Wall clock time and date at job start Tue Mar 31 2020 03:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35064 * 125.56312 * 2 1 4 4 O 1.21296 * 127.28301 * 359.71483 * 3 2 1 5 5 C 1.49974 * 105.42928 * 179.73684 * 3 2 1 6 6 O 1.21302 * 127.28159 * 179.97438 * 5 3 2 7 7 N 1.35059 * 105.43708 * 0.02562 * 5 3 2 8 8 C 1.46496 * 125.57124 * 179.97438 * 7 5 3 9 9 C 1.50698 * 109.47177 * 90.02665 * 8 7 5 10 10 O 1.20827 * 119.99988 * 359.97438 * 9 8 7 11 11 O 1.34227 * 120.00275 * 180.02562 * 9 8 7 12 12 C 1.45203 * 117.00116 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47028 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.46933 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46925 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00324 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99731 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46922 * 89.99609 * 19 17 15 21 21 H 1.48495 * 109.47063 * 209.99507 * 19 17 15 22 22 H 1.48501 * 109.47192 * 329.99907 * 19 17 15 23 23 C 1.34272 * 125.56631 * 179.69772 * 2 1 3 24 24 O 1.21481 * 124.29999 * 0.23883 * 23 2 1 25 25 H 1.08999 * 109.47253 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47083 * 120.02480 * 1 2 3 27 27 H 1.08997 * 109.46837 * 240.02032 * 1 2 3 28 28 H 1.09004 * 109.47000 * 210.02334 * 8 7 5 29 29 H 1.08998 * 109.47015 * 330.02143 * 8 7 5 30 30 H 1.08998 * 109.46663 * 299.99441 * 12 11 9 31 31 H 1.08993 * 109.46943 * 59.99930 * 12 11 9 32 32 H 1.09003 * 109.46827 * 299.99752 * 13 12 11 33 33 H 1.08997 * 109.47197 * 59.99676 * 13 12 11 34 34 H 1.09003 * 109.47207 * 299.99575 * 14 13 12 35 35 H 1.08997 * 109.47397 * 59.99856 * 14 13 12 36 36 H 0.97002 * 119.99622 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.0987 0.0000 4 8 1.8928 2.2577 -0.0048 5 6 3.6587 0.5825 0.0066 6 8 4.6807 1.2358 0.0083 7 7 3.5481 -0.7636 0.0092 8 6 4.6659 -1.7104 0.0152 9 6 5.0438 -2.0325 1.4380 10 8 4.4416 -1.5229 2.3532 11 8 6.0502 -2.8846 1.6887 12 6 6.3587 -3.1486 3.0828 13 6 7.5243 -4.1360 3.1691 14 6 7.8498 -4.4136 4.6380 15 6 8.9974 -5.3866 4.7230 16 1 9.4492 -5.7691 3.8196 17 6 9.4700 -5.7894 5.9541 18 7 8.9195 -5.3240 7.0541 19 14 10.8921 -6.9960 6.0594 20 1 12.1747 -6.2481 6.0888 21 1 10.7631 -7.8063 7.2971 22 1 10.8691 -7.8928 4.8760 23 6 2.2460 -1.0922 0.0058 24 8 1.8279 -2.2328 0.0076 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5142 -0.8898 27 1 -0.3633 -0.5135 0.8902 28 1 4.3697 -2.6254 -0.4980 29 1 5.5202 -1.2672 -0.4963 30 1 6.6341 -2.2167 3.5766 31 1 5.4843 -3.5755 3.5738 32 1 7.2484 -5.0678 2.6753 33 1 8.3989 -3.7095 2.6778 34 1 8.1258 -3.4817 5.1314 35 1 6.9753 -4.8399 5.1296 36 1 9.2523 -5.6071 7.9201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733564477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:37 Heat of formation + Delta-G solvation = -166.860494 kcal Electronic energy + Delta-G solvation = -23355.868063 eV Core-core repulsion = 19420.616858 eV Total energy + Delta-G solvation = -3935.251205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.64242 -41.66025 -40.56884 -40.11313 -38.09138 -37.74517 -36.48381 -35.96287 -33.73892 -31.83142 -29.24735 -28.10378 -26.90615 -25.31864 -23.59987 -23.18981 -22.20428 -21.98519 -19.53471 -19.18970 -18.72437 -18.43583 -18.35628 -17.98397 -17.74319 -17.34032 -16.63882 -16.59127 -16.45080 -15.97973 -15.84459 -15.69942 -14.71724 -14.23391 -14.19918 -14.10918 -14.08562 -13.77190 -13.59772 -13.45800 -12.83473 -12.52576 -12.45841 -12.37981 -12.25029 -12.12871 -11.69603 -11.50942 -11.44680 -11.36518 -11.24006 -11.09308 -10.57639 -8.22185 -6.33649 -1.00635 0.34485 0.77034 0.92432 1.13110 1.27827 1.42051 1.43319 1.54465 1.67723 2.41334 2.56763 3.12107 3.34016 3.35964 3.81415 3.93940 3.99212 4.01511 4.08919 4.16168 4.38802 4.43654 4.54356 4.76523 4.79200 4.82351 5.07103 5.26018 5.31510 5.36460 5.49632 5.63399 5.80059 5.85622 6.18145 6.22778 6.46137 6.82758 7.36159 8.90094 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.036164 B = 0.002433 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.060777 B =11505.032964 C =11671.951071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.565 5.565 3 C 0.524 3.476 4 O -0.427 6.427 5 C 0.516 3.484 6 O -0.425 6.425 7 N -0.564 5.564 8 C 0.135 3.865 9 C 0.440 3.560 10 O -0.540 6.540 11 O -0.344 6.344 12 C 0.079 3.921 13 C -0.094 4.094 14 C 0.024 3.976 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.260 1.260 23 C 0.719 3.281 24 O -0.497 6.497 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.182 0.818 29 H 0.181 0.819 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.070 0.930 34 H -0.005 1.005 35 H -0.004 1.004 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 10.066 -20.664 28.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.313 5.313 3 C 0.305 3.695 4 O -0.293 6.293 5 C 0.297 3.703 6 O -0.290 6.290 7 N -0.313 5.313 8 C 0.014 3.986 9 C 0.283 3.717 10 O -0.430 6.430 11 O -0.259 6.259 12 C 0.005 3.995 13 C -0.131 4.131 14 C -0.013 4.013 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.184 1.184 23 C 0.423 3.577 24 O -0.366 6.366 25 H 0.133 0.867 26 H 0.125 0.875 27 H 0.111 0.889 28 H 0.199 0.801 29 H 0.198 0.802 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.595 10.547 -20.187 28.181 hybrid contribution 0.616 -0.458 1.092 1.335 sum -15.979 10.089 -19.096 26.866 Atomic orbital electron populations 1.22374 0.70687 1.06725 1.06031 1.46621 1.11204 1.05826 1.67667 1.20525 0.87203 0.85551 0.76235 1.90860 1.79410 1.17250 1.41738 1.21039 0.91204 0.82334 0.75699 1.90874 1.34335 1.62929 1.40873 1.46298 1.08012 1.08482 1.68504 1.21529 0.90165 0.96995 0.89907 1.24592 0.77369 0.75847 0.93881 1.90701 1.52817 1.51120 1.48357 1.86449 1.49005 1.58639 1.31833 1.23190 0.98986 0.99742 0.77557 1.21464 0.95603 0.97680 0.98361 1.18945 0.95594 0.95503 0.91243 1.21636 1.16990 1.26463 0.92879 0.91461 1.26023 1.00037 0.98545 0.95415 1.70102 1.43393 1.45811 0.98216 0.85388 0.78798 0.78621 0.77895 1.19769 1.20952 1.18392 1.15835 0.80568 0.85103 0.76222 1.91058 1.76137 1.19029 1.50336 0.86749 0.87477 0.88940 0.80083 0.80201 0.91957 0.91862 0.91061 0.91121 0.98632 0.98565 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.95 127.77 1.40 1.92 16 2 N -0.56 -7.77 3.06 -797.76 -2.44 -10.21 16 3 C 0.52 9.04 8.31 87.38 0.73 9.77 16 4 O -0.43 -8.97 17.65 -3.08 -0.05 -9.03 16 5 C 0.52 9.91 8.31 87.39 0.73 10.64 16 6 O -0.43 -10.25 17.88 -3.10 -0.06 -10.31 16 7 N -0.56 -9.59 2.15 -778.33 -1.67 -11.26 16 8 C 0.13 1.90 6.45 85.63 0.55 2.45 16 9 C 0.44 11.30 8.03 71.24 0.57 11.87 16 10 O -0.54 -17.98 16.18 21.96 0.36 -17.62 16 11 O -0.34 -9.83 10.22 -51.39 -0.53 -10.36 16 12 C 0.08 2.77 5.47 71.98 0.39 3.16 16 13 C -0.09 -3.70 5.53 30.59 0.17 -3.53 16 14 C 0.02 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 17 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 18 N -0.94 -56.74 13.29 21.45 0.28 -56.46 16 19 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 23 C 0.72 12.39 8.32 179.36 1.49 13.88 16 24 O -0.50 -10.55 17.38 -3.66 -0.06 -10.62 16 25 H 0.11 0.47 7.76 -2.39 -0.02 0.45 16 26 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.18 1.42 7.98 -2.39 -0.02 1.40 16 29 H 0.18 1.40 8.10 -2.39 -0.02 1.38 16 30 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 31 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 32 H 0.07 2.68 8.14 -2.39 -0.02 2.67 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -76.37 334.58 5.84 -70.53 By element: Atomic # 1 Polarization: -3.33 SS G_CDS: 1.12 Total: -2.22 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 6.87 Total: 21.93 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -3.83 Total: -77.93 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -0.34 Total: -57.93 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.37 5.84 -70.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733564477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.334 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds