.78993 0.83178 0.83054 1.19894 1.21248 1.15696 1.22632 0.98747 0.97535 0.87313 0.89226 0.89152 0.90255 0.79235 0.87904 0.88752 0.93833 0.90570 0.93225 0.91363 0.92224 0.90709 0.80050 0.92217 0.92781 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.69 36.00 0.35 -0.37 16 2 C 0.11 1.03 6.59 -82.51 -0.54 0.48 16 3 C -0.24 -2.07 11.25 28.82 0.32 -1.75 16 4 S -0.01 -0.12 22.97 -107.50 -2.47 -2.59 16 5 C 0.48 6.76 8.27 53.82 0.45 7.21 16 6 O -0.47 -8.13 17.55 5.07 0.09 -8.04 16 7 N -0.53 -6.36 2.60 -117.28 -0.31 -6.67 16 8 C 0.11 1.30 5.36 -4.04 -0.02 1.27 16 9 C 0.04 0.52 5.03 -3.82 -0.02 0.50 16 10 N -0.51 -8.97 5.24 -230.28 -1.21 -10.18 16 11 C 0.04 0.67 5.92 -1.76 -0.01 0.66 16 12 C -0.15 -3.05 4.24 -24.73 -0.10 -3.15 16 13 C 0.21 4.89 0.96 -90.41 -0.09 4.80 16 14 O -0.57 -13.77 12.91 -35.23 -0.45 -14.22 16 15 C -0.54 -14.36 8.84 -34.44 -0.30 -14.66 16 16 H 0.08 2.30 7.59 -52.49 -0.40 1.90 16 17 C 0.08 2.10 5.36 -17.82 -0.10 2.00 16 18 N -0.88 -25.57 13.96 55.43 0.77 -24.79 16 19 Si 0.84 18.97 23.21 -169.99 -3.94 15.03 16 20 H -0.27 -6.07 7.03 56.52 0.40 -5.68 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.23 -4.78 4.45 56.52 0.25 -4.53 16 23 C 0.06 1.35 6.14 -2.75 -0.02 1.33 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.42 8.10 -51.93 -0.42 -0.01 16 26 H 0.08 0.55 6.18 -51.93 -0.32 0.23 16 27 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.10 1.39 7.80 -51.93 -0.41 0.99 16 29 H 0.09 0.97 5.34 -51.93 -0.28 0.69 16 30 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 31 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 32 H 0.05 0.83 7.81 -51.93 -0.41 0.43 16 33 H 0.07 0.95 7.80 -51.93 -0.40 0.55 16 34 H 0.06 1.18 7.83 -51.93 -0.41 0.77 16 35 H 0.07 1.56 5.14 -51.93 -0.27 1.30 16 36 H 0.35 7.99 4.53 45.56 0.21 8.19 16 37 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.05 1.14 7.02 -51.93 -0.36 0.78 16 39 H 0.08 1.61 7.96 -51.93 -0.41 1.20 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -31.24 318.20 -7.65 -38.89 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.84 Total: 9.45 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.09 Total: -1.67 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.74 Total: -41.64 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.37 Total: -22.27 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -3.94 Total: 15.03 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.47 Total: -2.59 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.24 -7.65 -38.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592145167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.321 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds