Wall clock time and date at job start Tue Mar 31 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00508 * 2 1 4 4 H 1.48496 * 109.47453 * 270.00191 * 3 2 1 5 5 H 1.48500 * 109.47160 * 30.00055 * 3 2 1 6 6 H 1.48505 * 109.47511 * 149.99825 * 3 2 1 7 7 C 1.37876 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00664 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47227 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46591 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47256 * 55.00988 * 11 10 9 13 13 N 1.46896 * 109.47386 * 295.00175 * 11 10 9 14 14 C 1.50703 * 109.46700 * 175.00202 * 11 10 9 15 15 O 1.21284 * 120.00087 * 99.99781 * 14 11 10 16 16 N 1.34777 * 119.99991 * 280.00189 * 14 11 10 17 17 C 1.46507 * 119.99713 * 179.97438 * 16 14 11 18 18 C 1.53002 * 109.46688 * 179.97438 * 17 16 14 19 19 H 1.09002 * 109.47070 * 60.00104 * 18 17 16 20 20 O 1.42898 * 109.47113 * 299.99974 * 18 17 16 21 21 C 1.50703 * 109.46966 * 180.02562 * 18 17 16 22 22 C 1.38420 * 122.54022 * 264.73762 * 21 18 17 23 23 C 1.33391 * 114.92230 * 179.75536 * 22 21 18 24 24 S 1.75883 * 109.59117 * 0.48384 * 23 22 21 25 25 C 1.33388 * 122.53788 * 85.02486 * 21 18 17 26 26 H 0.97005 * 119.99433 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46577 * 59.99555 * 9 7 2 28 28 H 1.08999 * 109.47025 * 300.00006 * 9 7 2 29 29 H 1.08996 * 109.47001 * 60.00606 * 10 9 7 30 30 H 1.08996 * 109.47063 * 299.99875 * 10 9 7 31 31 H 1.00903 * 111.00116 * 176.05108 * 13 11 10 32 32 H 1.00902 * 110.99912 * 299.99728 * 13 11 10 33 33 H 0.96997 * 120.00408 * 0.02562 * 16 14 11 34 34 H 1.09002 * 109.46822 * 60.00309 * 17 16 14 35 35 H 1.08996 * 109.46955 * 299.99784 * 17 16 14 36 36 H 0.96698 * 113.99898 * 299.99778 * 20 18 17 37 37 H 1.08009 * 122.53770 * 0.02562 * 22 21 18 38 38 H 1.07993 * 125.20415 * 180.20504 * 23 22 21 39 39 H 1.07994 * 125.20700 * 359.97438 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4799 -4.9871 -0.0001 12 1 0.7882 -5.0068 -0.8422 13 7 0.7277 -5.1188 1.2547 14 6 2.4545 -6.1299 -0.1239 15 8 2.7860 -6.7537 0.8620 16 7 2.9579 -6.4586 -1.3302 17 6 3.9058 -7.5693 -1.4503 18 6 4.3185 -7.7312 -2.9147 19 1 4.7896 -6.8121 -3.2632 20 8 3.1618 -8.0041 -3.7082 21 6 5.2930 -8.8740 -3.0385 22 6 6.6645 -8.6864 -3.0375 23 6 7.3847 -9.8035 -3.1504 24 16 6.3084 -11.1885 -3.2808 25 6 4.8993 -10.1424 -3.1630 26 1 -0.4849 0.8401 0.0004 27 1 0.6245 -2.5570 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 2.8717 -3.6045 0.8905 30 1 2.8717 -3.6045 -0.8894 31 1 0.1633 -5.9552 1.2519 32 1 1.3473 -5.1035 2.0510 33 1 2.6932 -5.9595 -2.1186 34 1 3.4345 -8.4884 -1.1023 35 1 4.7878 -7.3612 -0.8448 36 1 2.6914 -8.8097 -3.4536 37 1 7.1172 -7.7099 -2.9475 38 1 8.4635 -9.8499 -3.1645 39 1 3.8725 -10.4760 -3.1873 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691604167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:16 Heat of formation + Delta-G solvation = -94.047169 kcal Electronic energy + Delta-G solvation = -21152.281105 eV Core-core repulsion = 17798.773289 eV Total energy + Delta-G solvation = -3353.507816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16286 -40.01104 -37.33536 -36.76662 -35.40241 -34.79592 -31.91728 -31.28826 -29.70972 -28.02737 -26.09691 -24.67710 -23.01365 -22.31955 -21.22589 -19.90028 -19.06355 -18.75617 -18.10221 -17.78810 -17.24307 -16.74532 -16.50280 -16.35445 -15.77137 -15.39765 -15.13838 -14.91117 -14.50649 -14.26775 -13.90262 -13.89548 -13.74606 -13.53500 -13.35417 -13.15264 -12.78454 -12.51236 -12.45186 -12.24979 -11.81749 -11.75832 -11.64588 -11.31064 -11.22180 -10.97846 -10.47702 -10.18279 -9.79627 -9.62028 -9.36252 -8.12628 -6.22754 0.02325 0.70337 1.01454 1.42550 1.44016 1.50877 1.54960 1.60622 2.20242 2.45814 3.20465 3.37779 3.58673 3.67610 3.79445 3.96185 4.02951 4.10367 4.15533 4.34053 4.41930 4.57930 4.63415 4.77773 4.80220 4.96265 5.07113 5.27079 5.33436 5.37677 5.44634 5.58763 5.86330 6.00317 6.11040 6.31869 6.44350 6.54533 6.64396 6.96151 7.13853 7.45299 8.98649 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.002598 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.035355 B =10775.840946 C =11397.264743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.082 4.082 11 C 0.085 3.915 12 H 0.110 0.890 13 N -0.819 5.819 14 C 0.489 3.511 15 O -0.584 6.584 16 N -0.710 5.710 17 C 0.097 3.903 18 C 0.171 3.829 19 H 0.120 0.880 20 O -0.557 6.557 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.215 4.215 24 S 0.109 5.891 25 C -0.209 4.209 26 H 0.262 0.738 27 H -0.006 1.006 28 H 0.005 0.995 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.346 0.654 32 H 0.345 0.655 33 H 0.416 0.584 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.387 0.613 37 H 0.153 0.847 38 H 0.184 0.816 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.289 -23.633 -9.347 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.120 4.120 11 C -0.031 4.031 12 H 0.128 0.872 13 N -0.348 5.348 14 C 0.275 3.725 15 O -0.465 6.465 16 N -0.363 5.363 17 C -0.028 4.028 18 C 0.109 3.891 19 H 0.137 0.863 20 O -0.364 6.364 21 C -0.157 4.157 22 C -0.172 4.172 23 C -0.350 4.350 24 S 0.373 5.627 25 C -0.344 4.344 26 H 0.070 0.930 27 H 0.012 0.988 28 H 0.024 0.976 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.253 0.747 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.237 0.763 37 H 0.170 0.830 38 H 0.201 0.799 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 12.439 -24.333 -9.320 28.873 hybrid contribution 0.331 1.228 0.421 1.339 sum 12.770 -23.105 -8.899 27.859 Atomic orbital electron populations 1.70110 1.07643 1.27486 1.51812 1.25910 0.95709 1.03060 0.95035 0.85529 0.78613 0.78914 0.78459 1.19647 1.21002 1.19086 1.21741 0.93374 0.92735 1.50256 0.92579 1.18834 0.93905 0.91361 0.95751 1.21388 0.97723 0.92089 1.00808 1.21635 0.93769 0.92118 0.95531 0.87201 1.58976 1.27235 1.45299 1.03289 1.22347 0.81932 0.85285 0.82966 1.90640 1.62138 1.55346 1.38332 1.45943 1.45726 1.34732 1.09859 1.22036 0.93198 0.90081 0.97483 1.20563 0.84334 0.96020 0.88212 0.86264 1.86636 1.40944 1.49312 1.59539 1.19479 0.95265 0.95156 1.05801 1.20267 0.92541 1.00696 1.03705 1.25938 1.04607 0.95170 1.09292 1.84324 0.96440 1.10547 1.71367 1.25663 1.03832 0.95949 1.08997 0.92952 0.98757 0.97630 0.93921 0.91356 0.84033 0.84164 0.74718 0.91310 0.91455 0.76280 0.82966 0.79861 0.80085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.04 2.01 4.86 29.85 0.15 2.16 16 10 C -0.08 -3.27 4.78 30.59 0.15 -3.12 16 11 C 0.09 2.80 3.15 44.17 0.14 2.94 16 12 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 13 N -0.82 -27.67 8.44 -171.81 -1.45 -29.12 16 14 C 0.49 14.67 7.07 87.66 0.62 15.29 16 15 O -0.58 -20.94 16.25 -3.04 -0.05 -20.99 16 16 N -0.71 -16.09 5.45 -463.04 -2.52 -18.61 16 17 C 0.10 1.85 5.32 86.38 0.46 2.31 16 18 C 0.17 2.57 3.39 29.85 0.10 2.67 16 19 H 0.12 1.77 8.11 -2.39 -0.02 1.75 16 20 O -0.56 -8.37 12.91 -148.98 -1.92 -10.29 16 21 C -0.14 -2.10 4.91 -20.92 -0.10 -2.20 16 22 C -0.14 -2.02 9.96 21.22 0.21 -1.80 16 23 C -0.21 -2.69 11.23 66.72 0.75 -1.94 16 24 S 0.11 1.35 23.34 -56.49 -1.32 0.03 16 25 C -0.21 -2.67 10.43 66.72 0.70 -1.98 16 26 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 27 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 31 H 0.35 9.99 9.06 -89.69 -0.81 9.18 16 32 H 0.34 11.94 8.58 -89.69 -0.77 11.17 16 33 H 0.42 8.29 8.35 -92.71 -0.77 7.51 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.39 3.49 7.78 -74.06 -0.58 2.92 16 37 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.18 1.49 7.14 -2.91 -0.02 1.47 16 Total: -1.00 -71.89 347.99 -2.92 -74.81 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -1.83 Total: 30.07 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 3.86 Total: -15.80 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -3.69 Total: -104.35 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -1.97 Total: -31.28 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.32 Total: 0.03 kcal Total: -71.89 -2.92 -74.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691604167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.236 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds