Wall clock time and date at job start Tue Mar 31 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99620 * 2 1 4 4 C 1.50704 * 109.47274 * 275.12062 * 3 2 1 5 5 H 1.08001 * 119.99759 * 355.07473 * 4 3 2 6 6 C 1.37872 * 120.00242 * 175.07758 * 4 3 2 7 7 N 1.31518 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00141 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47355 * 60.00077 * 8 6 4 10 10 H 1.48509 * 109.47061 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47548 * 299.99742 * 8 6 4 12 12 S 1.65599 * 120.00514 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.39939 * 17.73496 * 12 2 1 14 14 O 1.42096 * 106.40425 * 150.65276 * 12 2 1 15 15 N 1.65601 * 107.21646 * 264.19656 * 12 2 1 16 16 C 1.46500 * 120.00023 * 64.39051 * 15 12 2 17 17 H 1.08997 * 110.01925 * 22.59446 * 16 15 12 18 18 C 1.54264 * 110.02931 * 261.15463 * 16 15 12 19 19 C 1.54892 * 104.19674 * 217.10610 * 18 16 15 20 20 C 1.54895 * 102.74633 * 37.94235 * 19 18 16 21 21 F 1.39889 * 110.48465 * 203.37874 * 20 19 18 22 22 F 1.39899 * 110.48395 * 80.73533 * 20 19 18 23 23 C 1.53873 * 110.03125 * 143.99110 * 16 15 12 24 24 H 1.09001 * 109.47003 * 269.99438 * 1 2 3 25 25 H 1.08999 * 109.47468 * 29.99825 * 1 2 3 26 26 H 1.09002 * 109.46800 * 150.00109 * 1 2 3 27 27 H 1.08992 * 109.47331 * 35.12462 * 3 2 1 28 28 H 1.09003 * 109.46835 * 155.12278 * 3 2 1 29 29 H 0.97002 * 120.00195 * 179.97438 * 7 6 4 30 30 H 0.97004 * 119.99524 * 244.38501 * 15 12 2 31 31 H 1.08998 * 110.48729 * 335.78628 * 18 16 15 32 32 H 1.09000 * 110.48595 * 98.43006 * 18 16 15 33 33 H 1.08993 * 110.75588 * 279.62997 * 19 18 16 34 34 H 1.09000 * 110.91217 * 156.33133 * 19 18 16 35 35 H 1.09000 * 110.03021 * 238.56998 * 23 16 15 36 36 H 1.09002 * 110.03333 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3387 1.7673 -1.4152 5 1 1.9954 1.1589 -2.2388 6 6 2.9064 3.0000 -1.6584 7 7 3.3250 3.7406 -0.6555 8 14 3.0809 3.6181 -3.4124 9 1 1.7384 3.7112 -4.0404 10 1 3.7167 4.9602 -3.4034 11 1 3.9258 2.6749 -4.1880 12 16 2.2931 -1.4341 -0.0006 13 8 1.3693 -2.4306 -0.4163 14 8 3.5227 -1.1871 -0.6686 15 7 2.6767 -1.7792 1.5729 16 6 1.6130 -2.0394 2.5460 17 1 0.7065 -2.3584 2.0317 18 6 1.3323 -0.7687 3.3744 19 6 1.0367 -1.3011 4.7985 20 6 2.0401 -2.4725 4.9406 21 9 1.5917 -3.3878 5.8987 22 9 3.3098 -1.9913 5.2777 23 6 2.0631 -3.1227 3.5419 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6512 2.0037 0.5912 28 1 3.1865 1.1173 0.4323 29 1 3.7247 4.6077 -0.8266 30 1 3.6058 -1.8092 1.8502 31 1 2.2072 -0.1186 3.3841 32 1 0.4663 -0.2385 2.9780 33 1 0.0103 -1.6608 4.8711 34 1 1.2296 -0.5341 5.5485 35 1 1.3746 -3.9672 3.5113 36 1 3.0728 -3.4552 3.3008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610785397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:00 Heat of formation + Delta-G solvation = -183.661592 kcal Electronic energy + Delta-G solvation = -23456.369317 eV Core-core repulsion = 19544.745998 eV Total energy + Delta-G solvation = -3911.623319 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.02472 -47.15857 -38.21438 -36.63136 -35.53101 -35.23214 -33.02856 -32.46124 -29.09853 -27.83006 -26.78740 -25.09049 -22.33474 -21.42490 -21.11610 -19.25895 -17.81980 -17.32220 -17.10093 -16.72782 -16.40495 -16.06675 -15.85826 -15.11976 -14.38902 -14.26396 -14.18654 -13.56299 -13.52812 -13.44181 -13.36818 -12.91727 -12.71614 -12.33103 -12.20594 -12.01709 -11.83662 -11.65318 -11.55164 -11.32216 -11.20446 -11.18244 -11.09621 -10.75869 -10.70265 -10.53245 -10.04982 -9.80652 -9.46977 -8.47050 -8.11815 -6.09028 -4.12934 1.15548 3.32386 3.33839 3.36067 3.41206 3.55567 3.67210 3.90578 4.10940 4.23823 4.42961 4.78130 4.86940 4.88565 4.98080 5.09086 5.12472 5.26404 5.34279 5.47105 5.56076 5.61288 5.71577 5.84777 6.05037 6.14777 6.27991 6.51861 7.02142 7.20227 7.38486 7.55224 7.88452 8.17573 8.89669 9.52440 10.99367 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.004486 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.963313 B = 6240.566916 C = 6647.529279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.994 5.994 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.780 3.220 13 O -0.999 6.999 14 O -0.962 6.962 15 N -1.127 6.127 16 C 0.155 3.845 17 H 0.105 0.895 18 C -0.145 4.145 19 C -0.156 4.156 20 C 0.277 3.723 21 F -0.200 7.200 22 F -0.193 7.193 23 C -0.167 4.167 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.264 0.736 30 H 0.414 0.586 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 -10.641 11.724 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.837 5.837 3 C 0.137 3.863 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.788 3.212 13 O -0.982 6.982 14 O -0.946 6.946 15 N -0.885 5.885 16 C 0.046 3.954 17 H 0.123 0.877 18 C -0.184 4.184 19 C -0.194 4.194 20 C 0.240 3.760 21 F -0.181 7.181 22 F -0.173 7.173 23 C -0.207 4.207 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.248 0.752 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.837 -11.002 10.959 16.589 hybrid contribution 0.615 0.672 -0.255 0.946 sum -5.222 -10.329 10.704 15.765 Atomic orbital electron populations 1.21377 0.80138 1.03573 1.00144 1.57579 1.14253 1.23236 1.88676 1.19026 0.90762 0.78813 0.97671 1.21460 1.40182 1.02406 0.92728 0.92217 1.24923 0.95131 0.96491 0.97456 1.69906 1.40960 1.11988 1.30743 0.86576 0.78455 0.77849 0.84682 1.20194 1.21202 1.19989 1.01987 0.73409 0.73017 0.72812 1.93524 1.65309 1.58665 1.80707 1.93654 1.44867 1.85283 1.70799 1.56444 1.14727 1.87671 1.29628 1.21203 0.90797 0.93570 0.89821 0.87712 1.23014 1.04555 0.98018 0.92798 1.23447 0.99358 0.96810 0.99801 1.21930 0.80013 0.87646 0.86372 1.92997 1.89031 1.68779 1.67245 1.93027 1.42088 1.88636 1.93599 1.23457 1.05982 0.99715 0.91543 0.94357 0.90290 0.91564 0.94346 0.94963 0.92634 0.75210 0.88995 0.88954 0.88066 0.88717 0.87572 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 10.64 59.85 0.64 2.12 16 2 N -0.99 -19.10 3.23 -123.05 -0.40 -19.50 16 3 C 0.26 6.16 5.07 -5.19 -0.03 6.13 16 4 C -0.53 -14.46 9.38 -34.44 -0.32 -14.78 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -25.60 13.29 55.43 0.74 -24.86 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 S 2.78 51.40 6.04 -107.50 -0.65 50.75 16 13 O -1.00 -19.28 16.04 -57.17 -0.92 -20.20 16 14 O -0.96 -22.14 17.32 -57.17 -0.99 -23.13 16 15 N -1.13 -15.30 5.45 -3.94 -0.02 -15.32 16 16 C 0.15 1.69 3.60 -66.81 -0.24 1.45 16 17 H 0.10 1.08 7.55 -51.93 -0.39 0.69 16 18 C -0.14 -1.47 6.53 -25.07 -0.16 -1.63 16 19 C -0.16 -1.32 6.49 -24.73 -0.16 -1.48 16 20 C 0.28 2.81 2.49 -25.07 -0.06 2.75 16 21 F -0.20 -2.19 17.16 2.25 0.04 -2.15 16 22 F -0.19 -2.34 17.17 2.25 0.04 -2.30 16 23 C -0.17 -1.57 6.18 -25.62 -0.16 -1.73 16 24 H 0.04 0.47 7.13 -51.93 -0.37 0.10 16 25 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 26 H 0.07 0.99 7.00 -51.93 -0.36 0.63 16 27 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 28 H 0.03 0.81 7.77 -51.93 -0.40 0.41 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.41 5.07 8.69 -34.47 -0.30 4.77 16 31 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 32 H 0.09 0.87 7.13 -51.93 -0.37 0.50 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.10 0.93 7.74 -51.93 -0.40 0.53 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -33.23 320.18 -7.62 -40.85 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.67 Total: 0.07 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.60 Total: -5.55 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.32 Total: -59.69 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.91 Total: -43.32 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.08 Total: -4.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 51.40 SS G_CDS: -0.65 Total: 50.75 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.23 -7.62 -40.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610785397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.811 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds