Wall clock time and date at job start Tue Mar 31 2020 04:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48497 * 109.47007 * 240.00016 * 3 2 1 5 5 H 1.48505 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47366 * 119.99531 * 3 2 1 7 7 C 1.38948 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00429 * 201.13132 * 7 2 1 9 9 N 1.37096 * 119.99830 * 21.13378 * 7 2 1 10 10 C 1.46504 * 120.00225 * 16.25776 * 9 7 2 11 11 C 1.50700 * 109.47359 * 264.14883 * 10 9 7 12 12 O 1.20825 * 119.99717 * 359.97438 * 11 10 9 13 13 O 1.34221 * 120.00053 * 179.97438 * 11 10 9 14 14 C 1.34776 * 119.99927 * 196.26033 * 9 7 2 15 15 O 1.21293 * 120.00186 * 359.97438 * 14 9 7 16 16 C 1.50701 * 119.99994 * 179.97438 * 14 9 7 17 17 C 1.52995 * 109.47390 * 179.97438 * 16 14 9 18 18 C 1.52999 * 109.47479 * 179.97438 * 17 16 14 19 19 N 1.46501 * 109.47173 * 180.02562 * 18 17 16 20 20 C 1.34780 * 119.99886 * 180.02562 * 19 18 17 21 21 O 1.21279 * 119.99920 * 0.02562 * 20 19 18 22 22 C 1.50700 * 120.00054 * 179.97438 * 20 19 18 23 23 C 1.53002 * 117.49927 * 248.62270 * 22 20 19 24 24 C 1.52998 * 117.49817 * 179.97438 * 22 20 19 25 25 H 0.96995 * 120.00077 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46672 * 24.14712 * 10 9 7 27 27 H 1.08998 * 109.47021 * 144.13969 * 10 9 7 28 28 H 0.96705 * 116.99830 * 179.97438 * 13 11 10 29 29 H 1.09000 * 109.47478 * 59.99576 * 16 14 9 30 30 H 1.09007 * 109.47356 * 300.00202 * 16 14 9 31 31 H 1.09007 * 109.47310 * 60.00080 * 17 16 14 32 32 H 1.09003 * 109.47479 * 300.00081 * 17 16 14 33 33 H 1.08994 * 109.47116 * 300.00300 * 18 17 16 34 34 H 1.08998 * 109.46838 * 60.00421 * 18 17 16 35 35 H 0.96994 * 119.99983 * 359.97438 * 19 18 17 36 36 H 1.09006 * 115.54539 * 34.32936 * 22 20 19 37 37 H 1.09003 * 117.49864 * 359.97438 * 23 22 20 38 38 H 1.08999 * 117.49514 * 145.01910 * 23 22 20 39 39 H 1.09000 * 117.49992 * 214.98023 * 24 22 20 40 40 H 1.08993 * 117.49789 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0345 -1.2346 0.3377 9 7 1.3927 -2.3509 -0.4270 10 6 0.1549 -2.2708 -1.2067 11 6 -1.0289 -2.4276 -0.2874 12 8 -0.8563 -2.5900 0.8974 13 8 -2.2749 -2.3868 -0.7848 14 6 1.9255 -3.5527 -0.1301 15 8 2.9505 -3.6190 0.5150 16 6 1.2478 -4.8142 -0.5996 17 6 2.0517 -6.0292 -0.1326 18 6 1.3634 -7.3100 -0.6087 19 7 2.1329 -8.4734 -0.1610 20 6 1.7134 -9.7172 -0.4669 21 8 0.6990 -9.8732 -1.1131 22 6 2.5053 -10.9140 -0.0068 23 6 3.2227 -11.7400 -1.0764 24 6 1.9766 -12.2989 -0.3855 25 1 -0.4850 0.8400 -0.0004 26 1 0.1018 -1.3032 -1.7057 27 1 0.1434 -3.0654 -1.9527 28 1 -3.0022 -2.4924 -0.1562 29 1 1.1913 -4.8128 -1.6881 30 1 0.2413 -4.8623 -0.1837 31 1 2.1085 -6.0308 0.9560 32 1 3.0580 -5.9809 -0.5488 33 1 0.3573 -7.3581 -0.1922 34 1 1.3063 -7.3086 -1.6972 35 1 2.9447 -8.3486 0.3549 36 1 2.9948 -10.8097 0.9615 37 1 3.1215 -11.4180 -2.1129 38 1 4.1845 -12.1793 -0.8119 39 1 2.1190 -13.1058 0.3333 40 1 1.0558 -12.3443 -0.9670 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:04 Heat of formation + Delta-G solvation = -135.427268 kcal Electronic energy + Delta-G solvation = -23990.708056 eV Core-core repulsion = 20192.652993 eV Total energy + Delta-G solvation = -3798.055063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.02190 -39.49706 -38.25808 -36.62148 -35.53797 -35.14098 -34.51319 -32.45761 -31.65652 -27.88053 -27.33643 -24.99682 -23.68120 -22.70306 -21.67098 -21.11432 -20.16661 -18.77194 -17.56206 -17.22231 -16.94396 -16.44121 -15.93617 -15.82098 -15.60031 -15.16026 -14.68030 -14.50452 -14.38777 -14.15955 -13.94401 -13.25942 -12.76353 -12.57904 -12.21034 -12.01525 -11.83230 -11.77947 -11.63850 -11.51004 -11.14106 -10.94233 -10.90204 -10.77941 -10.64135 -10.50889 -10.38564 -10.30880 -9.94516 -9.67797 -9.11168 -9.07520 -8.56942 -7.95762 -6.48523 -3.92836 2.38336 3.03597 3.13807 3.21538 3.25323 3.41020 3.60826 3.61883 4.04087 4.21386 4.46148 4.55182 4.61126 4.65889 4.89125 4.98175 5.14494 5.22216 5.30165 5.37560 5.47467 5.65833 5.67473 5.74003 5.82591 5.84645 5.88628 6.04997 6.33943 6.36959 6.45059 6.51473 6.56028 7.43432 7.45699 7.51340 7.94141 8.14459 8.32599 8.98981 9.04998 9.27094 9.79990 10.60372 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.002972 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.842503 B = 9419.126156 C =10214.024167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.029 3.971 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.433 5.433 10 C 0.145 3.855 11 C 0.489 3.511 12 O -0.505 6.505 13 O -0.534 6.534 14 C 0.461 3.539 15 O -0.578 6.578 16 C -0.132 4.132 17 C -0.109 4.109 18 C 0.117 3.883 19 N -0.723 5.723 20 C 0.539 3.461 21 O -0.545 6.545 22 C -0.195 4.195 23 C -0.153 4.153 24 C -0.149 4.149 25 H 0.272 0.728 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.392 0.608 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.403 0.597 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -15.263 -4.015 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.125 0.875 9 N -0.152 5.152 10 C 0.018 3.982 11 C 0.329 3.671 12 O -0.390 6.390 13 O -0.345 6.345 14 C 0.250 3.750 15 O -0.461 6.461 16 C -0.173 4.173 17 C -0.147 4.147 18 C -0.006 4.006 19 N -0.374 5.374 20 C 0.326 3.674 21 O -0.422 6.422 22 C -0.217 4.217 23 C -0.191 4.191 24 C -0.186 4.186 25 H 0.082 0.918 26 H 0.147 0.853 27 H 0.096 0.904 28 H 0.249 0.751 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.238 0.762 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.184 -15.210 -4.096 15.796 hybrid contribution -0.047 1.147 0.917 1.469 sum 1.137 -14.063 -3.179 14.463 Atomic orbital electron populations 1.69782 1.06047 1.28036 1.48429 1.25233 0.95322 0.99998 0.96813 0.85927 0.78970 0.80282 0.79136 1.19825 1.21021 1.19832 1.19673 0.97670 0.83369 1.42615 0.87491 1.43452 1.19588 1.05520 1.46659 1.20700 0.81362 1.04857 0.91278 1.23850 0.83180 0.70811 0.89217 1.90616 1.85611 1.45026 1.17756 1.84524 1.17406 1.86318 1.46269 1.19980 0.87352 0.84192 0.83444 1.90518 1.26185 1.86555 1.42869 1.21488 1.00314 0.93838 1.01658 1.21443 0.99606 0.91237 1.02464 1.21481 0.95386 0.83976 0.99785 1.45968 1.29001 1.05602 1.56793 1.19660 0.84813 0.83682 0.79274 1.90692 1.25426 1.86131 1.39984 1.22219 1.05729 0.92018 1.01694 1.22946 0.97079 1.01779 0.97259 1.22953 0.98887 0.93662 1.03139 0.91800 0.85299 0.90382 0.75122 0.90060 0.90191 0.90626 0.90603 0.91428 0.91407 0.76248 0.85812 0.88229 0.87780 0.87971 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.91 9.26 55.50 0.51 -22.40 16 2 C 0.03 0.74 4.89 -17.47 -0.09 0.66 16 3 Si 0.93 20.28 29.60 -169.99 -5.03 15.24 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.31 -8.28 9.35 -14.93 -0.14 -8.42 16 8 H 0.11 3.03 7.36 -52.48 -0.39 2.65 16 9 N -0.43 -10.65 2.18 -116.09 -0.25 -10.91 16 10 C 0.14 3.06 4.97 -5.19 -0.03 3.03 16 11 C 0.49 10.63 5.87 36.01 0.21 10.84 16 12 O -0.50 -12.95 16.81 -18.75 -0.32 -13.27 16 13 O -0.53 -9.42 13.42 -39.24 -0.53 -9.95 16 14 C 0.46 10.81 7.42 -10.98 -0.08 10.72 16 15 O -0.58 -15.34 15.62 5.55 0.09 -15.26 16 16 C -0.13 -2.29 4.31 -27.88 -0.12 -2.41 16 17 C -0.11 -1.63 4.62 -26.73 -0.12 -1.75 16 18 C 0.12 1.53 5.67 -4.04 -0.02 1.51 16 19 N -0.72 -8.35 5.56 -60.30 -0.33 -8.68 16 20 C 0.54 6.79 7.61 -10.98 -0.08 6.71 16 21 O -0.54 -8.93 16.26 5.56 0.09 -8.84 16 22 C -0.20 -1.75 6.19 -91.77 -0.57 -2.32 16 23 C -0.15 -1.15 10.24 -26.70 -0.27 -1.43 16 24 C -0.15 -1.22 10.05 -26.71 -0.27 -1.49 16 25 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 26 H 0.13 2.85 6.34 -51.93 -0.33 2.52 16 27 H 0.08 1.31 6.69 -51.93 -0.35 0.97 16 28 H 0.39 5.32 9.10 45.56 0.41 5.73 16 29 H 0.08 1.19 7.41 -51.93 -0.39 0.81 16 30 H 0.08 1.40 7.52 -51.93 -0.39 1.01 16 31 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 3.72 8.47 -40.82 -0.35 3.37 16 36 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.11 1.06 7.67 -51.93 -0.40 0.66 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -35.36 345.13 -6.83 -42.19 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -4.68 Total: 11.02 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: -1.58 Total: 15.65 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.07 Total: -41.99 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -0.66 Total: -47.31 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.36 -6.83 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.241 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds