Wall clock time and date at job start Tue Mar 31 2020 03:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 5 5 C 1.34674 * 116.99915 * 90.00055 * 4 2 1 6 6 O 1.21440 * 120.00135 * 359.97438 * 5 4 2 7 7 C 1.48019 * 119.99994 * 180.02562 * 5 4 2 8 8 N 1.31579 * 128.74705 * 359.67382 * 7 5 4 9 9 O 1.20860 * 109.35330 * 179.82490 * 8 7 5 10 10 N 1.20845 * 116.12164 * 0.49578 * 9 8 7 11 11 C 1.31318 * 109.46843 * 359.69649 * 10 9 8 12 12 N 1.38793 * 128.72504 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 14 14 O 1.21285 * 120.00040 * 114.99997 * 13 2 1 15 15 N 1.34778 * 119.99902 * 295.00139 * 13 2 1 16 16 C 1.46493 * 120.00087 * 359.97438 * 15 13 2 17 17 C 1.46505 * 119.99823 * 179.97438 * 15 13 2 18 18 C 1.50697 * 109.46900 * 89.99912 * 17 15 13 19 19 H 1.07995 * 120.00161 * 0.02562 * 18 17 15 20 20 C 1.37880 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31522 * 119.99535 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46712 * 60.00253 * 22 20 18 24 24 H 1.48495 * 109.47092 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47224 * 300.00309 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.96997 * 120.00149 * 180.02562 * 12 11 10 30 30 H 0.97005 * 120.00008 * 0.02570 * 12 11 10 31 31 H 1.09002 * 109.47115 * 89.99747 * 16 15 13 32 32 H 1.08998 * 109.47192 * 209.99907 * 16 15 13 33 33 H 1.08999 * 109.47064 * 329.99847 * 16 15 13 34 34 H 1.08997 * 109.46961 * 210.00478 * 17 15 13 35 35 H 1.09005 * 109.46984 * 329.99937 * 17 15 13 36 36 H 0.97003 * 119.99529 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2178 0.0666 -2.2848 6 8 1.9969 1.2603 -2.2541 7 6 2.7100 -0.5631 -3.5306 8 7 3.0070 -1.8254 -3.7537 9 8 3.3737 -1.9544 -4.8981 10 7 3.4001 -0.9470 -5.5651 11 6 2.9983 0.0700 -4.8380 12 7 2.8752 1.4034 -5.2029 13 6 2.0324 -0.7104 1.2304 14 8 2.6531 -1.7467 1.1214 15 7 1.7920 -0.1942 2.4520 16 6 1.0427 1.0577 2.5836 17 6 2.2799 -0.8852 3.6481 18 6 3.6615 -0.3879 3.9870 19 1 4.1292 0.3676 3.3730 20 6 4.3282 -0.8966 5.0814 21 7 3.7584 -1.8162 5.8294 22 14 6.0405 -0.2797 5.5019 23 1 5.9905 1.1820 5.7598 24 1 6.5346 -0.9792 6.7150 25 1 6.9572 -0.5507 4.3655 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 2.5628 2.0562 -4.5570 30 1 3.1016 1.6825 -6.1039 31 1 -0.0214 0.8372 2.6678 32 1 1.3755 1.5882 3.4758 33 1 1.2166 1.6793 1.7053 34 1 1.6073 -0.6862 4.4824 35 1 2.3162 -1.9580 3.4586 36 1 4.2276 -2.1744 6.5991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744871138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:21 Heat of formation + Delta-G solvation = 11.628107 kcal Electronic energy + Delta-G solvation = -24028.412063 eV Core-core repulsion = 20133.193455 eV Total energy + Delta-G solvation = -3895.218607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.99483 -40.85533 -39.05736 -36.98052 -36.28998 -34.99331 -34.88373 -32.96007 -32.40588 -31.60775 -27.79220 -26.82355 -26.18285 -24.44995 -23.58967 -22.79255 -21.42471 -19.22383 -19.13033 -18.70199 -18.56343 -17.19338 -16.95096 -16.58670 -16.41218 -16.21969 -15.72542 -15.30394 -14.67008 -14.31778 -13.70649 -13.45715 -13.06535 -12.97572 -12.87096 -12.48974 -12.28945 -12.16925 -12.06852 -11.80514 -11.56934 -11.34906 -11.24835 -11.21961 -10.98579 -10.88631 -10.60779 -10.20339 -9.71006 -9.13275 -8.99977 -8.47368 -7.79307 -6.08810 -4.14125 0.39700 1.26509 1.77786 2.36897 2.43715 3.03968 3.17338 3.29944 3.34662 3.37512 3.42645 3.86604 4.16717 4.40945 4.50305 4.56768 4.75027 4.85085 4.94133 5.25827 5.39505 5.52362 5.54469 5.77056 5.87987 6.03720 6.14833 6.41148 6.89939 6.92557 7.26009 7.34306 7.42199 7.86623 8.16033 8.21780 8.31947 8.78544 8.93622 9.51034 10.99348 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.003522 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.113655 B = 7948.619770 C = 8492.663594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.110 0.890 4 O -0.303 6.303 5 C 0.566 3.434 6 O -0.495 6.495 7 C -0.078 4.078 8 N -0.269 5.269 9 O 0.356 5.644 10 N -0.416 5.416 11 C 0.332 3.668 12 N -0.800 5.800 13 C 0.507 3.493 14 O -0.514 6.514 15 N -0.594 5.594 16 C 0.075 3.925 17 C 0.247 3.753 18 C -0.532 4.532 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.276 1.276 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.429 0.571 30 H 0.418 0.582 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.046 0.954 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 8.493 -19.319 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.128 0.872 4 O -0.216 6.216 5 C 0.407 3.593 6 O -0.382 6.382 7 C -0.242 4.242 8 N 0.018 4.982 9 O 0.131 5.869 10 N -0.165 5.165 11 C 0.069 3.931 12 N -0.356 5.356 13 C 0.291 3.709 14 O -0.389 6.389 15 N -0.328 5.328 16 C -0.069 4.069 17 C 0.129 3.871 18 C -0.570 4.570 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.263 0.737 30 H 0.250 0.750 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.618 6.999 -19.320 21.588 hybrid contribution 0.668 1.771 0.582 1.981 sum -5.950 8.770 -18.737 21.527 Atomic orbital electron populations 1.22310 0.91867 1.04413 1.04267 1.22839 0.96074 0.97694 0.82172 0.87190 1.86719 1.75781 1.40212 1.18935 1.18918 0.74112 0.84127 0.82107 1.90823 1.48752 1.14734 1.83870 1.24116 1.14934 0.89869 0.95288 1.75483 1.06235 1.17710 0.98770 1.85029 1.59216 1.28822 1.13846 1.75476 1.29045 0.93171 1.18803 1.22438 0.94138 0.89346 0.87138 1.41216 1.74465 1.01817 1.18080 1.19671 0.81424 0.86047 0.83746 1.90741 1.39346 1.23226 1.85610 1.48071 1.54034 1.23927 1.06774 1.21860 0.95424 0.86692 1.02881 1.19367 0.94329 0.93821 0.79604 1.21379 1.01060 1.23209 1.11393 0.92466 1.24930 0.98219 0.94840 0.95986 1.69921 1.38183 1.27889 1.17219 0.86540 0.84193 0.78771 0.77825 1.20209 1.21075 1.20138 0.88858 0.90667 0.91179 0.73683 0.75001 0.93023 0.90169 0.92380 0.94502 0.93582 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.28 37.16 0.34 -1.74 16 2 C 0.07 1.13 2.17 -27.89 -0.06 1.07 16 3 H 0.11 1.61 6.15 -51.93 -0.32 1.29 16 4 O -0.30 -5.20 9.43 -47.08 -0.44 -5.64 16 5 C 0.57 8.25 7.96 34.74 0.28 8.52 16 6 O -0.49 -6.82 15.40 -19.22 -0.30 -7.11 16 7 C -0.08 -1.03 7.66 -79.92 -0.61 -1.64 16 8 N -0.27 -3.72 12.28 33.67 0.41 -3.30 16 9 O 0.36 4.21 11.64 27.27 0.32 4.53 16 10 N -0.42 -4.57 12.26 31.58 0.39 -4.19 16 11 C 0.33 3.48 9.02 -152.43 -1.37 2.11 16 12 N -0.80 -5.36 9.09 31.55 0.29 -5.07 16 13 C 0.51 10.73 7.10 -10.99 -0.08 10.66 16 14 O -0.51 -13.44 16.09 -14.05 -0.23 -13.67 16 15 N -0.59 -12.31 2.86 -182.96 -0.52 -12.83 16 16 C 0.08 1.11 8.92 59.84 0.53 1.64 16 17 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 18 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 19 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 22 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H 0.09 0.98 5.12 -51.93 -0.27 0.71 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.43 2.66 8.02 -40.82 -0.33 2.33 16 30 H 0.42 1.66 8.95 -40.82 -0.37 1.30 16 31 H 0.05 0.62 7.02 -51.93 -0.36 0.26 16 32 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.06 0.70 6.08 -51.93 -0.32 0.39 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -34.61 322.59 -4.50 -39.11 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.57 Total: -1.18 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -1.42 Total: 13.33 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 1.30 Total: -51.01 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.65 Total: -21.89 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.61 -4.50 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744871138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.734 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds