Wall clock time and date at job start Tue Mar 31 2020 03:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47250 * 2 1 4 4 C 1.35341 * 116.99825 * 180.02562 * 3 2 1 5 5 N 1.30559 * 125.43392 * 179.97438 * 4 3 2 6 6 C 1.36329 * 108.39426 * 179.97438 * 5 4 3 7 7 C 1.47268 * 126.42580 * 179.97438 * 6 5 4 8 8 O 1.21650 * 120.00276 * 174.25493 * 7 6 5 9 9 N 1.34773 * 119.99506 * 354.25495 * 7 6 5 10 10 C 1.36943 * 120.00159 * 4.85307 * 9 7 6 11 11 H 1.07990 * 120.00213 * 319.20991 * 10 9 7 12 12 C 1.38992 * 119.99431 * 139.20894 * 10 9 7 13 13 N 1.31402 * 119.99226 * 166.18907 * 12 10 9 14 14 Si 1.86793 * 120.00317 * 346.18677 * 12 10 9 15 15 H 1.48500 * 109.47475 * 91.14479 * 14 12 10 16 16 H 1.48504 * 109.46926 * 211.14528 * 14 12 10 17 17 H 1.48497 * 109.47104 * 331.13885 * 14 12 10 18 18 C 1.46501 * 119.99578 * 184.85383 * 9 7 6 19 19 C 1.50696 * 109.47119 * 84.66981 * 18 9 7 20 20 O 1.20828 * 120.00424 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00124 * 179.97438 * 19 18 9 22 22 C 1.45207 * 117.00312 * 179.97438 * 21 19 18 23 23 C 1.36036 * 107.15468 * 0.02562 * 6 5 4 24 24 O 1.34210 * 125.43724 * 359.69467 * 4 3 2 25 25 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46818 * 300.00048 * 1 2 3 27 27 H 1.09002 * 109.47693 * 59.99794 * 1 2 3 28 28 H 1.09010 * 109.46587 * 240.00319 * 2 1 3 29 29 H 1.08997 * 109.47217 * 120.00723 * 2 1 3 30 30 H 0.97001 * 120.00017 * 179.97438 * 13 12 10 31 31 H 1.09005 * 109.47016 * 204.66521 * 18 9 7 32 32 H 1.08989 * 109.47567 * 324.66118 * 18 9 7 33 33 H 1.09001 * 109.46946 * 180.02562 * 22 21 19 34 34 H 1.08999 * 109.46468 * 300.00307 * 22 21 19 35 35 H 1.08998 * 109.46754 * 59.99657 * 22 21 19 36 36 H 1.07996 * 126.46252 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5245 -0.0005 5 7 3.9592 2.6783 -0.0011 6 6 5.3037 2.4529 -0.0009 7 6 6.3620 3.4771 -0.0020 8 8 7.5281 3.1469 0.1038 9 7 6.0385 4.7800 -0.1200 10 6 4.7230 5.1600 -0.1390 11 1 4.0001 4.5758 -0.6888 12 6 4.3183 6.2976 0.5494 13 7 3.1337 6.8177 0.3198 14 14 5.4584 7.0871 1.8009 15 1 6.2894 8.1198 1.1314 16 1 4.6519 7.7205 2.8749 17 1 6.3403 6.0485 2.3914 18 6 7.0944 5.7899 -0.2281 19 6 7.5300 5.9093 -1.6657 20 8 7.0121 5.2211 -2.5132 21 8 8.4935 6.7802 -2.0049 22 6 8.8628 6.8413 -3.4079 23 6 5.4846 1.1046 -0.0008 24 8 4.2628 0.5424 0.0048 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.8510 7.6114 0.8004 31 1 6.7142 6.7514 0.1174 32 1 7.9447 5.4937 0.3859 33 1 9.6502 7.5826 -3.5444 34 1 9.2234 5.8648 -3.7314 35 1 7.9923 7.1218 -4.0009 36 1 6.4308 0.5840 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613963937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:09 Heat of formation + Delta-G solvation = -91.787535 kcal Electronic energy + Delta-G solvation = -24655.129716 eV Core-core repulsion = 20723.133919 eV Total energy + Delta-G solvation = -3931.995797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.79872 -40.02742 -38.76432 -38.38195 -35.93776 -34.93161 -34.22885 -31.93129 -31.84954 -29.34214 -28.62609 -26.67860 -25.07110 -23.71825 -22.86544 -21.86984 -20.78115 -19.54445 -18.56442 -17.40671 -17.08294 -17.00269 -16.66728 -16.03187 -15.80938 -15.43523 -15.33509 -15.17227 -14.59237 -14.01682 -13.87461 -13.25366 -12.99858 -12.90375 -12.81429 -12.72067 -12.54582 -12.27125 -11.84877 -11.74240 -11.57140 -11.15315 -11.02769 -10.55921 -10.36989 -10.33979 -10.20341 -9.88703 -9.52713 -9.41538 -8.85002 -8.15804 -7.83572 -6.34596 -3.99747 1.70391 2.36556 2.71868 2.82917 3.01184 3.12968 3.22029 3.24085 3.25891 4.06576 4.13455 4.20346 4.77478 4.79726 4.97688 5.08332 5.20005 5.36029 5.42212 5.44285 5.47180 5.55422 5.64287 5.65179 5.77506 5.82727 5.88184 5.93192 6.11758 6.46337 6.82165 7.14226 7.18533 8.02054 8.20681 8.35047 8.56632 8.94103 9.29016 9.49044 10.74646 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.005300 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.322514 B = 5281.580208 C = 6149.184829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.244 6.244 4 C 0.351 3.649 5 N -0.396 5.396 6 C 0.002 3.998 7 C 0.564 3.436 8 O -0.589 6.589 9 N -0.428 5.428 10 C -0.322 4.322 11 H 0.142 0.858 12 C 0.064 3.936 13 N -0.853 5.853 14 Si 0.857 3.143 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.257 1.257 18 C 0.102 3.898 19 C 0.451 3.549 20 O -0.489 6.489 21 O -0.368 6.368 22 C 0.036 3.964 23 C -0.040 4.040 24 O -0.238 6.238 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.275 0.725 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 -8.211 -0.991 8.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.153 6.153 4 C 0.105 3.895 5 N -0.140 5.140 6 C -0.118 4.118 7 C 0.354 3.646 8 O -0.474 6.474 9 N -0.146 5.146 10 C -0.449 4.449 11 H 0.159 0.841 12 C -0.142 4.142 13 N -0.489 5.489 14 Si 0.685 3.315 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.181 1.181 18 C -0.022 4.022 19 C 0.291 3.709 20 O -0.373 6.373 21 O -0.285 6.285 22 C -0.058 4.058 23 C -0.112 4.112 24 O -0.130 6.130 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.213 -7.754 -1.189 7.938 hybrid contribution 0.666 -0.215 0.393 0.803 sum 1.879 -7.970 -0.795 8.227 Atomic orbital electron populations 1.21784 0.91770 1.03042 1.04230 1.22902 0.96496 0.80433 1.02444 1.86402 1.09661 1.29504 1.89735 1.24060 0.83214 0.82078 1.00108 1.72120 1.03908 1.18153 1.19842 1.21516 0.90378 0.92950 1.06933 1.16753 0.85729 0.81983 0.80107 1.90678 1.18724 1.81653 1.56334 1.43295 1.06389 1.03334 1.61568 1.19866 0.81316 1.12065 1.31684 0.84065 1.25400 0.95968 0.96494 0.96380 1.69662 1.19347 1.20540 1.39357 0.87277 0.81332 0.80198 0.82729 1.19614 1.20757 1.18148 1.21510 0.94538 0.96239 0.89945 1.24612 0.76328 0.76658 0.93266 1.90629 1.52866 1.42315 1.51535 1.86518 1.53528 1.58917 1.29513 1.23150 1.00646 1.02404 0.79570 1.24679 0.85415 0.93101 1.07961 1.84281 1.16290 1.39798 1.72638 0.89980 0.91040 0.91018 0.91334 0.91332 0.91486 0.87028 0.86780 0.88669 0.92300 0.92141 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.96 16 2 C 0.05 0.61 6.38 37.16 0.24 0.84 16 3 O -0.24 -4.22 10.19 -40.95 -0.42 -4.64 16 4 C 0.35 6.90 8.98 52.22 0.47 7.37 16 5 N -0.40 -9.39 8.11 -11.72 -0.09 -9.48 16 6 C 0.00 0.05 6.71 -82.99 -0.56 -0.51 16 7 C 0.56 14.03 7.44 -12.59 -0.09 13.93 16 8 O -0.59 -14.64 16.53 5.23 0.09 -14.55 16 9 N -0.43 -10.94 1.71 -117.37 -0.20 -11.14 16 10 C -0.32 -8.92 8.52 -14.99 -0.13 -9.05 16 11 H 0.14 4.28 5.92 -52.49 -0.31 3.97 16 12 C 0.06 1.75 5.39 -17.46 -0.09 1.66 16 13 N -0.85 -24.31 13.96 55.50 0.77 -23.53 16 14 Si 0.86 19.94 24.76 -169.99 -4.21 15.73 16 15 H -0.27 -5.82 6.61 56.52 0.37 -5.44 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.26 -5.93 7.10 56.52 0.40 -5.53 16 18 C 0.10 2.33 4.50 -5.20 -0.02 2.30 16 19 C 0.45 10.03 7.99 36.00 0.29 10.31 16 20 O -0.49 -12.16 16.06 -18.75 -0.30 -12.46 16 21 O -0.37 -6.84 10.57 -39.25 -0.41 -7.25 16 22 C 0.04 0.52 10.56 101.05 1.07 1.59 16 23 C -0.04 -0.71 11.94 29.94 0.36 -0.36 16 24 O -0.24 -4.10 10.20 -17.81 -0.18 -4.28 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.11 2.51 3.24 -51.93 -0.17 2.34 16 32 H 0.11 2.37 7.52 -51.94 -0.39 1.97 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 36 H 0.23 3.20 8.06 -52.49 -0.42 2.78 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -34.16 319.74 -2.07 -36.23 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.84 Total: 3.42 kcal Atomic # 6 Polarization: 25.23 SS G_CDS: 1.90 Total: 27.14 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.48 Total: -44.15 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.23 Total: -43.18 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.21 Total: 15.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.16 -2.07 -36.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613963937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.554 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds