Wall clock time and date at job start Tue Mar 31 2020 03:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.32566 * 121.65400 * 2 1 4 4 S 1.77229 * 105.32386 * 180.19663 * 3 2 1 5 5 C 1.72209 * 94.84681 * 359.76444 * 4 3 2 6 6 O 1.21828 * 127.05642 * 180.02562 * 5 4 3 7 7 N 1.34243 * 105.88537 * 359.97438 * 5 4 3 8 8 C 1.46502 * 121.38229 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47245 * 90.02041 * 8 7 5 10 10 N 1.46905 * 109.47012 * 179.97438 * 9 8 7 11 11 C 1.48527 * 111.00154 * 287.39988 * 10 9 8 12 12 C 1.55196 * 103.23670 * 200.25513 * 11 10 9 13 13 C 1.54597 * 102.80223 * 37.43449 * 12 11 10 14 14 O 1.42895 * 110.31095 * 219.05201 * 13 12 11 15 15 C 1.50694 * 110.30944 * 96.97985 * 13 12 11 16 16 H 1.08000 * 120.00563 * 242.79254 * 15 13 12 17 17 C 1.37885 * 119.99902 * 62.79091 * 15 13 12 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 13 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 13 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 C 1.47903 * 110.99580 * 170.00067 * 10 9 8 24 24 H 1.09006 * 109.47531 * 270.24582 * 1 2 3 25 25 H 1.09002 * 109.47321 * 30.23658 * 1 2 3 26 26 H 1.09003 * 109.47587 * 150.24102 * 1 2 3 27 27 H 1.08000 * 127.33340 * 359.93931 * 3 2 1 28 28 H 1.08998 * 109.46823 * 330.02129 * 8 7 5 29 29 H 1.08999 * 109.47244 * 210.02686 * 8 7 5 30 30 H 1.09002 * 109.46666 * 60.00395 * 9 8 7 31 31 H 1.08999 * 109.47526 * 300.00473 * 9 8 7 32 32 H 1.08993 * 110.66869 * 318.71179 * 11 10 9 33 33 H 1.09002 * 110.66781 * 81.67417 * 11 10 9 34 34 H 1.09004 * 110.76452 * 279.12820 * 12 11 10 35 35 H 1.08997 * 110.79862 * 155.76127 * 12 11 10 36 36 H 0.96703 * 114.00199 * 297.20807 * 14 13 12 37 37 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 38 38 H 1.08995 * 109.91658 * 26.49689 * 23 10 9 39 39 H 1.08998 * 109.91705 * 265.19747 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2026 1.1284 0.0000 4 16 3.9034 0.6301 -0.0059 5 6 3.5606 -1.0575 -0.0008 6 8 4.3672 -1.9705 -0.0017 7 7 2.2221 -1.1605 0.0054 8 6 1.5575 -2.4661 0.0105 9 6 1.3322 -2.9180 1.4548 10 7 0.6652 -4.2269 1.4598 11 6 -0.7572 -4.1011 1.0512 12 6 -1.4030 -5.3979 1.6079 13 6 -0.6728 -5.5924 2.9566 14 8 -0.4022 -6.9778 3.1789 15 6 -1.5012 -5.0345 4.0851 16 1 -1.1258 -4.2115 4.6751 17 6 -2.7387 -5.5748 4.3644 18 7 -3.4593 -5.0915 5.3527 19 14 -3.3879 -6.9987 3.3445 20 1 -2.9643 -8.2821 3.9600 21 1 -4.8708 -6.9381 3.2971 22 1 -2.8444 -6.9080 1.9654 23 6 0.6441 -4.8057 2.8208 24 1 -0.3634 0.0044 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3634 -0.8921 -0.5101 27 1 1.8153 2.1366 -0.0009 28 1 2.1836 -3.1945 -0.5047 29 1 0.5974 -2.3871 -0.4995 30 1 0.7060 -2.1896 1.9699 31 1 2.2923 -2.9971 1.9648 32 1 -1.2112 -3.2199 1.5043 33 1 -0.8434 -4.0614 -0.0347 34 1 -1.2142 -6.2402 0.9422 35 1 -2.4729 -5.2610 1.7647 36 1 -1.1950 -7.5267 3.2512 37 1 -4.3300 -5.4714 5.5489 38 1 0.6790 -4.0089 3.5637 39 1 1.4928 -5.4769 2.9520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592145167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:11 Heat of formation + Delta-G solvation = -48.735931 kcal Electronic energy + Delta-G solvation = -22547.345506 eV Core-core repulsion = 19195.802533 eV Total energy + Delta-G solvation = -3351.542974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.08349 -40.39264 -38.70574 -37.24788 -34.56055 -34.03477 -32.39189 -30.69983 -29.79457 -28.18036 -26.41135 -25.08589 -23.87247 -22.38655 -21.50515 -21.18639 -19.20664 -19.05100 -18.25510 -17.75140 -17.48335 -16.97030 -16.28602 -15.89084 -15.73073 -15.42356 -15.12728 -15.08270 -14.69159 -14.59752 -14.44144 -14.14501 -13.87940 -13.57411 -13.29409 -13.15566 -12.98217 -12.54538 -12.42059 -12.25820 -12.16942 -12.06426 -11.91001 -11.57700 -11.19177 -11.11353 -10.79186 -10.60370 -10.45185 -9.50135 -8.96459 -8.42755 -6.54883 -0.12118 0.37560 0.85427 1.12228 1.27680 1.31840 1.40473 1.71640 2.21273 2.81704 2.96314 3.53056 3.59905 3.72020 3.83179 3.86582 4.07656 4.16668 4.28410 4.39746 4.40601 4.54751 4.58956 4.67858 4.74830 4.75282 4.81401 4.91657 5.01100 5.01744 5.14403 5.20385 5.29548 5.34586 5.73391 5.78180 5.95418 6.15768 6.24374 6.51301 6.87200 7.14472 8.72994 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.003687 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.888276 B = 7592.909172 C = 7958.103561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.091 3.909 3 C -0.224 4.224 4 S -0.001 6.001 5 C 0.460 3.540 6 O -0.521 6.521 7 N -0.530 5.530 8 C 0.114 3.886 9 C 0.042 3.958 10 N -0.510 5.510 11 C 0.045 3.955 12 C -0.150 4.150 13 C 0.203 3.797 14 O -0.583 6.583 15 C -0.546 4.546 16 H 0.033 0.967 17 C 0.024 3.976 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.196 1.196 23 C 0.068 3.932 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.082 0.918 27 H 0.229 0.771 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.355 0.645 37 H 0.270 0.730 38 H 0.037 0.963 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 12.647 -15.757 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.019 4.019 3 C -0.361 4.361 4 S 0.241 5.759 5 C 0.143 3.857 6 O -0.404 6.404 7 N -0.250 5.250 8 C -0.011 4.011 9 C -0.088 4.088 10 N -0.235 5.235 11 C -0.082 4.082 12 C -0.189 4.189 13 C 0.164 3.836 14 O -0.392 6.392 15 C -0.584 4.584 16 H 0.051 0.949 17 C -0.176 4.176 18 N -0.573 5.573 19 Si 0.728 3.272 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.118 1.118 23 C -0.060 4.060 24 H 0.104 0.896 25 H 0.138 0.862 26 H 0.101 0.899 27 H 0.245 0.755 28 H 0.108 0.892 29 H 0.142 0.858 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.205 0.795 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.809 12.631 -16.054 21.533 hybrid contribution -2.369 -1.118 1.339 2.942 sum 4.440 11.514 -14.715 19.205 Atomic orbital electron populations 1.20957 0.84278 1.06137 1.04706 1.20013 0.97285 0.84117 1.00460 1.25421 0.90793 1.02648 1.17214 1.85075 1.11145 0.99239 1.80396 1.22029 0.84294 0.96385 0.82961 1.90942 1.49980 1.44189 1.55332 1.46160 1.05979 1.08784 1.64104 1.21760 1.00187 0.82068 0.97056 1.22432 0.99000 0.90515 0.96842 1.64708 1.15265 1.21211 1.22342 1.23296 0.86553 0.96879 1.01455 1.23606 0.99791 0.98466 0.97008 1.20041 0.92280 0.79021 0.92287 1.86463 1.36103 1.20952 1.95690 1.21660 1.02206 1.18264 1.16273 0.94850 1.25919 0.96504 0.99323 0.95861 1.70045 1.12922 1.43483 1.30825 0.86774 0.78143 0.79074 0.83220 1.19330 1.21254 1.11820 1.22472 0.97460 0.96943 0.89101 0.89619 0.86210 0.89935 0.75473 0.89174 0.85781 0.93547 0.92620 0.93253 0.87077 0.90732 0.91189 0.79529 0.92076 0.94481 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.69 71.23 0.69 -0.32 16 2 C 0.09 1.44 6.59 40.71 0.27 1.71 16 3 C -0.22 -3.02 11.25 66.67 0.75 -2.27 16 4 S 0.00 -0.03 22.97 -56.49 -1.30 -1.33 16 5 C 0.46 12.86 8.27 129.87 1.07 13.93 16 6 O -0.52 -18.74 17.55 -4.76 -0.08 -18.82 16 7 N -0.53 -11.97 2.60 -643.43 -1.68 -13.64 16 8 C 0.11 2.63 5.36 86.38 0.46 3.09 16 9 C 0.04 1.21 5.03 86.30 0.43 1.64 16 10 N -0.51 -17.13 5.24 -882.48 -4.63 -21.76 16 11 C 0.05 1.38 5.92 86.74 0.51 1.90 16 12 C -0.15 -5.68 4.24 31.89 0.14 -5.54 16 13 C 0.20 9.30 0.96 -10.66 -0.01 9.29 16 14 O -0.58 -27.36 12.91 -148.98 -1.92 -29.28 16 15 C -0.55 -29.97 8.84 25.60 0.23 -29.74 16 16 H 0.03 2.06 7.59 -2.91 -0.02 2.04 16 17 C 0.02 1.28 5.36 84.66 0.45 1.74 16 18 N -0.93 -55.47 13.96 21.45 0.30 -55.17 16 19 Si 0.90 38.44 23.21 68.60 1.59 40.03 16 20 H -0.27 -11.11 7.03 99.48 0.70 -10.41 16 21 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.20 -7.16 4.45 99.48 0.44 -6.72 16 23 C 0.07 2.86 6.14 86.45 0.53 3.39 16 24 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.12 0.50 8.10 -2.39 -0.02 0.48 16 26 H 0.08 0.79 6.18 -2.39 -0.01 0.77 16 27 H 0.23 1.26 8.06 -2.91 -0.02 1.24 16 28 H 0.09 2.35 7.80 -2.39 -0.02 2.34 16 29 H 0.12 2.09 5.34 -2.39 -0.01 2.08 16 30 H 0.05 1.32 7.83 -2.39 -0.02 1.30 16 31 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 32 H 0.05 1.53 7.81 -2.39 -0.02 1.51 16 33 H 0.11 2.52 7.80 -2.39 -0.02 2.50 16 34 H 0.07 2.62 7.83 -2.38 -0.02 2.60 16 35 H 0.07 2.71 5.14 -2.39 -0.01 2.70 16 36 H 0.36 15.50 4.53 -74.06 -0.34 15.16 16 37 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.04 1.64 7.02 -2.39 -0.02 1.62 16 39 H 0.07 2.96 7.96 -2.39 -0.02 2.94 16 Total: -1.00 -71.76 318.20 -1.72 -73.48 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.47 Total: 27.67 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.53 Total: -1.18 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -6.00 Total: -90.57 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.01 Total: -48.11 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.59 Total: 40.03 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.30 Total: -1.33 kcal Total: -71.76 -1.72 -73.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592145167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.743 kcal (2) G-P(sol) polarization free energy of solvation -71.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds