Wall clock time and date at job start Tue Mar 31 2020 03:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47355 * 2 1 4 4 H 1.09004 * 109.46904 * 305.00390 * 3 2 1 5 5 N 1.46905 * 109.46540 * 64.99695 * 3 2 1 6 6 C 1.52998 * 109.47370 * 184.99744 * 3 2 1 7 7 N 1.46490 * 109.47156 * 184.99876 * 6 3 2 8 8 S 1.65598 * 120.00181 * 165.98370 * 7 6 3 9 9 O 1.42104 * 106.40679 * 176.35829 * 8 7 6 10 10 O 1.42101 * 106.40192 * 309.28174 * 8 7 6 11 11 C 1.76198 * 107.21657 * 62.81826 * 8 7 6 12 12 C 1.37644 * 120.13089 * 245.81715 * 11 8 7 13 13 C 1.38609 * 120.25149 * 179.97438 * 12 11 8 14 14 C 1.38658 * 120.50267 * 0.02562 * 13 12 11 15 15 C 1.37599 * 120.24391 * 0.02562 * 14 13 12 16 16 C 1.40697 * 120.12721 * 65.54463 * 11 8 7 17 17 C 1.41392 * 120.24467 * 359.97438 * 16 11 8 18 18 H 1.07999 * 120.00182 * 331.43545 * 17 16 11 19 19 C 1.39950 * 120.00246 * 151.43618 * 17 16 11 20 20 N 1.30824 * 119.99363 * 348.43631 * 19 17 16 21 21 Si 1.86797 * 120.00328 * 168.43807 * 19 17 16 22 22 H 1.48503 * 109.46989 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47228 * 119.99673 * 21 19 17 24 24 H 1.48499 * 109.46996 * 239.99826 * 21 19 17 25 25 H 1.09000 * 109.47336 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47294 * 299.99952 * 1 2 3 27 27 H 1.09005 * 109.47217 * 59.99963 * 1 2 3 28 28 H 1.09006 * 109.47249 * 239.99733 * 2 1 3 29 29 H 1.09005 * 109.47217 * 120.00037 * 2 1 3 30 30 H 1.00893 * 111.00015 * 296.04573 * 5 3 2 31 31 H 1.00900 * 110.99706 * 60.00590 * 5 3 2 32 32 H 1.09005 * 109.46897 * 65.00062 * 6 3 2 33 33 H 1.08999 * 109.47279 * 305.00464 * 6 3 2 34 34 H 0.96997 * 120.00230 * 345.71211 * 7 6 3 35 35 H 1.08000 * 119.87267 * 359.97438 * 12 11 8 36 36 H 1.07999 * 119.74892 * 179.97438 * 13 12 11 37 37 H 1.07992 * 119.87886 * 179.97438 * 14 13 12 38 38 H 1.08005 * 120.12419 * 179.97438 * 15 14 13 39 39 H 0.97006 * 119.99566 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6513 2.0992 1.2553 6 6 3.5649 1.4443 -0.1257 7 7 4.0630 2.8167 -0.0059 8 16 5.6765 3.0930 0.2442 9 8 5.8493 4.5035 0.2290 10 8 6.0584 2.2750 1.3416 11 6 6.5363 2.4713 -1.1625 12 6 7.3880 1.3979 -1.0330 13 6 8.0652 0.9064 -2.1380 14 6 7.8941 1.4888 -3.3847 15 6 7.0485 2.5635 -3.5374 16 6 6.3505 3.0666 -2.4238 17 6 5.4733 4.1658 -2.5702 18 1 4.6286 4.2749 -1.9061 19 6 5.6995 5.1126 -3.5757 20 7 6.8322 5.1134 -4.2303 21 14 4.3843 6.3750 -3.9830 22 1 3.2050 6.1618 -3.1060 23 1 4.9243 7.7408 -3.7637 24 1 3.9778 6.2256 -5.4034 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.6476 2.1683 1.3315 31 1 2.0422 1.6178 2.0513 32 1 3.8499 1.0377 -1.0960 33 1 3.9954 0.8311 0.6659 34 1 3.4484 3.5637 -0.0770 35 1 7.5292 0.9368 -0.0666 36 1 8.7319 0.0640 -2.0270 37 1 8.4271 1.0980 -4.2388 38 1 6.9169 3.0158 -4.5093 39 1 6.9892 5.7699 -4.9270 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601342324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:32 Heat of formation + Delta-G solvation = -73.307751 kcal Electronic energy + Delta-G solvation = -22803.533814 eV Core-core repulsion = 19450.925326 eV Total energy + Delta-G solvation = -3352.608488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -37.64657 -37.51384 -36.09275 -34.71898 -33.89876 -33.50741 -30.70223 -30.17769 -29.52115 -27.31239 -25.50419 -23.06205 -21.61766 -21.10966 -20.67986 -18.39685 -17.66347 -16.69058 -16.47187 -15.92555 -15.53161 -15.27004 -14.71751 -14.33477 -14.28153 -13.93516 -13.44495 -13.24085 -13.10857 -12.74125 -12.66542 -12.12844 -11.91005 -11.79225 -11.48143 -11.26783 -11.23813 -11.13108 -11.01108 -10.96184 -10.91570 -10.73228 -10.51839 -10.42169 -9.86796 -9.42564 -9.35598 -8.66616 -8.61981 -8.00164 -7.57228 -6.99882 -4.72504 1.65128 2.37187 2.74860 2.99455 3.06107 3.12972 3.80487 4.03749 4.43857 4.59858 4.72382 4.86918 4.90815 4.96699 5.32854 5.41399 5.43549 5.54767 5.71352 5.81691 5.83732 5.93841 6.05169 6.07117 6.19512 6.26745 6.41282 6.51338 6.81819 6.99139 7.12524 7.17125 7.34548 7.47251 7.52573 7.66767 7.81786 7.83737 7.93176 8.32757 8.53959 8.68326 9.92977 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.006541 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.990562 B = 4279.573770 C = 5125.409991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.161 4.161 3 C 0.085 3.915 4 H 0.088 0.912 5 N -0.838 5.838 6 C 0.133 3.867 7 N -1.109 6.109 8 S 2.703 3.297 9 O -0.966 6.966 10 O -1.002 7.002 11 C -0.776 4.776 12 C -0.004 4.004 13 C -0.252 4.252 14 C -0.078 4.078 15 C -0.159 4.159 16 C 0.186 3.814 17 C -0.444 4.444 18 H 0.089 0.911 19 C 0.079 3.921 20 N -0.778 5.778 21 Si 0.916 3.084 22 H -0.254 1.254 23 H -0.269 1.269 24 H -0.271 1.271 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.337 0.663 31 H 0.341 0.659 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.415 0.585 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.358 -6.484 2.769 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.201 4.201 3 C -0.029 4.029 4 H 0.106 0.894 5 N -0.368 5.368 6 C 0.005 3.995 7 N -0.866 5.866 8 S 2.800 3.200 9 O -0.957 6.957 10 O -0.992 6.992 11 C -0.871 4.871 12 C -0.024 4.024 13 C -0.272 4.272 14 C -0.096 4.096 15 C -0.179 4.179 16 C 0.181 3.819 17 C -0.472 4.472 18 H 0.107 0.893 19 C -0.141 4.141 20 N -0.401 5.401 21 Si 0.740 3.260 22 H -0.177 1.177 23 H -0.193 1.193 24 H -0.196 1.196 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.250 0.750 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.143 0.857 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.359 -5.440 3.103 11.261 hybrid contribution -0.974 -0.457 -0.879 1.389 sum -10.332 -5.896 2.224 12.103 Atomic orbital electron populations 1.21769 0.95745 1.01691 1.01745 1.22338 0.96259 0.98487 1.03032 1.21697 0.95104 0.92338 0.93720 0.89374 1.58788 1.15646 1.58408 1.03945 1.21113 0.93283 0.83630 1.01448 1.55364 1.27038 1.12640 1.91593 1.00983 0.72004 0.73186 0.73820 1.93538 1.84520 1.29879 1.87742 1.93431 1.82481 1.71167 1.52126 1.29958 1.24000 1.17539 1.15632 1.20257 0.92462 0.92414 0.97229 1.20483 1.08085 1.04761 0.93867 1.20895 0.97030 0.95814 0.95907 1.21525 1.00346 0.96500 0.99481 1.17015 0.87860 0.88327 0.88712 1.19906 1.10034 1.04604 1.12671 0.89316 1.25963 0.95873 0.98488 0.93814 1.69795 1.21599 1.31442 1.17264 0.86106 0.81145 0.79835 0.78947 1.17724 1.19345 1.19573 0.92696 0.92983 0.92452 0.90945 0.91739 0.84927 0.84606 0.91434 0.91380 0.75012 0.87502 0.88830 0.88895 0.85729 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.68 37.16 0.36 -0.84 16 2 C -0.16 -1.51 5.58 -26.73 -0.15 -1.66 16 3 C 0.08 0.97 2.93 -67.71 -0.20 0.77 16 4 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 5 N -0.84 -9.06 8.83 -4.66 -0.04 -9.10 16 6 C 0.13 1.97 5.85 -4.05 -0.02 1.95 16 7 N -1.11 -19.70 4.88 -10.62 -0.05 -19.76 16 8 S 2.70 60.20 4.96 -107.50 -0.53 59.66 16 9 O -0.97 -24.68 16.52 -57.17 -0.94 -25.62 16 10 O -1.00 -23.18 16.53 -57.17 -0.94 -24.13 16 11 C -0.78 -18.73 5.90 -38.87 -0.23 -18.96 16 12 C 0.00 -0.09 9.53 -39.66 -0.38 -0.46 16 13 C -0.25 -5.54 10.05 -39.29 -0.39 -5.94 16 14 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 15 C -0.16 -3.94 8.66 -38.87 -0.34 -4.28 16 16 C 0.19 4.75 5.55 -106.82 -0.59 4.16 16 17 C -0.44 -11.20 7.63 -37.74 -0.29 -11.49 16 18 H 0.09 2.11 5.82 -52.49 -0.31 1.80 16 19 C 0.08 1.93 5.24 -17.34 -0.09 1.84 16 20 N -0.78 -19.28 10.85 55.55 0.60 -18.68 16 21 Si 0.92 18.20 29.58 -169.99 -5.03 13.17 16 22 H -0.25 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.37 6.87 -51.93 -0.36 0.01 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.34 2.95 7.55 -39.30 -0.30 2.65 16 31 H 0.34 3.55 9.00 -39.29 -0.35 3.19 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.00 7.82 -51.93 -0.41 0.60 16 34 H 0.42 7.00 8.39 -34.46 -0.29 6.72 16 35 H 0.11 2.27 7.32 -52.49 -0.38 1.88 16 36 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.12 3.12 6.22 -52.48 -0.33 2.79 16 39 H 0.29 6.36 8.30 -40.82 -0.34 6.03 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -30.71 332.37 -9.89 -40.60 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -5.23 Total: 15.90 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: -2.72 Total: -37.06 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.51 Total: -47.54 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -1.89 Total: -49.75 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 16 Polarization: 60.20 SS G_CDS: -0.53 Total: 59.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.71 -9.89 -40.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.707 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds