Wall clock time and date at job start Tue Mar 31 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00508 * 2 1 4 4 H 1.48496 * 109.47453 * 270.00191 * 3 2 1 5 5 H 1.48500 * 109.47160 * 30.00055 * 3 2 1 6 6 H 1.48505 * 109.47511 * 149.99825 * 3 2 1 7 7 C 1.37876 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00664 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47227 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46591 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47256 * 55.00988 * 11 10 9 13 13 N 1.46896 * 109.47386 * 295.00175 * 11 10 9 14 14 C 1.50703 * 109.46700 * 175.00202 * 11 10 9 15 15 O 1.21284 * 120.00087 * 99.99781 * 14 11 10 16 16 N 1.34777 * 119.99991 * 280.00189 * 14 11 10 17 17 C 1.46507 * 119.99713 * 179.97438 * 16 14 11 18 18 C 1.53002 * 109.46688 * 179.97438 * 17 16 14 19 19 H 1.09002 * 109.47070 * 60.00104 * 18 17 16 20 20 O 1.42898 * 109.47113 * 299.99974 * 18 17 16 21 21 C 1.50703 * 109.46966 * 180.02562 * 18 17 16 22 22 C 1.38420 * 122.54022 * 264.73762 * 21 18 17 23 23 C 1.33391 * 114.92230 * 179.75536 * 22 21 18 24 24 S 1.75883 * 109.59117 * 0.48384 * 23 22 21 25 25 C 1.33388 * 122.53788 * 85.02486 * 21 18 17 26 26 H 0.97005 * 119.99433 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46577 * 59.99555 * 9 7 2 28 28 H 1.08999 * 109.47025 * 300.00006 * 9 7 2 29 29 H 1.08996 * 109.47001 * 60.00606 * 10 9 7 30 30 H 1.08996 * 109.47063 * 299.99875 * 10 9 7 31 31 H 1.00903 * 111.00116 * 176.05108 * 13 11 10 32 32 H 1.00902 * 110.99912 * 299.99728 * 13 11 10 33 33 H 0.96997 * 120.00408 * 0.02562 * 16 14 11 34 34 H 1.09002 * 109.46822 * 60.00309 * 17 16 14 35 35 H 1.08996 * 109.46955 * 299.99784 * 17 16 14 36 36 H 0.96698 * 113.99898 * 299.99778 * 20 18 17 37 37 H 1.08009 * 122.53770 * 0.02562 * 22 21 18 38 38 H 1.07993 * 125.20415 * 180.20504 * 23 22 21 39 39 H 1.07994 * 125.20700 * 359.97438 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4799 -4.9871 -0.0001 12 1 0.7882 -5.0068 -0.8422 13 7 0.7277 -5.1188 1.2547 14 6 2.4545 -6.1299 -0.1239 15 8 2.7860 -6.7537 0.8620 16 7 2.9579 -6.4586 -1.3302 17 6 3.9058 -7.5693 -1.4503 18 6 4.3185 -7.7312 -2.9147 19 1 4.7896 -6.8121 -3.2632 20 8 3.1618 -8.0041 -3.7082 21 6 5.2930 -8.8740 -3.0385 22 6 6.6645 -8.6864 -3.0375 23 6 7.3847 -9.8035 -3.1504 24 16 6.3084 -11.1885 -3.2808 25 6 4.8993 -10.1424 -3.1630 26 1 -0.4849 0.8401 0.0004 27 1 0.6245 -2.5570 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 2.8717 -3.6045 0.8905 30 1 2.8717 -3.6045 -0.8894 31 1 0.1633 -5.9552 1.2519 32 1 1.3473 -5.1035 2.0510 33 1 2.6932 -5.9595 -2.1186 34 1 3.4345 -8.4884 -1.1023 35 1 4.7878 -7.3612 -0.8448 36 1 2.6914 -8.8097 -3.4536 37 1 7.1172 -7.7099 -2.9475 38 1 8.4635 -9.8499 -3.1645 39 1 3.8725 -10.4760 -3.1873 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691604167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:16 Heat of formation + Delta-G solvation = -66.995577 kcal Electronic energy + Delta-G solvation = -21151.108060 eV Core-core repulsion = 17798.773289 eV Total energy + Delta-G solvation = -3352.334771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09725 -39.19324 -36.65282 -35.22107 -34.36829 -32.78197 -30.61539 -30.08172 -28.93342 -26.47192 -24.91939 -23.32419 -22.25818 -20.71790 -19.89911 -19.24135 -18.50237 -17.47491 -16.94537 -16.32171 -16.01343 -15.57905 -15.37611 -15.00190 -14.45606 -14.25895 -14.06297 -13.85884 -13.40523 -13.32147 -13.19501 -12.79321 -12.47603 -12.29720 -11.99305 -11.83101 -11.51975 -11.23368 -10.88588 -10.69506 -10.61902 -10.54416 -10.12819 -9.78896 -9.36438 -9.25470 -9.10206 -8.98132 -8.83358 -8.34095 -8.19435 -5.92667 -3.94745 0.56309 1.22550 1.54776 2.19535 2.77397 3.23981 3.35417 3.41908 3.45258 3.99514 4.33887 4.50511 4.52351 4.57245 4.75782 4.90418 4.94685 5.12436 5.15091 5.39643 5.42906 5.51880 5.56306 5.64599 5.85102 5.89590 6.01033 6.37818 6.45989 6.66401 7.10087 7.14444 7.38351 7.60484 7.77506 7.80865 7.97688 8.14460 8.31339 8.49661 9.13270 9.68310 11.18273 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.002598 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.035355 B =10775.840946 C =11397.264743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.807 5.807 14 C 0.483 3.517 15 O -0.556 6.556 16 N -0.726 5.726 17 C 0.094 3.906 18 C 0.157 3.843 19 H 0.118 0.882 20 O -0.547 6.547 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.210 4.210 24 S 0.104 5.896 25 C -0.203 4.203 26 H 0.259 0.741 27 H 0.013 0.987 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.333 0.667 32 H 0.347 0.653 33 H 0.408 0.592 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.375 0.625 37 H 0.145 0.855 38 H 0.167 0.833 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.063 -23.146 -8.409 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.269 3.731 15 O -0.434 6.434 16 N -0.379 5.379 17 C -0.032 4.032 18 C 0.095 3.905 19 H 0.136 0.864 20 O -0.353 6.353 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.345 4.345 24 S 0.368 5.632 25 C -0.339 4.339 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.161 0.839 33 H 0.243 0.757 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.223 0.777 37 H 0.162 0.838 38 H 0.184 0.816 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.204 -23.818 -8.343 27.612 hybrid contribution 0.727 1.147 0.156 1.367 sum 11.931 -22.671 -8.187 26.895 Atomic orbital electron populations 1.69979 1.05947 1.26397 1.50862 1.24993 0.94812 0.99057 0.95506 0.86647 0.79876 0.83781 0.77978 1.20781 1.21274 1.19997 1.21280 0.92888 0.91333 1.50542 0.93000 1.19021 0.93570 0.89813 0.98219 1.21655 0.98852 0.92181 1.00646 1.21841 0.93538 0.93223 0.95109 0.88338 1.59003 1.26902 1.44244 1.03290 1.22799 0.82179 0.85732 0.82397 1.90646 1.61205 1.54373 1.37189 1.46064 1.46473 1.34678 1.10709 1.21949 0.94184 0.91025 0.96006 1.20760 0.84282 0.95633 0.89833 0.86389 1.86658 1.40796 1.48321 1.59493 1.19459 0.95163 0.95036 1.04750 1.20063 0.92402 0.99952 1.03168 1.25647 1.03573 0.95396 1.09907 1.84330 0.96522 1.10607 1.71714 1.25358 1.02728 0.96059 1.09781 0.93106 0.96843 0.94669 0.92882 0.92810 0.85496 0.83856 0.75662 0.91433 0.90552 0.77741 0.83751 0.81595 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 10 C -0.09 -1.91 4.78 -26.73 -0.13 -2.04 16 11 C 0.08 1.32 3.15 -68.87 -0.22 1.10 16 12 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 13 N -0.81 -13.65 8.44 -5.66 -0.05 -13.69 16 14 C 0.48 7.51 7.07 -10.98 -0.08 7.43 16 15 O -0.56 -10.19 16.25 5.55 0.09 -10.10 16 16 N -0.73 -8.80 5.45 -60.29 -0.33 -9.13 16 17 C 0.09 0.96 5.32 -4.04 -0.02 0.94 16 18 C 0.16 1.31 3.39 -27.88 -0.09 1.22 16 19 H 0.12 0.98 8.11 -51.93 -0.42 0.55 16 20 O -0.55 -4.67 12.91 -35.23 -0.45 -5.12 16 21 C -0.13 -1.06 4.91 -106.25 -0.52 -1.58 16 22 C -0.13 -0.98 9.96 -41.21 -0.41 -1.39 16 23 C -0.21 -1.48 11.23 29.04 0.33 -1.15 16 24 S 0.10 0.72 23.34 -107.50 -2.51 -1.79 16 25 C -0.20 -1.48 10.43 29.04 0.30 -1.18 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.33 4.88 9.06 -39.29 -0.36 4.53 16 32 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 33 H 0.41 4.47 8.35 -40.82 -0.34 4.13 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.37 2.10 7.78 45.56 0.35 2.46 16 37 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.16 0.85 7.14 -52.49 -0.37 0.47 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -33.86 347.99 -8.48 -42.34 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -4.80 Total: 11.27 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.39 Total: -9.52 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.36 Total: -49.08 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.36 Total: -15.23 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.86 -8.48 -42.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.661 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds