Wall clock time and date at job start Tue Mar 31 2020 04:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 116.99735 * 2 1 4 4 O 1.20823 * 120.00071 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99919 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47038 * 179.97438 * 5 3 2 7 7 C 1.37103 * 119.99885 * 93.92800 * 6 5 3 8 8 H 1.08004 * 119.99979 * 153.87143 * 7 6 5 9 9 C 1.38946 * 120.00181 * 333.59968 * 7 6 5 10 10 N 1.31415 * 119.99574 * 357.02413 * 9 7 6 11 11 Si 1.86795 * 120.00471 * 177.02945 * 9 7 6 12 12 H 1.48499 * 109.46857 * 59.99396 * 11 9 7 13 13 H 1.48492 * 109.47465 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46842 * 299.99963 * 11 9 7 15 15 C 1.34777 * 120.00518 * 273.92674 * 6 5 3 16 16 O 1.21296 * 119.99575 * 355.47598 * 15 6 5 17 17 C 1.50695 * 120.00628 * 175.47412 * 15 6 5 18 18 H 1.08998 * 109.47109 * 37.37231 * 17 15 6 19 19 C 1.53001 * 109.46985 * 277.37751 * 17 15 6 20 20 C 1.52995 * 109.47570 * 157.37266 * 17 15 6 21 21 H 1.09001 * 110.21420 * 306.93463 * 20 17 15 22 22 C 1.54476 * 110.24700 * 184.99885 * 20 17 15 23 23 C 1.54635 * 101.76405 * 215.58692 * 22 20 17 24 24 C 1.51280 * 104.19546 * 24.79912 * 23 22 20 25 25 O 1.21285 * 124.94070 * 163.71354 * 24 23 22 26 26 N 1.34417 * 110.11588 * 343.74634 * 24 23 22 27 27 H 1.09006 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47774 * 300.00536 * 1 2 3 29 29 H 1.09001 * 109.47606 * 60.00785 * 1 2 3 30 30 H 1.09000 * 109.47302 * 60.00090 * 5 3 2 31 31 H 1.08991 * 109.47228 * 299.99600 * 5 3 2 32 32 H 0.97001 * 120.00111 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.47359 * 51.83978 * 19 17 15 34 34 H 1.08997 * 109.47250 * 171.84418 * 19 17 15 35 35 H 1.08997 * 109.46906 * 291.84104 * 19 17 15 36 36 H 1.08998 * 110.97325 * 333.70403 * 22 20 17 37 37 H 1.09002 * 110.97044 * 97.43154 * 22 20 17 38 38 H 1.09002 * 110.48552 * 143.48036 * 23 22 20 39 39 H 1.09005 * 110.48085 * 266.12099 * 23 22 20 40 40 H 0.96997 * 124.34831 * 179.59190 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9815 2.6799 -0.0002 7 6 4.2533 3.3149 1.1841 8 1 4.9333 4.1539 1.2033 9 6 3.6498 2.8829 2.3587 10 7 2.7740 1.9036 2.3256 11 14 4.0829 3.6940 3.9846 12 1 3.7498 5.1397 3.9208 13 1 3.3075 3.0556 5.0784 14 1 5.5355 3.5319 4.2471 15 6 4.0964 3.3481 -1.1649 16 8 3.9361 2.7655 -2.2167 17 6 4.4240 4.8190 -1.1608 18 1 5.1337 5.0309 -0.3611 19 6 3.1440 5.6259 -0.9336 20 6 5.0403 5.2082 -2.5059 21 1 5.8827 4.5562 -2.7369 22 6 5.4979 6.6833 -2.4775 23 6 5.1926 7.1360 -3.9243 24 6 4.0970 6.1990 -4.3828 25 8 3.3822 6.3842 -5.3450 26 7 4.0305 5.1318 -3.5683 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 3.9563 0.7807 -0.8891 31 1 3.9556 0.7811 0.8908 32 1 2.3523 1.6021 3.1455 33 1 2.6287 5.2489 -0.0501 34 1 3.3976 6.6756 -0.7861 35 1 2.4937 5.5279 -1.8029 36 1 4.9156 7.2586 -1.7577 37 1 6.5638 6.7571 -2.2619 38 1 4.8414 8.1679 -3.9350 39 1 6.0764 7.0262 -4.5528 40 1 3.3965 4.4047 -3.6695 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:44 Heat of formation + Delta-G solvation = -146.937338 kcal Electronic energy + Delta-G solvation = -25823.303395 eV Core-core repulsion = 22024.749218 eV Total energy + Delta-G solvation = -3798.554177 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37457 -39.39167 -38.37916 -36.41660 -35.38696 -34.61372 -32.34742 -31.60365 -30.96442 -28.50808 -26.67629 -26.31697 -24.99055 -23.42140 -21.06199 -20.21883 -19.92401 -19.22797 -17.19797 -16.64507 -16.58779 -16.36129 -16.06015 -15.50090 -15.21685 -14.68565 -14.47414 -14.29642 -13.90996 -13.48777 -13.25663 -13.10554 -12.89451 -12.49616 -12.44826 -12.33705 -11.78923 -11.57474 -11.47502 -11.34568 -11.27592 -11.06183 -10.87082 -10.79397 -10.67999 -10.56899 -10.35653 -9.82163 -9.57046 -9.53227 -9.08066 -8.65405 -8.61925 -7.99116 -6.57567 -4.19815 2.91827 3.02125 3.09922 3.11913 3.40936 3.70461 3.83314 3.93560 4.02713 4.39204 4.63720 4.68061 4.90727 5.00184 5.27967 5.37891 5.57513 5.68421 5.70032 5.76578 5.80102 5.87518 5.93208 5.95025 6.00980 6.18762 6.28024 6.36010 6.45567 6.52194 6.66611 6.87971 7.20095 7.24030 7.44280 7.52399 7.59139 8.12273 8.64804 8.87859 9.11279 9.24475 9.63586 10.49431 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.005809 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.715190 B = 4818.604516 C = 6124.452244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.377 6.377 3 C 0.490 3.510 4 O -0.504 6.504 5 C 0.159 3.841 6 N -0.426 5.426 7 C -0.334 4.334 8 H 0.102 0.898 9 C 0.043 3.957 10 N -0.877 5.877 11 Si 0.931 3.069 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.478 3.522 16 O -0.603 6.603 17 C -0.100 4.100 18 H 0.103 0.897 19 C -0.131 4.131 20 C 0.149 3.851 21 H 0.081 0.919 22 C -0.132 4.132 23 C -0.155 4.155 24 C 0.512 3.488 25 O -0.555 6.555 26 N -0.702 5.702 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.274 0.726 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 3.279 -0.942 5.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.332 3.668 4 O -0.389 6.389 5 C 0.033 3.967 6 N -0.144 5.144 7 C -0.462 4.462 8 H 0.119 0.881 9 C -0.162 4.162 10 N -0.516 5.516 11 Si 0.757 3.243 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.267 3.733 16 O -0.490 6.490 17 C -0.122 4.122 18 H 0.121 0.879 19 C -0.189 4.189 20 C 0.043 3.957 21 H 0.099 0.901 22 C -0.170 4.170 23 C -0.196 4.196 24 C 0.297 3.703 25 O -0.434 6.434 26 N -0.358 5.358 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.963 3.338 -1.750 5.469 hybrid contribution -0.461 -0.008 1.263 1.344 sum 3.502 3.330 -0.487 4.857 Atomic orbital electron populations 1.22903 0.78815 1.01711 1.01528 1.86448 1.21562 1.35619 1.85792 1.23777 0.92173 0.80509 0.70360 1.90494 1.66494 1.36343 1.45581 1.20407 0.87290 0.85646 1.03310 1.43256 1.57424 1.07981 1.05731 1.19555 1.26129 1.16671 0.83810 0.88062 1.25315 0.94323 0.96318 1.00237 1.69523 1.25952 1.26904 1.29197 0.85923 0.78477 0.79380 0.80480 1.19701 1.20875 1.19730 1.20164 0.81280 0.88221 0.83635 1.90500 1.57364 1.69671 1.31430 1.21363 0.99879 0.94113 0.96852 0.87908 1.21583 0.96179 0.98031 1.03130 1.21522 0.90896 0.96165 0.87165 0.90113 1.22780 1.02752 0.95208 0.96286 1.22328 0.99162 1.00457 0.97621 1.20872 0.84279 0.83000 0.82113 1.90709 1.47205 1.76997 1.28475 1.46444 1.36605 1.23739 1.29006 0.89702 0.92723 0.93249 0.90366 0.86007 0.91468 0.90540 0.92842 0.92909 0.89426 0.89311 0.88516 0.88252 0.73768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.78 10.55 101.05 1.07 1.85 16 2 O -0.38 -8.02 10.57 -39.26 -0.41 -8.44 16 3 C 0.49 11.78 5.88 36.00 0.21 11.99 16 4 O -0.50 -13.47 15.52 -18.75 -0.29 -13.76 16 5 C 0.16 3.63 5.21 -5.19 -0.03 3.61 16 6 N -0.43 -9.81 2.14 -116.10 -0.25 -10.06 16 7 C -0.33 -7.61 8.59 -14.93 -0.13 -7.73 16 8 H 0.10 2.10 6.10 -52.48 -0.32 1.78 16 9 C 0.04 0.99 5.24 -17.47 -0.09 0.90 16 10 N -0.88 -21.58 8.40 55.50 0.47 -21.11 16 11 Si 0.93 18.26 29.55 -169.99 -5.02 13.24 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 15 C 0.48 10.38 6.62 -10.99 -0.07 10.31 16 16 O -0.60 -14.18 14.18 5.54 0.08 -14.10 16 17 C -0.10 -1.73 1.90 -91.78 -0.17 -1.90 16 18 H 0.10 1.64 6.31 -51.93 -0.33 1.31 16 19 C -0.13 -2.30 8.72 37.16 0.32 -1.98 16 20 C 0.15 2.20 2.85 -67.01 -0.19 2.01 16 21 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 22 C -0.13 -1.44 6.54 -25.10 -0.16 -1.60 16 23 C -0.16 -1.80 6.86 -26.74 -0.18 -1.99 16 24 C 0.51 8.51 8.43 -10.86 -0.09 8.42 16 25 O -0.55 -11.38 18.03 5.55 0.10 -11.28 16 26 N -0.70 -11.92 4.37 -52.76 -0.23 -12.15 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.08 1.69 7.48 -51.93 -0.39 1.31 16 31 H 0.12 2.78 6.67 -51.93 -0.35 2.44 16 32 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.08 1.57 7.76 -51.93 -0.40 1.17 16 34 H 0.05 0.76 6.64 -51.93 -0.34 0.42 16 35 H 0.05 0.98 7.14 -51.93 -0.37 0.61 16 36 H 0.09 0.92 6.24 -51.93 -0.32 0.59 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.42 8.15 7.41 -40.82 -0.30 7.85 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -30.86 328.50 -5.36 -36.21 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.22 Total: 12.63 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 0.48 Total: 23.87 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.01 Total: -43.32 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -0.53 Total: -47.58 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.86 -5.36 -36.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.726 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds