Wall clock time and date at job start Tue Mar 31 2020 04:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.54048 * 2 1 4 4 C 1.53097 * 109.50916 * 120.10652 * 2 1 3 5 5 N 1.47012 * 109.25690 * 176.78292 * 4 2 1 6 6 C 1.46900 * 110.99808 * 177.61090 * 5 4 2 7 7 N 1.46505 * 109.47076 * 170.00339 * 6 5 4 8 8 N 1.40166 * 126.14383 * 90.02096 * 7 6 5 9 9 C 1.32247 * 107.75537 * 180.02562 * 8 7 6 10 10 C 1.40114 * 125.92569 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00037 * 174.04367 * 10 9 8 12 12 C 1.40041 * 119.99750 * 354.04503 * 10 9 8 13 13 N 1.30786 * 120.00308 * 5.99501 * 12 10 9 14 14 Si 1.86803 * 119.99709 * 186.00008 * 12 10 9 15 15 H 1.48491 * 109.47376 * 94.98108 * 14 12 10 16 16 H 1.48502 * 109.47044 * 214.98483 * 14 12 10 17 17 H 1.48510 * 109.47001 * 334.97992 * 14 12 10 18 18 N 1.38497 * 108.14758 * 359.97438 * 9 8 7 19 19 C 1.46501 * 125.83854 * 180.02562 * 18 9 8 20 20 C 1.34733 * 108.33144 * 359.73706 * 18 9 8 21 21 S 1.71199 * 125.97627 * 180.26238 * 20 18 9 22 22 C 1.47015 * 110.75342 * 301.38592 * 5 4 2 23 23 C 1.53097 * 109.25691 * 58.61763 * 22 5 4 24 24 O 1.43009 * 109.25750 * 303.14819 * 23 22 5 25 25 H 1.08996 * 109.46959 * 299.88402 * 1 2 3 26 26 H 1.08990 * 109.47107 * 59.89464 * 1 2 3 27 27 H 1.09003 * 109.46611 * 179.88990 * 1 2 3 28 28 H 1.09004 * 109.50015 * 56.85503 * 4 2 1 29 29 H 1.08997 * 109.50821 * 296.71919 * 4 2 1 30 30 H 1.08998 * 109.47059 * 289.99580 * 6 5 4 31 31 H 1.08997 * 109.47126 * 50.00204 * 6 5 4 32 32 H 0.97005 * 120.00268 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.46910 * 89.99542 * 19 18 9 34 34 H 1.08996 * 109.47579 * 210.00081 * 19 18 9 35 35 H 1.09001 * 109.46928 * 330.00237 * 19 18 9 36 36 H 1.09000 * 109.50705 * 178.54647 * 22 5 4 37 37 H 1.08994 * 109.51067 * 298.67865 * 22 5 4 38 38 H 1.09004 * 109.50955 * 63.08498 * 23 22 5 39 39 H 1.09002 * 109.50471 * 183.21639 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7239 1.2484 5 7 3.5094 -0.7884 1.2044 6 6 4.0448 -1.4268 2.4142 7 7 5.4748 -1.6901 2.2354 8 7 6.5232 -0.8203 2.5655 9 6 7.6592 -1.4209 2.2530 10 6 8.9444 -0.8901 2.4256 11 1 9.8122 -1.5013 2.2265 12 6 9.1035 0.4328 2.8564 13 7 8.0587 1.1357 3.2098 14 14 10.8081 1.1937 2.9261 15 1 11.0667 1.9446 1.6714 16 1 10.8894 2.1207 4.0834 17 1 11.8233 0.1207 3.0791 18 7 7.3582 -2.6660 1.7264 19 6 8.3299 -3.6550 1.2534 20 6 6.0191 -2.8149 1.7295 21 16 5.1588 -4.1899 1.1816 22 6 3.9640 -1.4883 -0.0059 23 6 3.4335 -0.7567 -1.2417 24 8 2.0076 -0.6762 -1.1662 25 1 -0.3633 0.5120 0.8910 26 1 -0.3633 0.5154 -0.8890 27 1 -0.3633 -1.0277 -0.0020 28 1 1.6333 -1.7343 1.2759 29 1 1.7275 -0.1794 2.1390 30 1 3.9013 -0.7648 3.2682 31 1 3.5216 -2.3665 2.5909 32 1 8.1689 2.0520 3.5085 33 1 8.6136 -4.3089 2.0782 34 1 7.8847 -4.2490 0.4553 35 1 9.2146 -3.1429 0.8750 36 1 5.0536 -1.5018 -0.0309 37 1 3.5868 -2.5109 0.0016 38 1 3.8534 0.2486 -1.2778 39 1 3.7201 -1.3041 -2.1397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794615779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:39 Heat of formation + Delta-G solvation = 45.547874 kcal Electronic energy + Delta-G solvation = -22921.440802 eV Core-core repulsion = 19606.279032 eV Total energy + Delta-G solvation = -3315.161770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04814 -39.36946 -36.10420 -34.13693 -33.68753 -32.65276 -30.75127 -28.95963 -27.66897 -26.65068 -25.55454 -23.99868 -22.55596 -21.26153 -21.01229 -20.07413 -17.83952 -16.84906 -16.48618 -16.05546 -15.82465 -15.31904 -15.02553 -14.98863 -14.73282 -14.43143 -13.97439 -13.71004 -13.38120 -12.54813 -12.39825 -12.32856 -12.27791 -11.96359 -11.86740 -11.75190 -11.55561 -11.16304 -11.08203 -10.99535 -10.70897 -10.58499 -10.37225 -10.09640 -9.62130 -9.49455 -9.28319 -8.93209 -8.17235 -7.09885 -6.87803 -6.70040 -5.19882 2.20029 2.45500 2.75061 2.88287 2.92610 3.25529 3.47447 3.60875 3.86566 3.97435 4.15153 4.78289 4.87410 5.12034 5.19711 5.23318 5.31636 5.49397 5.51028 5.58253 5.63884 5.68298 5.71470 5.78912 5.79602 5.97772 6.03467 6.13906 6.18173 6.23903 6.43146 6.48797 6.75421 6.92386 7.05260 7.08830 7.35464 7.52370 7.71698 8.16762 8.29576 9.07014 9.88420 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.016988 B = 0.005108 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.829743 B = 5480.406915 C = 6471.375458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.065 0.935 4 C 0.029 3.971 5 N -0.545 5.545 6 C 0.327 3.673 7 N -0.376 5.376 8 N -0.330 5.330 9 C 0.371 3.629 10 C -0.438 4.438 11 H 0.098 0.902 12 C 0.076 3.924 13 N -0.734 5.734 14 Si 0.929 3.071 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.259 1.259 18 N -0.513 5.513 19 C 0.099 3.901 20 C 0.464 3.536 21 S -0.711 6.711 22 C 0.016 3.984 23 C 0.069 3.931 24 O -0.384 6.384 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.286 0.714 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 1.885 -2.477 5.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.083 0.917 4 C -0.099 4.099 5 N -0.273 5.273 6 C 0.115 3.885 7 N -0.162 5.162 8 N -0.162 5.162 9 C 0.122 3.878 10 C -0.480 4.480 11 H 0.116 0.884 12 C -0.151 4.151 13 N -0.358 5.358 14 Si 0.752 3.248 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.182 1.182 18 N -0.214 5.214 19 C -0.044 4.044 20 C 0.094 3.906 21 S -0.587 6.587 22 C -0.113 4.113 23 C -0.008 4.008 24 O -0.303 6.303 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.360 2.574 -2.435 6.425 hybrid contribution 1.571 -0.244 0.352 1.628 sum -3.790 2.330 -2.082 4.912 Atomic orbital electron populations 1.21733 0.92954 1.02912 1.02400 1.22089 0.94502 0.95597 0.84493 0.91706 1.22719 0.87157 1.00568 0.99503 1.62451 1.08637 1.53707 1.02475 1.21808 0.74651 0.98789 0.93215 1.49130 1.07681 1.11191 1.48147 1.79478 0.89616 1.11579 1.35514 1.21368 0.95994 0.79206 0.91220 1.18371 0.88672 0.97716 1.43198 0.88387 1.25845 0.99695 0.96463 0.93069 1.69877 1.31027 1.09513 1.25350 0.85947 0.80400 0.79502 0.78992 1.19105 1.19736 1.18239 1.46011 1.04735 1.17195 1.53436 1.21781 0.91082 0.90802 1.00723 1.22949 0.85549 0.91922 0.90143 1.92782 1.67546 1.25522 1.72822 1.23020 1.01362 0.97733 0.89152 1.22637 0.80348 0.99976 0.97813 1.87939 1.21496 1.78395 1.42507 0.91025 0.91736 0.91822 0.93403 0.89715 0.87623 0.90869 0.90252 0.91459 0.89160 0.89609 0.90513 0.90558 0.92916 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.57 37.16 0.36 -1.13 16 2 C 0.09 1.25 3.43 -26.68 -0.09 1.16 16 3 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.03 0.43 4.91 -3.71 -0.02 0.41 16 5 N -0.55 -9.91 4.95 -238.21 -1.18 -11.08 16 6 C 0.33 6.35 6.29 -63.31 -0.40 5.95 16 7 N -0.38 -8.62 3.03 -65.05 -0.20 -8.81 16 8 N -0.33 -8.39 10.80 31.21 0.34 -8.05 16 9 C 0.37 9.02 7.49 -155.27 -1.16 7.85 16 10 C -0.44 -10.07 8.94 -38.20 -0.34 -10.41 16 11 H 0.10 2.02 7.21 -52.49 -0.38 1.64 16 12 C 0.08 1.70 5.49 -17.32 -0.10 1.61 16 13 N -0.73 -17.63 11.93 55.55 0.66 -16.97 16 14 Si 0.93 16.39 29.56 -169.99 -5.03 11.37 16 15 H -0.27 -4.70 7.11 56.52 0.40 -4.29 16 16 H -0.27 -4.78 7.11 56.52 0.40 -4.37 16 17 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 18 N -0.51 -11.42 3.17 -124.66 -0.39 -11.81 16 19 C 0.10 1.73 10.63 59.85 0.64 2.37 16 20 C 0.46 10.76 6.13 -86.93 -0.53 10.23 16 21 S -0.71 -16.88 27.29 -107.50 -2.93 -19.82 16 22 C 0.02 0.30 4.31 -3.71 -0.02 0.28 16 23 C 0.07 1.14 7.01 37.21 0.26 1.40 16 24 O -0.38 -6.19 10.47 -35.23 -0.37 -6.56 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 31 H 0.07 1.41 7.57 -51.93 -0.39 1.02 16 32 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.55 7.62 -51.93 -0.40 1.16 16 35 H 0.09 1.31 7.39 -51.93 -0.38 0.93 16 36 H 0.08 1.71 6.13 -51.93 -0.32 1.39 16 37 H 0.08 1.59 6.65 -51.93 -0.35 1.25 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -29.68 328.98 -11.12 -40.80 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.58 Total: 6.26 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: -1.40 Total: 19.72 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.77 Total: -56.73 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.37 Total: -6.56 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.37 kcal Atomic # 16 Polarization: -16.88 SS G_CDS: -2.93 Total: -19.82 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.68 -11.12 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794615779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.348 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds