Wall clock time and date at job start Tue Mar 31 2020 03:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47250 * 2 1 4 4 C 1.35341 * 116.99825 * 180.02562 * 3 2 1 5 5 N 1.30559 * 125.43392 * 179.97438 * 4 3 2 6 6 C 1.36329 * 108.39426 * 179.97438 * 5 4 3 7 7 C 1.47268 * 126.42580 * 179.97438 * 6 5 4 8 8 O 1.21650 * 120.00276 * 174.25493 * 7 6 5 9 9 N 1.34773 * 119.99506 * 354.25495 * 7 6 5 10 10 C 1.36943 * 120.00159 * 4.85307 * 9 7 6 11 11 H 1.07990 * 120.00213 * 319.20991 * 10 9 7 12 12 C 1.38992 * 119.99431 * 139.20894 * 10 9 7 13 13 N 1.31402 * 119.99226 * 166.18907 * 12 10 9 14 14 Si 1.86793 * 120.00317 * 346.18677 * 12 10 9 15 15 H 1.48500 * 109.47475 * 91.14479 * 14 12 10 16 16 H 1.48504 * 109.46926 * 211.14528 * 14 12 10 17 17 H 1.48497 * 109.47104 * 331.13885 * 14 12 10 18 18 C 1.46501 * 119.99578 * 184.85383 * 9 7 6 19 19 C 1.50696 * 109.47119 * 84.66981 * 18 9 7 20 20 O 1.20828 * 120.00424 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00124 * 179.97438 * 19 18 9 22 22 C 1.45207 * 117.00312 * 179.97438 * 21 19 18 23 23 C 1.36036 * 107.15468 * 0.02562 * 6 5 4 24 24 O 1.34210 * 125.43724 * 359.69467 * 4 3 2 25 25 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46818 * 300.00048 * 1 2 3 27 27 H 1.09002 * 109.47693 * 59.99794 * 1 2 3 28 28 H 1.09010 * 109.46587 * 240.00319 * 2 1 3 29 29 H 1.08997 * 109.47217 * 120.00723 * 2 1 3 30 30 H 0.97001 * 120.00017 * 179.97438 * 13 12 10 31 31 H 1.09005 * 109.47016 * 204.66521 * 18 9 7 32 32 H 1.08989 * 109.47567 * 324.66118 * 18 9 7 33 33 H 1.09001 * 109.46946 * 180.02562 * 22 21 19 34 34 H 1.08999 * 109.46468 * 300.00307 * 22 21 19 35 35 H 1.08998 * 109.46754 * 59.99657 * 22 21 19 36 36 H 1.07996 * 126.46252 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5245 -0.0005 5 7 3.9592 2.6783 -0.0011 6 6 5.3037 2.4529 -0.0009 7 6 6.3620 3.4771 -0.0020 8 8 7.5281 3.1469 0.1038 9 7 6.0385 4.7800 -0.1200 10 6 4.7230 5.1600 -0.1390 11 1 4.0001 4.5758 -0.6888 12 6 4.3183 6.2976 0.5494 13 7 3.1337 6.8177 0.3198 14 14 5.4584 7.0871 1.8009 15 1 6.2894 8.1198 1.1314 16 1 4.6519 7.7205 2.8749 17 1 6.3403 6.0485 2.3914 18 6 7.0944 5.7899 -0.2281 19 6 7.5300 5.9093 -1.6657 20 8 7.0121 5.2211 -2.5132 21 8 8.4935 6.7802 -2.0049 22 6 8.8628 6.8413 -3.4079 23 6 5.4846 1.1046 -0.0008 24 8 4.2628 0.5424 0.0048 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.8510 7.6114 0.8004 31 1 6.7142 6.7514 0.1174 32 1 7.9447 5.4937 0.3859 33 1 9.6502 7.5826 -3.5444 34 1 9.2234 5.8648 -3.7314 35 1 7.9923 7.1218 -4.0009 36 1 6.4308 0.5840 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613963937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:09 Heat of formation + Delta-G solvation = -118.456497 kcal Electronic energy + Delta-G solvation = -24656.286169 eV Core-core repulsion = 20723.133919 eV Total energy + Delta-G solvation = -3933.152250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.32659 -41.73787 -40.40485 -39.79637 -37.60833 -36.81980 -35.81716 -33.95537 -32.81438 -30.96108 -30.16221 -28.05027 -27.04910 -24.96702 -24.29157 -23.33907 -22.34424 -21.22386 -20.28310 -19.09910 -18.68813 -18.49517 -18.38134 -17.54427 -17.31903 -17.09624 -16.98629 -16.48741 -16.09149 -15.70325 -15.61277 -14.83259 -14.61403 -14.39362 -14.31519 -14.06605 -13.85426 -13.55729 -13.50035 -13.00332 -12.92266 -12.62665 -12.41032 -12.30716 -12.00508 -11.82559 -11.72497 -11.66996 -11.34944 -11.19416 -10.76743 -9.91687 -9.55406 -8.38123 -6.09145 0.15353 0.97719 1.06559 1.10563 1.19289 1.36727 1.43016 1.57803 1.89888 2.18972 2.35856 2.41079 3.04258 3.63659 3.85793 3.88108 3.89541 3.95091 4.05833 4.12573 4.22849 4.30860 4.31858 4.32670 4.57253 4.65543 4.79156 4.87816 4.92344 5.19471 5.21140 5.29475 5.80138 6.06077 6.44733 6.64275 6.71411 6.97345 7.27292 7.52153 8.74866 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.005300 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.322514 B = 5281.580208 C = 6149.184829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 O -0.263 6.263 4 C 0.359 3.641 5 N -0.451 5.451 6 C -0.055 4.055 7 C 0.562 3.438 8 O -0.595 6.595 9 N -0.443 5.443 10 C -0.323 4.323 11 H 0.105 0.895 12 C 0.018 3.982 13 N -0.901 5.901 14 Si 0.914 3.086 15 H -0.239 1.239 16 H -0.280 1.280 17 H -0.254 1.254 18 C 0.095 3.905 19 C 0.455 3.545 20 O -0.525 6.525 21 O -0.361 6.361 22 C 0.028 3.972 23 C 0.008 3.992 24 O -0.217 6.217 25 H 0.117 0.883 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.278 0.722 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 -9.232 -0.557 9.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.172 6.172 4 C 0.113 3.887 5 N -0.196 5.196 6 C -0.173 4.173 7 C 0.353 3.647 8 O -0.481 6.481 9 N -0.162 5.162 10 C -0.451 4.451 11 H 0.123 0.877 12 C -0.185 4.185 13 N -0.538 5.538 14 Si 0.737 3.263 15 H -0.165 1.165 16 H -0.206 1.206 17 H -0.178 1.178 18 C -0.029 4.029 19 C 0.297 3.703 20 O -0.413 6.413 21 O -0.277 6.277 22 C -0.065 4.065 23 C -0.064 4.064 24 O -0.108 6.108 25 H 0.136 0.864 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 2.831 -8.768 -0.765 9.246 hybrid contribution 0.167 -0.086 0.150 0.241 sum 2.998 -8.854 -0.615 9.368 Atomic orbital electron populations 1.21854 0.89799 1.05102 1.03612 1.23420 0.98007 0.78068 1.03926 1.86440 1.08179 1.33160 1.89440 1.23900 0.84225 0.81744 0.98879 1.71918 1.05012 1.20733 1.21937 1.21498 0.90028 0.94385 1.11388 1.17120 0.86299 0.82275 0.78967 1.90640 1.18932 1.81857 1.56637 1.43298 1.06100 1.04154 1.62620 1.19505 0.82119 1.11820 1.31680 0.87745 1.26040 0.97538 0.97001 0.97902 1.69772 1.21461 1.21654 1.40951 0.86367 0.79748 0.79982 0.80163 1.16452 1.20603 1.17823 1.21616 0.94517 0.95818 0.90952 1.24452 0.76508 0.76593 0.92785 1.90613 1.54323 1.43955 1.52373 1.86485 1.51860 1.57249 1.32137 1.23587 1.01837 1.04118 0.76997 1.25430 0.86578 0.91612 1.02819 1.84334 1.15817 1.38679 1.71974 0.86448 0.91612 0.91708 0.89905 0.89719 0.91185 0.86779 0.84741 0.83959 0.92103 0.92532 0.71414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.04 0.85 6.38 71.98 0.46 1.31 16 3 O -0.26 -9.12 10.19 -64.09 -0.65 -9.77 16 4 C 0.36 14.17 8.98 130.43 1.17 15.34 16 5 N -0.45 -22.07 8.11 -419.39 -3.40 -25.47 16 6 C -0.05 -2.50 6.71 40.31 0.27 -2.23 16 7 C 0.56 28.13 7.44 86.62 0.64 28.77 16 8 O -0.59 -29.08 16.53 -4.19 -0.07 -29.15 16 9 N -0.44 -22.97 1.71 -643.50 -1.10 -24.07 16 10 C -0.32 -18.60 8.52 84.08 0.72 -17.89 16 11 H 0.11 6.74 5.92 -2.92 -0.02 6.73 16 12 C 0.02 1.00 5.39 84.94 0.46 1.45 16 13 N -0.90 -53.24 13.96 21.67 0.30 -52.94 16 14 Si 0.91 41.08 24.76 68.60 1.70 42.78 16 15 H -0.24 -9.53 6.61 99.48 0.66 -8.87 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.25 -11.21 7.10 99.48 0.71 -10.50 16 18 C 0.10 4.26 4.50 85.63 0.39 4.65 16 19 C 0.45 19.99 7.99 71.23 0.57 20.56 16 20 O -0.52 -26.42 16.06 21.96 0.35 -26.07 16 21 O -0.36 -12.76 10.57 -51.40 -0.54 -13.30 16 22 C 0.03 0.73 10.56 113.37 1.20 1.92 16 23 C 0.01 0.28 11.94 67.31 0.80 1.08 16 24 O -0.22 -7.08 10.20 18.70 0.19 -6.89 16 25 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.12 4.99 3.24 -2.38 -0.01 4.98 16 32 H 0.13 5.37 7.52 -2.39 -0.02 5.36 16 33 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 35 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 36 H 0.27 6.57 8.06 -2.91 -0.02 6.54 16 Total: -1.00 -78.04 319.74 5.27 -72.77 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 1.08 Total: 18.78 kcal Atomic # 6 Polarization: 45.93 SS G_CDS: 7.41 Total: 53.34 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -4.20 Total: -102.48 kcal Atomic # 8 Polarization: -84.46 SS G_CDS: -0.72 Total: -85.18 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.70 Total: 42.78 kcal Total: -78.04 5.27 -72.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613963937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.691 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds