Wall clock time and date at job start Tue Mar 31 2020 03:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35064 * 125.56312 * 2 1 4 4 O 1.21296 * 127.28301 * 359.71483 * 3 2 1 5 5 C 1.49974 * 105.42928 * 179.73684 * 3 2 1 6 6 O 1.21302 * 127.28159 * 179.97438 * 5 3 2 7 7 N 1.35059 * 105.43708 * 0.02562 * 5 3 2 8 8 C 1.46496 * 125.57124 * 179.97438 * 7 5 3 9 9 C 1.50698 * 109.47177 * 90.02665 * 8 7 5 10 10 O 1.20827 * 119.99988 * 359.97438 * 9 8 7 11 11 O 1.34227 * 120.00275 * 180.02562 * 9 8 7 12 12 C 1.45203 * 117.00116 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47028 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.46933 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46925 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00324 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99731 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46922 * 89.99609 * 19 17 15 21 21 H 1.48495 * 109.47063 * 209.99507 * 19 17 15 22 22 H 1.48501 * 109.47192 * 329.99907 * 19 17 15 23 23 C 1.34272 * 125.56631 * 179.69772 * 2 1 3 24 24 O 1.21481 * 124.29999 * 0.23883 * 23 2 1 25 25 H 1.08999 * 109.47253 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47083 * 120.02480 * 1 2 3 27 27 H 1.08997 * 109.46837 * 240.02032 * 1 2 3 28 28 H 1.09004 * 109.47000 * 210.02334 * 8 7 5 29 29 H 1.08998 * 109.47015 * 330.02143 * 8 7 5 30 30 H 1.08998 * 109.46663 * 299.99441 * 12 11 9 31 31 H 1.08993 * 109.46943 * 59.99930 * 12 11 9 32 32 H 1.09003 * 109.46827 * 299.99752 * 13 12 11 33 33 H 1.08997 * 109.47197 * 59.99676 * 13 12 11 34 34 H 1.09003 * 109.47207 * 299.99575 * 14 13 12 35 35 H 1.08997 * 109.47397 * 59.99856 * 14 13 12 36 36 H 0.97002 * 119.99622 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.0987 0.0000 4 8 1.8928 2.2577 -0.0048 5 6 3.6587 0.5825 0.0066 6 8 4.6807 1.2358 0.0083 7 7 3.5481 -0.7636 0.0092 8 6 4.6659 -1.7104 0.0152 9 6 5.0438 -2.0325 1.4380 10 8 4.4416 -1.5229 2.3532 11 8 6.0502 -2.8846 1.6887 12 6 6.3587 -3.1486 3.0828 13 6 7.5243 -4.1360 3.1691 14 6 7.8498 -4.4136 4.6380 15 6 8.9974 -5.3866 4.7230 16 1 9.4492 -5.7691 3.8196 17 6 9.4700 -5.7894 5.9541 18 7 8.9195 -5.3240 7.0541 19 14 10.8921 -6.9960 6.0594 20 1 12.1747 -6.2481 6.0888 21 1 10.7631 -7.8063 7.2971 22 1 10.8691 -7.8928 4.8760 23 6 2.2460 -1.0922 0.0058 24 8 1.8279 -2.2328 0.0076 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5142 -0.8898 27 1 -0.3633 -0.5135 0.8902 28 1 4.3697 -2.6254 -0.4980 29 1 5.5202 -1.2672 -0.4963 30 1 6.6341 -2.2167 3.5766 31 1 5.4843 -3.5755 3.5738 32 1 7.2484 -5.0678 2.6753 33 1 8.3989 -3.7095 2.6778 34 1 8.1258 -3.4817 5.1314 35 1 6.9753 -4.8399 5.1296 36 1 9.2523 -5.6071 7.9201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733564477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:38 Heat of formation + Delta-G solvation = -143.505598 kcal Electronic energy + Delta-G solvation = -23354.855319 eV Core-core repulsion = 19420.616858 eV Total energy + Delta-G solvation = -3934.238460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.88438 -40.52050 -39.74453 -39.27309 -37.01984 -36.77422 -35.69355 -34.07064 -31.88036 -31.04062 -28.02746 -26.83553 -26.14217 -23.63874 -22.67747 -22.36367 -21.03547 -20.39907 -18.65676 -18.38859 -17.63756 -17.54694 -17.12451 -16.69030 -16.54782 -16.23020 -15.82266 -15.69570 -15.17476 -14.83465 -14.49437 -14.44590 -13.71966 -13.33608 -13.28862 -13.20075 -13.06933 -12.25408 -12.16189 -11.96180 -11.57199 -11.26343 -11.01274 -10.74696 -10.71650 -10.67262 -10.59153 -10.51707 -10.35357 -9.79765 -9.55385 -9.20393 -8.41783 -6.06461 -4.09777 -0.21301 1.09030 1.46760 1.94624 1.99624 2.01850 2.69611 3.29359 3.32503 3.35686 3.38920 3.98058 4.35819 4.42772 4.44233 4.61927 4.67407 4.72103 4.74820 5.01367 5.09574 5.29645 5.48085 5.49823 5.91082 6.02074 6.07869 6.29883 6.46763 6.61968 6.70827 6.91389 6.96614 7.55780 7.60435 7.66289 7.91408 8.31882 8.96429 9.54796 11.04988 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.036164 B = 0.002433 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.060777 B =11505.032964 C =11671.951071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.573 5.573 3 C 0.515 3.485 4 O -0.409 6.409 5 C 0.513 3.487 6 O -0.400 6.400 7 N -0.564 5.564 8 C 0.130 3.870 9 C 0.444 3.556 10 O -0.503 6.503 11 O -0.349 6.349 12 C 0.069 3.931 13 C -0.109 4.109 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.716 3.284 24 O -0.479 6.479 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.548 10.691 -18.710 27.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.323 5.323 3 C 0.295 3.705 4 O -0.273 6.273 5 C 0.293 3.707 6 O -0.263 6.263 7 N -0.314 5.314 8 C 0.008 3.992 9 C 0.284 3.716 10 O -0.391 6.391 11 O -0.265 6.265 12 C -0.004 4.004 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.419 3.581 24 O -0.346 6.346 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.569 11.178 -18.200 27.032 hybrid contribution 0.703 -0.685 0.495 1.099 sum -15.867 10.493 -17.704 25.987 Atomic orbital electron populations 1.22024 0.72859 1.05412 1.04781 1.46540 1.10107 1.06959 1.68689 1.20747 0.87472 0.85626 0.76625 1.90862 1.79254 1.16548 1.40679 1.20889 0.91096 0.82162 0.76561 1.90886 1.33381 1.62393 1.39657 1.46238 1.07621 1.08587 1.68951 1.21140 0.89176 0.95407 0.93478 1.23519 0.78732 0.77300 0.92017 1.90708 1.51782 1.49902 1.46673 1.86470 1.48087 1.57908 1.34013 1.23630 1.00117 1.00743 0.75876 1.21790 0.94288 0.96509 1.02059 1.19056 0.97053 0.97230 0.87993 1.21158 1.16372 1.26139 0.92377 0.92375 1.25036 0.97090 0.96562 0.95790 1.69963 1.41596 1.44219 0.97563 0.86535 0.82494 0.81076 0.77558 1.20590 1.21183 1.19787 1.15779 0.80525 0.85087 0.76734 1.91062 1.75869 1.18285 1.49419 0.88048 0.89438 0.89420 0.83423 0.83544 0.91235 0.91227 0.91949 0.91965 0.96211 0.96204 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 10.95 59.85 0.66 1.03 16 2 N -0.57 -4.41 3.06 -128.66 -0.39 -4.80 16 3 C 0.51 4.73 8.31 -11.21 -0.09 4.63 16 4 O -0.41 -4.48 17.65 5.54 0.10 -4.38 16 5 C 0.51 5.22 8.31 -11.21 -0.09 5.12 16 6 O -0.40 -4.98 17.88 5.54 0.10 -4.88 16 7 N -0.56 -5.32 2.15 -122.52 -0.26 -5.58 16 8 C 0.13 1.09 6.45 -5.20 -0.03 1.05 16 9 C 0.44 6.01 8.03 36.00 0.29 6.30 16 10 O -0.50 -8.45 16.18 -18.75 -0.30 -8.76 16 11 O -0.35 -5.24 10.22 -39.25 -0.40 -5.64 16 12 C 0.07 1.21 5.47 37.16 0.20 1.42 16 13 C -0.11 -2.17 5.53 -26.73 -0.15 -2.32 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 19 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 23 C 0.72 6.80 8.32 -87.81 -0.73 6.06 16 24 O -0.48 -5.54 17.38 5.38 0.09 -5.44 16 25 H 0.10 0.31 7.76 -51.93 -0.40 -0.10 16 26 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.15 0.85 7.98 -51.93 -0.41 0.43 16 29 H 0.15 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -35.07 334.58 -4.97 -40.05 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -4.16 Total: -6.47 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -0.50 Total: 10.44 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.08 Total: -36.31 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.41 Total: -29.11 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.07 -4.97 -40.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733564477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.457 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds