Wall clock time and date at job start Tue Mar 31 2020 03:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47355 * 2 1 4 4 H 1.09004 * 109.46904 * 305.00390 * 3 2 1 5 5 N 1.46905 * 109.46540 * 64.99695 * 3 2 1 6 6 C 1.52998 * 109.47370 * 184.99744 * 3 2 1 7 7 N 1.46490 * 109.47156 * 184.99876 * 6 3 2 8 8 S 1.65598 * 120.00181 * 165.98370 * 7 6 3 9 9 O 1.42104 * 106.40679 * 176.35829 * 8 7 6 10 10 O 1.42101 * 106.40192 * 309.28174 * 8 7 6 11 11 C 1.76198 * 107.21657 * 62.81826 * 8 7 6 12 12 C 1.37644 * 120.13089 * 245.81715 * 11 8 7 13 13 C 1.38609 * 120.25149 * 179.97438 * 12 11 8 14 14 C 1.38658 * 120.50267 * 0.02562 * 13 12 11 15 15 C 1.37599 * 120.24391 * 0.02562 * 14 13 12 16 16 C 1.40697 * 120.12721 * 65.54463 * 11 8 7 17 17 C 1.41392 * 120.24467 * 359.97438 * 16 11 8 18 18 H 1.07999 * 120.00182 * 331.43545 * 17 16 11 19 19 C 1.39950 * 120.00246 * 151.43618 * 17 16 11 20 20 N 1.30824 * 119.99363 * 348.43631 * 19 17 16 21 21 Si 1.86797 * 120.00328 * 168.43807 * 19 17 16 22 22 H 1.48503 * 109.46989 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47228 * 119.99673 * 21 19 17 24 24 H 1.48499 * 109.46996 * 239.99826 * 21 19 17 25 25 H 1.09000 * 109.47336 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47294 * 299.99952 * 1 2 3 27 27 H 1.09005 * 109.47217 * 59.99963 * 1 2 3 28 28 H 1.09006 * 109.47249 * 239.99733 * 2 1 3 29 29 H 1.09005 * 109.47217 * 120.00037 * 2 1 3 30 30 H 1.00893 * 111.00015 * 296.04573 * 5 3 2 31 31 H 1.00900 * 110.99706 * 60.00590 * 5 3 2 32 32 H 1.09005 * 109.46897 * 65.00062 * 6 3 2 33 33 H 1.08999 * 109.47279 * 305.00464 * 6 3 2 34 34 H 0.96997 * 120.00230 * 345.71211 * 7 6 3 35 35 H 1.08000 * 119.87267 * 359.97438 * 12 11 8 36 36 H 1.07999 * 119.74892 * 179.97438 * 13 12 11 37 37 H 1.07992 * 119.87886 * 179.97438 * 14 13 12 38 38 H 1.08005 * 120.12419 * 179.97438 * 15 14 13 39 39 H 0.97006 * 119.99566 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6513 2.0992 1.2553 6 6 3.5649 1.4443 -0.1257 7 7 4.0630 2.8167 -0.0059 8 16 5.6765 3.0930 0.2442 9 8 5.8493 4.5035 0.2290 10 8 6.0584 2.2750 1.3416 11 6 6.5363 2.4713 -1.1625 12 6 7.3880 1.3979 -1.0330 13 6 8.0652 0.9064 -2.1380 14 6 7.8941 1.4888 -3.3847 15 6 7.0485 2.5635 -3.5374 16 6 6.3505 3.0666 -2.4238 17 6 5.4733 4.1658 -2.5702 18 1 4.6286 4.2749 -1.9061 19 6 5.6995 5.1126 -3.5757 20 7 6.8322 5.1134 -4.2303 21 14 4.3843 6.3750 -3.9830 22 1 3.2050 6.1618 -3.1060 23 1 4.9243 7.7408 -3.7637 24 1 3.9778 6.2256 -5.4034 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.6476 2.1683 1.3315 31 1 2.0422 1.6178 2.0513 32 1 3.8499 1.0377 -1.0960 33 1 3.9954 0.8311 0.6659 34 1 3.4484 3.5637 -0.0770 35 1 7.5292 0.9368 -0.0666 36 1 8.7319 0.0640 -2.0270 37 1 8.4271 1.0980 -4.2388 38 1 6.9169 3.0158 -4.5093 39 1 6.9892 5.7699 -4.9270 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601342324.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:31 Heat of formation + Delta-G solvation = -95.946318 kcal Electronic energy + Delta-G solvation = -22804.515496 eV Core-core repulsion = 19450.925326 eV Total energy + Delta-G solvation = -3353.590170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.36866 -38.60516 -37.93239 -36.60079 -35.67534 -34.78018 -32.01069 -31.47964 -31.33913 -28.39365 -27.32914 -24.01624 -23.41751 -22.91820 -21.63716 -20.07052 -19.48358 -18.35498 -17.93768 -17.23532 -17.11130 -16.84720 -16.01095 -15.87265 -15.46144 -15.05834 -14.98938 -14.86065 -14.47393 -14.43667 -13.78080 -13.57339 -13.29182 -13.17427 -12.96234 -12.89943 -12.85248 -12.80114 -12.76192 -12.48502 -12.20159 -12.09514 -11.74635 -11.69272 -11.63660 -11.19137 -11.11006 -10.12665 -9.82335 -9.50569 -9.41793 -8.78218 -6.59738 -0.08950 0.54653 0.97871 1.37243 1.50339 1.52989 2.17019 2.43472 2.65226 3.04978 3.49682 3.71466 3.79095 3.97363 4.08856 4.23456 4.34548 4.45306 4.50924 4.55570 4.72467 4.79008 4.83137 4.91062 4.99686 5.15252 5.16675 5.18322 5.31266 5.34946 5.40246 5.53727 5.72197 5.84619 6.01634 6.10168 6.29077 6.41386 6.49773 6.69544 6.72167 6.85006 8.17900 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.006541 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.990562 B = 4279.573770 C = 5125.409991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.093 3.907 4 H 0.087 0.913 5 N -0.846 5.846 6 C 0.124 3.876 7 N -1.096 6.096 8 S 2.721 3.279 9 O -1.004 7.004 10 O -1.012 7.012 11 C -0.793 4.793 12 C -0.017 4.017 13 C -0.251 4.251 14 C -0.076 4.076 15 C -0.186 4.186 16 C 0.161 3.839 17 C -0.473 4.473 18 H 0.093 0.907 19 C 0.037 3.963 20 N -0.809 5.809 21 Si 0.977 3.023 22 H -0.248 1.248 23 H -0.269 1.269 24 H -0.254 1.254 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.351 0.649 31 H 0.344 0.656 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.421 0.579 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -7.302 2.856 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C -0.020 4.020 4 H 0.105 0.895 5 N -0.378 5.378 6 C -0.002 4.002 7 N -0.857 5.857 8 S 2.817 3.183 9 O -0.994 6.994 10 O -1.002 7.002 11 C -0.886 4.886 12 C -0.037 4.037 13 C -0.271 4.271 14 C -0.095 4.095 15 C -0.206 4.206 16 C 0.157 3.843 17 C -0.501 4.501 18 H 0.111 0.889 19 C -0.180 4.180 20 N -0.433 5.433 21 Si 0.796 3.204 22 H -0.171 1.171 23 H -0.194 1.194 24 H -0.178 1.178 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.166 0.834 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.257 0.743 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.658 -6.279 3.183 12.773 hybrid contribution -0.511 -0.314 -0.856 1.045 sum -11.169 -6.592 2.327 13.176 Atomic orbital electron populations 1.21746 0.94317 1.02391 1.02173 1.22279 0.97406 0.96749 1.03169 1.21564 0.92428 0.93934 0.94096 0.89521 1.58744 1.16857 1.58524 1.03701 1.21387 0.95833 0.81714 1.01307 1.54985 1.25192 1.14280 1.91225 1.00286 0.72802 0.71994 0.73193 1.93479 1.85653 1.32169 1.88093 1.93407 1.83307 1.71133 1.52380 1.30233 1.24808 1.17804 1.15789 1.20582 0.92354 0.92349 0.98400 1.20890 1.07726 1.05232 0.93213 1.21247 0.96099 0.94793 0.97334 1.21587 1.02039 0.97908 0.99089 1.17325 0.88551 0.88990 0.89468 1.20180 1.10657 1.05365 1.13902 0.88875 1.26825 0.97755 1.00109 0.93333 1.69830 1.23019 1.32566 1.17929 0.85224 0.78601 0.76980 0.79589 1.17058 1.19433 1.17817 0.91876 0.92064 0.92541 0.91171 0.91305 0.83393 0.84267 0.91876 0.91222 0.74303 0.86041 0.85496 0.85983 0.86750 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.68 71.98 0.70 -1.30 16 2 C -0.16 -2.63 5.58 30.59 0.17 -2.46 16 3 C 0.09 2.00 2.93 44.91 0.13 2.13 16 4 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 5 N -0.85 -16.82 8.83 -168.66 -1.49 -18.31 16 6 C 0.12 3.60 5.85 86.38 0.51 4.10 16 7 N -1.10 -38.64 4.88 -187.51 -0.92 -39.56 16 8 S 2.72 121.81 4.96 -56.49 -0.28 121.53 16 9 O -1.00 -52.10 16.52 -128.00 -2.12 -54.22 16 10 O -1.01 -46.50 16.53 -128.00 -2.12 -48.62 16 11 C -0.79 -38.48 5.90 22.73 0.13 -38.35 16 12 C -0.02 -0.78 9.53 22.22 0.21 -0.56 16 13 C -0.25 -10.60 10.05 22.46 0.23 -10.38 16 14 C -0.08 -3.36 10.02 22.22 0.22 -3.13 16 15 C -0.19 -9.37 8.66 22.73 0.20 -9.17 16 16 C 0.16 8.39 5.55 -21.29 -0.12 8.27 16 17 C -0.47 -24.28 7.63 23.46 0.18 -24.10 16 18 H 0.09 4.50 5.82 -2.91 -0.02 4.48 16 19 C 0.04 1.83 5.24 85.26 0.45 2.28 16 20 N -0.81 -40.82 10.85 21.83 0.24 -40.59 16 21 Si 0.98 37.06 29.58 68.60 2.03 39.08 16 22 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 23 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 24 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.71 6.87 -2.39 -0.02 0.69 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.35 5.36 7.55 -89.70 -0.68 4.69 16 31 H 0.34 6.55 9.00 -89.69 -0.81 5.75 16 32 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.07 1.99 7.82 -2.39 -0.02 1.97 16 34 H 0.42 14.03 8.39 -96.75 -0.81 13.22 16 35 H 0.12 5.02 7.32 -2.91 -0.02 5.00 16 36 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 38 H 0.11 5.88 6.22 -2.91 -0.02 5.86 16 39 H 0.29 13.27 8.30 -92.70 -0.77 12.50 16 Total: -1.00 -65.77 332.37 -2.85 -68.62 By element: Atomic # 1 Polarization: 45.94 SS G_CDS: -1.20 Total: 44.74 kcal Atomic # 6 Polarization: -75.68 SS G_CDS: 3.00 Total: -72.68 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -2.17 Total: -98.45 kcal Atomic # 8 Polarization: -98.61 SS G_CDS: -4.23 Total: -102.84 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.08 kcal Atomic # 16 Polarization: 121.81 SS G_CDS: -0.28 Total: 121.53 kcal Total: -65.77 -2.85 -68.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601342324.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.329 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds