Wall clock time and date at job start Tue Mar 31 2020 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47560 * 2 1 4 4 C 1.53009 * 109.46898 * 240.00347 * 2 1 3 5 5 N 1.46500 * 109.46979 * 65.00071 * 4 2 1 6 6 C 1.34774 * 119.99630 * 180.02562 * 5 4 2 7 7 O 1.21349 * 120.00173 * 359.97438 * 6 5 4 8 8 C 1.49453 * 119.99846 * 180.02562 * 6 5 4 9 9 O 1.21353 * 120.00125 * 5.08748 * 8 6 5 10 10 N 1.34774 * 120.00102 * 185.09319 * 8 6 5 11 11 C 1.46494 * 120.00151 * 184.55658 * 10 8 6 12 12 C 1.53003 * 109.47491 * 184.70074 * 11 10 8 13 13 C 1.50708 * 115.54705 * 294.79992 * 12 11 10 14 14 H 1.07999 * 119.99435 * 121.52691 * 13 12 11 15 15 C 1.37869 * 119.99831 * 301.24568 * 13 12 11 16 16 N 1.31521 * 120.00014 * 173.16061 * 15 13 12 17 17 Si 1.86803 * 120.00258 * 353.16421 * 15 13 12 18 18 H 1.48495 * 109.47128 * 94.23742 * 17 15 13 19 19 H 1.48507 * 109.47100 * 214.23862 * 17 15 13 20 20 H 1.48500 * 109.46890 * 334.23636 * 17 15 13 21 21 C 1.53001 * 117.49727 * 80.46616 * 12 11 10 22 22 C 1.52994 * 117.50267 * 149.12521 * 12 11 10 23 23 C 1.50702 * 109.47122 * 120.00452 * 2 1 3 24 24 O 1.20827 * 119.99782 * 119.99648 * 23 2 1 25 25 O 1.34225 * 119.99958 * 299.99693 * 23 2 1 26 26 H 1.09007 * 109.46832 * 59.99699 * 1 2 3 27 27 H 1.08995 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46377 * 299.99857 * 1 2 3 29 29 H 1.09003 * 109.46714 * 305.00274 * 4 2 1 30 30 H 1.08994 * 109.47239 * 185.00150 * 4 2 1 31 31 H 0.96995 * 120.00213 * 0.02562 * 5 4 2 32 32 H 0.97001 * 120.00152 * 4.55797 * 10 8 6 33 33 H 1.08998 * 109.47592 * 64.70314 * 11 10 8 34 34 H 1.08995 * 109.47447 * 304.69904 * 11 10 8 35 35 H 0.97002 * 120.00052 * 180.02562 * 16 15 13 36 36 H 1.09004 * 117.49881 * 215.00573 * 21 12 11 37 37 H 1.08997 * 117.49907 * 0.02562 * 21 12 11 38 38 H 1.09000 * 117.50159 * 359.97438 * 22 12 11 39 39 H 1.08998 * 117.50086 * 144.97404 * 22 12 11 40 40 H 0.96697 * 117.00042 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6524 0.0355 -2.4424 6 6 1.9955 -0.4134 -3.6660 7 8 2.6258 -1.4441 -3.7795 8 6 1.6006 0.3588 -4.8831 9 8 1.0526 1.4353 -4.7674 10 7 1.8530 -0.1404 -6.1093 11 6 1.5575 0.6590 -7.3007 12 6 1.8240 -0.1764 -8.5546 13 6 3.2614 -0.5695 -8.7802 14 1 3.5311 -1.6129 -8.8502 15 6 4.2308 0.4030 -8.9029 16 7 5.4997 0.0626 -8.9647 17 14 3.7423 2.2043 -8.9813 18 1 3.8031 2.7934 -7.6195 19 1 4.6764 2.9320 -9.8776 20 1 2.3591 2.3195 -9.5092 21 6 0.7438 -1.1715 -8.9832 22 6 0.9678 0.1101 -9.7897 23 6 2.0324 -0.7105 1.2304 24 8 2.7270 -1.6929 1.1194 25 8 1.7082 -0.2520 2.4495 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.6053 -1.7198 -1.2953 30 1 3.1263 -0.7995 -1.2058 31 1 1.1489 0.8595 -2.3517 32 1 2.2304 -1.0291 -6.2029 33 1 2.1938 1.5438 -7.3118 34 1 0.5112 0.9641 -7.2832 35 1 6.1819 0.7469 -9.0507 36 1 1.0727 -2.1106 -9.4285 37 1 -0.1569 -1.2308 -8.3723 38 1 0.2142 0.8934 -9.7090 39 1 1.4441 0.0147 -10.7654 40 1 2.0536 -0.7412 3.2087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594528696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:37 Heat of formation + Delta-G solvation = -168.132925 kcal Electronic energy + Delta-G solvation = -23915.105593 eV Core-core repulsion = 20115.632306 eV Total energy + Delta-G solvation = -3799.473287 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86150 -41.35670 -39.84139 -38.66117 -37.48551 -36.94110 -35.15819 -34.29683 -33.66653 -29.27347 -28.13905 -27.26686 -25.85591 -24.12490 -23.14831 -21.72116 -21.41671 -21.07033 -19.66879 -19.12900 -18.32026 -18.14373 -17.52355 -17.32479 -16.96171 -16.72181 -16.35103 -16.19730 -15.72344 -15.39562 -14.94945 -14.81783 -14.72465 -14.53432 -14.12287 -13.92780 -13.78133 -13.20803 -13.01581 -12.82987 -12.69218 -12.63464 -12.50503 -12.23781 -12.16023 -12.07940 -11.55999 -11.49549 -11.08267 -10.82905 -10.74553 -10.44102 -10.36376 -10.08532 -8.31740 -6.35917 0.30917 1.12950 1.16950 1.31502 1.37520 1.48370 2.03351 2.11198 2.33358 2.68265 2.99230 3.30692 3.35190 3.48881 3.73000 3.96031 4.02142 4.25015 4.33844 4.43906 4.48497 4.53623 4.60723 4.71313 4.82306 4.86987 4.93792 5.03428 5.04302 5.20776 5.25505 5.29211 5.54145 5.57153 5.66862 5.90236 6.28233 6.37512 6.68912 6.72581 6.91201 6.94129 7.31370 8.83290 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.024114 B = 0.003147 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.850255 B = 8893.951937 C = 9149.853502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.144 0.856 4 C 0.131 3.869 5 N -0.682 5.682 6 C 0.512 3.488 7 O -0.541 6.541 8 C 0.501 3.499 9 O -0.548 6.548 10 N -0.673 5.673 11 C 0.155 3.845 12 C -0.048 4.048 13 C -0.483 4.483 14 H 0.039 0.961 15 C 0.028 3.972 16 N -0.942 5.942 17 Si 0.924 3.076 18 H -0.283 1.283 19 H -0.296 1.296 20 H -0.220 1.220 21 C -0.159 4.159 22 C -0.175 4.175 23 C 0.496 3.504 24 O -0.551 6.551 25 O -0.504 6.504 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.424 0.576 32 H 0.416 0.584 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.986 3.475 20.055 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.161 0.839 4 C 0.008 3.992 5 N -0.337 5.337 6 C 0.293 3.707 7 O -0.417 6.417 8 C 0.281 3.719 9 O -0.427 6.427 10 N -0.323 5.323 11 C 0.032 3.968 12 C -0.049 4.049 13 C -0.521 4.521 14 H 0.057 0.943 15 C -0.171 4.171 16 N -0.581 5.581 17 Si 0.749 3.251 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.142 1.142 21 C -0.196 4.196 22 C -0.213 4.213 23 C 0.339 3.661 24 O -0.441 6.441 25 O -0.317 6.317 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.264 0.736 32 H 0.253 0.747 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -13.705 3.506 19.674 24.232 hybrid contribution 1.090 0.108 0.200 1.113 sum -12.616 3.614 19.873 23.815 Atomic orbital electron populations 1.21865 0.89457 1.03779 1.05152 1.21123 1.00251 1.02044 0.87395 0.83856 1.21251 1.00751 0.95270 0.81952 1.45482 1.56121 1.28267 1.03874 1.20047 0.80429 0.85050 0.85201 1.90807 1.39375 1.24638 1.86906 1.20188 0.80420 0.86237 0.85035 1.90693 1.42888 1.22144 1.86976 1.45790 1.60863 1.20963 1.04658 1.21179 0.99750 0.92708 0.83205 1.19439 0.91904 1.01173 0.92388 1.20429 0.89811 0.93114 1.48696 0.94319 1.25700 0.94352 1.03187 0.93851 1.70045 1.01171 1.35367 1.51475 0.86149 0.80883 0.80356 0.77679 1.20996 1.22338 1.14179 1.22856 0.99340 0.93662 1.03699 1.23118 1.02680 0.99427 0.96109 1.23174 0.75827 0.81496 0.85600 1.90790 1.37566 1.27925 1.87861 1.84455 1.71796 1.58862 1.16607 0.89801 0.91979 0.88981 0.90596 0.91368 0.73647 0.74683 0.94022 0.89806 0.92613 0.90033 0.87795 0.88104 0.89958 0.70722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.00 71.98 0.65 -0.59 16 2 C -0.09 -1.07 2.86 -11.53 -0.03 -1.10 16 3 H 0.14 1.10 8.14 -2.39 -0.02 1.09 16 4 C 0.13 2.61 4.41 86.38 0.38 2.99 16 5 N -0.68 -15.07 5.28 -464.40 -2.45 -17.52 16 6 C 0.51 16.23 7.89 87.27 0.69 16.92 16 7 O -0.54 -20.68 16.50 -3.24 -0.05 -20.73 16 8 C 0.50 17.64 7.88 87.27 0.69 18.33 16 9 O -0.55 -19.75 16.47 -3.26 -0.05 -19.80 16 10 N -0.67 -25.98 5.46 -464.42 -2.54 -28.52 16 11 C 0.15 6.14 5.08 86.38 0.44 6.58 16 12 C -0.05 -2.02 0.85 -52.93 -0.04 -2.07 16 13 C -0.48 -25.99 9.19 25.60 0.24 -25.75 16 14 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 15 C 0.03 1.56 5.46 84.65 0.46 2.02 16 16 N -0.94 -57.97 13.96 21.45 0.30 -57.68 16 17 Si 0.92 43.37 24.69 68.60 1.69 45.07 16 18 H -0.28 -13.43 6.96 99.48 0.69 -12.74 16 19 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 20 H -0.22 -9.07 6.11 99.48 0.61 -8.46 16 21 C -0.16 -5.57 9.96 30.62 0.30 -5.27 16 22 C -0.18 -6.37 8.69 30.62 0.27 -6.10 16 23 C 0.50 7.40 7.63 71.24 0.54 7.94 16 24 O -0.55 -12.97 16.68 21.96 0.37 -12.60 16 25 O -0.50 -4.38 13.33 -51.37 -0.68 -5.06 16 26 H 0.08 0.63 7.18 -2.38 -0.02 0.62 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.53 8.11 -2.39 -0.02 0.52 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.64 7.96 -2.39 -0.02 1.62 16 31 H 0.42 7.29 7.14 -92.71 -0.66 6.62 16 32 H 0.42 16.79 7.83 -92.71 -0.73 16.06 16 33 H 0.04 1.83 4.27 -2.39 -0.01 1.82 16 34 H 0.08 2.91 8.06 -2.39 -0.02 2.89 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.43 0.53 9.10 -74.06 -0.67 -0.14 16 Total: -1.00 -75.01 344.44 0.09 -74.92 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -1.07 Total: 28.02 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 4.58 Total: 13.90 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -4.69 Total: -103.71 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.43 Total: -58.20 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.69 Total: 45.07 kcal Total: -75.01 0.09 -74.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594528696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.215 kcal (2) G-P(sol) polarization free energy of solvation -75.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds