Wall clock time and date at job start Tue Mar 31 2020 04:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48497 * 109.47007 * 240.00016 * 3 2 1 5 5 H 1.48505 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47366 * 119.99531 * 3 2 1 7 7 C 1.38948 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00429 * 201.13132 * 7 2 1 9 9 N 1.37096 * 119.99830 * 21.13378 * 7 2 1 10 10 C 1.46504 * 120.00225 * 16.25776 * 9 7 2 11 11 C 1.50700 * 109.47359 * 264.14883 * 10 9 7 12 12 O 1.20825 * 119.99717 * 359.97438 * 11 10 9 13 13 O 1.34221 * 120.00053 * 179.97438 * 11 10 9 14 14 C 1.34776 * 119.99927 * 196.26033 * 9 7 2 15 15 O 1.21293 * 120.00186 * 359.97438 * 14 9 7 16 16 C 1.50701 * 119.99994 * 179.97438 * 14 9 7 17 17 C 1.52995 * 109.47390 * 179.97438 * 16 14 9 18 18 C 1.52999 * 109.47479 * 179.97438 * 17 16 14 19 19 N 1.46501 * 109.47173 * 180.02562 * 18 17 16 20 20 C 1.34780 * 119.99886 * 180.02562 * 19 18 17 21 21 O 1.21279 * 119.99920 * 0.02562 * 20 19 18 22 22 C 1.50700 * 120.00054 * 179.97438 * 20 19 18 23 23 C 1.53002 * 117.49927 * 248.62270 * 22 20 19 24 24 C 1.52998 * 117.49817 * 179.97438 * 22 20 19 25 25 H 0.96995 * 120.00077 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46672 * 24.14712 * 10 9 7 27 27 H 1.08998 * 109.47021 * 144.13969 * 10 9 7 28 28 H 0.96705 * 116.99830 * 179.97438 * 13 11 10 29 29 H 1.09000 * 109.47478 * 59.99576 * 16 14 9 30 30 H 1.09007 * 109.47356 * 300.00202 * 16 14 9 31 31 H 1.09007 * 109.47310 * 60.00080 * 17 16 14 32 32 H 1.09003 * 109.47479 * 300.00081 * 17 16 14 33 33 H 1.08994 * 109.47116 * 300.00300 * 18 17 16 34 34 H 1.08998 * 109.46838 * 60.00421 * 18 17 16 35 35 H 0.96994 * 119.99983 * 359.97438 * 19 18 17 36 36 H 1.09006 * 115.54539 * 34.32936 * 22 20 19 37 37 H 1.09003 * 117.49864 * 359.97438 * 23 22 20 38 38 H 1.08999 * 117.49514 * 145.01910 * 23 22 20 39 39 H 1.09000 * 117.49992 * 214.98023 * 24 22 20 40 40 H 1.08993 * 117.49789 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0345 -1.2346 0.3377 9 7 1.3927 -2.3509 -0.4270 10 6 0.1549 -2.2708 -1.2067 11 6 -1.0289 -2.4276 -0.2874 12 8 -0.8563 -2.5900 0.8974 13 8 -2.2749 -2.3868 -0.7848 14 6 1.9255 -3.5527 -0.1301 15 8 2.9505 -3.6190 0.5150 16 6 1.2478 -4.8142 -0.5996 17 6 2.0517 -6.0292 -0.1326 18 6 1.3634 -7.3100 -0.6087 19 7 2.1329 -8.4734 -0.1610 20 6 1.7134 -9.7172 -0.4669 21 8 0.6990 -9.8732 -1.1131 22 6 2.5053 -10.9140 -0.0068 23 6 3.2227 -11.7400 -1.0764 24 6 1.9766 -12.2989 -0.3855 25 1 -0.4850 0.8400 -0.0004 26 1 0.1018 -1.3032 -1.7057 27 1 0.1434 -3.0654 -1.9527 28 1 -3.0022 -2.4924 -0.1562 29 1 1.1913 -4.8128 -1.6881 30 1 0.2413 -4.8623 -0.1837 31 1 2.1085 -6.0308 0.9560 32 1 3.0580 -5.9809 -0.5488 33 1 0.3573 -7.3581 -0.1922 34 1 1.3063 -7.3086 -1.6972 35 1 2.9447 -8.3486 0.3549 36 1 2.9948 -10.8097 0.9615 37 1 3.1215 -11.4180 -2.1129 38 1 4.1845 -12.1793 -0.8119 39 1 2.1190 -13.1058 0.3333 40 1 1.0558 -12.3443 -0.9670 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:03 Heat of formation + Delta-G solvation = -161.337075 kcal Electronic energy + Delta-G solvation = -23991.831589 eV Core-core repulsion = 20192.652993 eV Total energy + Delta-G solvation = -3799.178597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27131 -40.93976 -39.98721 -37.48744 -37.03596 -36.48720 -36.23148 -33.98021 -33.34838 -29.58263 -28.72641 -26.59904 -24.83234 -23.29689 -22.96406 -22.67194 -21.20266 -20.37822 -19.02104 -18.70125 -18.43728 -18.01971 -17.48732 -17.07497 -16.84378 -16.35216 -16.21758 -16.03924 -15.87004 -15.55378 -15.08836 -14.68492 -14.30008 -13.75662 -13.59752 -13.52505 -13.39599 -13.15870 -13.15466 -12.64849 -12.47780 -12.42175 -12.31960 -12.18442 -12.13032 -11.84856 -11.53234 -11.51648 -11.43387 -10.95710 -10.94839 -10.44112 -10.13246 -9.87041 -8.43606 -5.95133 1.38200 1.43074 1.47008 1.53399 1.70205 1.88268 2.10673 2.28335 2.54915 2.93566 2.96719 3.12664 3.68630 3.75650 3.87795 3.98524 4.01058 4.07238 4.22033 4.26650 4.34538 4.54548 4.65336 4.68845 4.75824 4.77833 4.93250 4.95150 5.04826 5.12852 5.22397 5.24565 5.41782 5.45649 5.95824 6.01689 6.38866 6.52643 7.11033 7.20774 7.31150 7.46189 7.93512 8.62843 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.002972 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.842503 B = 9419.126156 C =10214.024167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.001 4.001 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.342 4.342 8 H 0.080 0.920 9 N -0.447 5.447 10 C 0.141 3.859 11 C 0.497 3.503 12 O -0.551 6.551 13 O -0.518 6.518 14 C 0.449 3.551 15 O -0.621 6.621 16 C -0.123 4.123 17 C -0.096 4.096 18 C 0.127 3.873 19 N -0.716 5.716 20 C 0.534 3.466 21 O -0.589 6.589 22 C -0.203 4.203 23 C -0.141 4.141 24 C -0.152 4.152 25 H 0.274 0.726 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.413 0.587 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -16.067 -4.844 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.203 4.203 3 Si 0.815 3.185 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.469 4.469 8 H 0.098 0.902 9 N -0.166 5.166 10 C 0.015 3.985 11 C 0.339 3.661 12 O -0.440 6.440 13 O -0.331 6.331 14 C 0.240 3.760 15 O -0.507 6.507 16 C -0.163 4.163 17 C -0.134 4.134 18 C 0.003 3.997 19 N -0.367 5.367 20 C 0.322 3.678 21 O -0.470 6.470 22 C -0.224 4.224 23 C -0.178 4.178 24 C -0.190 4.190 25 H 0.084 0.916 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.273 0.727 29 H 0.134 0.866 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.168 0.832 37 H 0.106 0.894 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.202 -16.013 -4.946 16.803 hybrid contribution -0.136 1.395 1.173 1.827 sum 1.066 -14.618 -3.773 15.135 Atomic orbital electron populations 1.69866 1.06788 1.28751 1.47933 1.25947 0.96139 1.02353 0.95828 0.85025 0.77879 0.76628 0.78945 1.18623 1.19952 1.20816 1.19596 0.97249 0.85335 1.44752 0.90244 1.43635 1.20674 1.05337 1.46966 1.20879 0.80010 1.06107 0.91482 1.23874 0.84287 0.69521 0.88415 1.90606 1.86462 1.47351 1.19619 1.84453 1.16777 1.85413 1.46413 1.21001 0.86852 0.85587 0.82568 1.90477 1.28128 1.87407 1.44709 1.21469 0.99757 0.91422 1.03672 1.21283 0.99502 0.91204 1.01425 1.21255 0.94884 0.83595 0.99931 1.45913 1.29191 1.05103 1.56532 1.20322 0.84478 0.84624 0.78396 1.90669 1.27480 1.86775 1.42098 1.22292 1.06196 0.90606 1.03303 1.23054 0.98003 1.00481 0.96253 1.23026 0.98413 0.93919 1.03624 0.91584 0.86256 0.85761 0.72718 0.86627 0.90000 0.92180 0.90484 0.92191 0.90890 0.74804 0.83220 0.89392 0.84957 0.85474 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.09 9.26 21.66 0.20 -45.89 16 2 C 0.00 -0.07 4.89 84.93 0.42 0.35 16 3 Si 0.99 41.61 29.60 68.60 2.03 43.64 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.34 -18.94 9.35 84.04 0.79 -18.16 16 8 H 0.08 4.72 7.36 -2.91 -0.02 4.70 16 9 N -0.45 -22.18 2.18 -639.59 -1.39 -23.57 16 10 C 0.14 5.80 4.97 85.63 0.43 6.22 16 11 C 0.50 21.04 5.87 71.24 0.42 21.46 16 12 O -0.55 -28.29 16.81 21.97 0.37 -27.92 16 13 O -0.52 -17.13 13.42 -51.33 -0.69 -17.82 16 14 C 0.45 21.23 7.42 87.66 0.65 21.88 16 15 O -0.62 -33.96 15.62 -3.07 -0.05 -34.00 16 16 C -0.12 -4.12 4.31 29.85 0.13 -3.99 16 17 C -0.10 -2.79 4.62 30.59 0.14 -2.65 16 18 C 0.13 3.18 5.67 86.38 0.49 3.67 16 19 N -0.72 -15.69 5.56 -463.06 -2.57 -18.26 16 20 C 0.53 12.94 7.61 87.66 0.67 13.60 16 21 O -0.59 -19.27 16.26 -3.03 -0.05 -19.32 16 22 C -0.20 -3.24 6.19 -11.54 -0.07 -3.31 16 23 C -0.14 -1.80 10.24 30.61 0.31 -1.48 16 24 C -0.15 -2.24 10.05 30.61 0.31 -1.94 16 25 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 26 H 0.12 5.16 6.34 -2.39 -0.02 5.15 16 27 H 0.12 3.85 6.69 -2.39 -0.02 3.83 16 28 H 0.41 10.23 9.10 -74.05 -0.67 9.56 16 29 H 0.12 3.07 7.41 -2.39 -0.02 3.05 16 30 H 0.08 2.76 7.52 -2.38 -0.02 2.75 16 31 H 0.06 1.93 8.10 -2.38 -0.02 1.92 16 32 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.42 7.04 8.47 -92.71 -0.79 6.25 16 36 H 0.15 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.66 7.67 -2.39 -0.02 1.64 16 Total: -1.00 -79.06 345.13 2.15 -76.91 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.37 Total: 30.58 kcal Atomic # 6 Polarization: 30.99 SS G_CDS: 4.67 Total: 35.66 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -3.76 Total: -87.72 kcal Atomic # 8 Polarization: -98.65 SS G_CDS: -0.42 Total: -99.07 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -79.06 2.15 -76.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.431 kcal (2) G-P(sol) polarization free energy of solvation -79.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds