Wall clock time and date at job start Tue Mar 31 2020 04:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48505 * 109.47074 * 269.99953 * 3 2 1 5 5 H 1.48493 * 109.47349 * 30.00069 * 3 2 1 6 6 H 1.48498 * 109.46747 * 150.00211 * 3 2 1 7 7 C 1.37877 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99667 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00497 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47543 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47406 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47263 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46917 * 180.02562 * 12 11 10 14 14 O 1.20820 * 120.00166 * 359.97438 * 13 12 11 15 15 O 1.34226 * 119.99571 * 180.02562 * 13 12 11 16 16 C 1.45201 * 116.99943 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47234 * 180.02562 * 16 15 13 18 18 O 1.21227 * 120.00041 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99776 * 180.02562 * 17 16 15 20 20 C 1.47057 * 125.40825 * 180.02562 * 19 17 16 21 21 C 1.54105 * 103.99235 * 179.97438 * 20 19 17 22 22 N 1.47394 * 103.70056 * 0.10684 * 21 20 19 23 23 C 1.33947 * 109.21036 * 359.88525 * 22 21 20 24 24 O 1.21536 * 123.04157 * 180.09266 * 23 22 21 25 25 H 0.96995 * 120.00194 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47113 * 59.99162 * 9 7 2 27 27 H 1.09009 * 109.47095 * 299.99602 * 9 7 2 28 28 H 1.09003 * 109.47383 * 59.99593 * 10 9 7 29 29 H 1.08999 * 109.46774 * 300.00086 * 10 9 7 30 30 H 1.09003 * 109.46946 * 59.99614 * 11 10 9 31 31 H 1.08998 * 109.46971 * 300.00147 * 11 10 9 32 32 H 1.08998 * 109.46322 * 60.00269 * 12 11 10 33 33 H 1.08999 * 109.46778 * 300.00067 * 12 11 10 34 34 H 1.09004 * 109.47097 * 59.99683 * 16 15 13 35 35 H 1.09001 * 109.47561 * 300.00207 * 16 15 13 36 36 H 1.09002 * 110.54831 * 298.59337 * 20 19 17 37 37 H 1.08997 * 110.54826 * 61.25812 * 20 19 17 38 38 H 1.08996 * 110.55034 * 118.66113 * 21 20 19 39 39 H 1.09001 * 110.54910 * 241.47819 * 21 20 19 40 40 H 0.97000 * 125.37712 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6366 -0.0001 12 6 6.0616 -4.0791 0.0004 13 6 7.5686 -4.0790 0.0010 14 8 8.1727 -3.0327 0.0005 15 8 8.2397 -5.2415 0.0010 16 6 9.6897 -5.1655 0.0010 17 6 10.2657 -6.5581 0.0003 18 8 9.5273 -7.5194 -0.0005 19 7 11.6019 -6.7346 0.0008 20 6 12.2896 -8.0344 -0.0003 21 6 13.7856 -7.6645 0.0001 22 7 13.7807 -6.1906 0.0040 23 6 12.5144 -5.7540 0.0031 24 8 12.2200 -4.5749 0.0042 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6807 0.8905 27 1 3.8753 -0.6797 -0.8896 28 1 3.6586 -3.1503 -0.8903 29 1 3.6579 -3.1505 0.8897 30 1 5.9149 -2.1227 0.8899 31 1 5.9148 -2.1226 -0.8901 32 1 5.6982 -4.5931 -0.8894 33 1 5.6983 -4.5925 0.8906 34 1 10.0257 -4.6333 0.8910 35 1 10.0257 -4.6333 -0.8890 36 1 12.0363 -8.6020 0.8952 37 1 12.0351 -8.6012 -0.8959 38 1 14.2745 -8.0486 0.8953 39 1 14.2740 -8.0450 -0.8970 40 1 14.5698 -5.6264 0.0055 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:51 Heat of formation + Delta-G solvation = -143.854061 kcal Electronic energy + Delta-G solvation = -23115.568924 eV Core-core repulsion = 19317.148447 eV Total energy + Delta-G solvation = -3798.420476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.50681 -40.58120 -39.27308 -37.32745 -36.58821 -35.07278 -34.55485 -32.61681 -30.63833 -30.10845 -28.89950 -26.14649 -24.52575 -23.75742 -22.45567 -20.48969 -20.16353 -20.04315 -18.56596 -17.92592 -17.64389 -17.57390 -16.80922 -16.57706 -16.30049 -15.57746 -15.43787 -15.09835 -14.67605 -14.51453 -14.45698 -14.16232 -13.46279 -13.19777 -13.04989 -12.96378 -12.58454 -12.37486 -12.18657 -11.75187 -11.12858 -11.04818 -10.96006 -10.81535 -10.75321 -10.55179 -10.47559 -10.42848 -9.87049 -9.84787 -9.64692 -9.51166 -9.10931 -8.47484 -5.98492 -3.96052 1.30601 1.36933 2.23216 2.48491 2.50589 3.02986 3.37013 3.44012 3.49741 3.49807 3.83790 4.10559 4.24852 4.51804 4.66585 4.73747 4.75404 4.81702 4.89437 5.01604 5.19274 5.25150 5.36196 5.68000 5.85550 5.99306 6.07082 6.10140 6.24944 6.31979 6.38170 6.65258 6.79152 6.98908 7.14053 7.38769 7.51400 7.59008 7.73907 7.86442 8.60185 9.06645 9.64639 11.14941 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.043302 B = 0.002118 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.463563 B =13219.225493 C =13818.590844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.109 4.109 13 C 0.462 3.538 14 O -0.500 6.500 15 O -0.346 6.346 16 C 0.061 3.939 17 C 0.552 3.448 18 O -0.472 6.472 19 N -0.582 5.582 20 C 0.082 3.918 21 C 0.091 3.909 22 N -0.727 5.727 23 C 0.697 3.303 24 O -0.546 6.546 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.933 -19.782 0.026 38.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.149 4.149 12 C -0.146 4.146 13 C 0.305 3.695 14 O -0.386 6.386 15 O -0.263 6.263 16 C -0.016 4.016 17 C 0.341 3.659 18 O -0.341 6.341 19 N -0.332 5.332 20 C -0.040 4.040 21 C -0.034 4.034 22 N -0.390 5.390 23 C 0.397 3.603 24 O -0.420 6.420 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 32.203 -19.260 0.030 37.523 hybrid contribution 1.067 1.031 -0.023 1.484 sum 33.271 -18.229 0.007 37.937 Atomic orbital electron populations 1.69920 1.06294 1.26814 1.51441 1.25046 0.94744 0.99223 0.94636 0.86770 0.80417 0.83562 0.78521 1.20325 1.21471 1.18915 1.21177 0.89613 0.94427 1.50519 0.91032 1.19581 0.96982 0.92350 0.96383 1.21475 0.91040 1.00138 1.01342 1.21626 0.97822 0.92216 1.03275 1.21601 0.84962 1.02058 1.06015 1.24308 0.92228 0.80870 0.72050 1.90702 1.70351 1.32761 1.44771 1.86532 1.19092 1.35986 1.84706 1.22670 0.79148 0.92791 1.06982 1.20239 0.79373 0.91804 0.74513 1.90793 1.57028 1.42509 1.43775 1.46140 1.06512 1.09885 1.70654 1.22695 0.90075 0.85362 1.05837 1.22593 0.95781 0.80498 1.04505 1.45251 1.06793 1.08273 1.78664 1.15979 0.81992 0.84747 0.77581 1.91099 1.81471 1.14535 1.54913 0.92821 0.96559 0.96990 0.92541 0.92509 0.91453 0.91451 0.87477 0.87484 0.86824 0.86837 0.88053 0.88032 0.88747 0.88749 0.71920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.54 13.96 55.43 0.77 -27.76 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.48 27.47 -169.99 -4.67 17.82 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.02 -0.38 4.04 -27.89 -0.11 -0.50 16 10 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 11 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.11 -1.47 5.81 -27.88 -0.16 -1.63 16 13 C 0.46 6.86 7.96 36.01 0.29 7.14 16 14 O -0.50 -8.77 15.73 -18.75 -0.29 -9.07 16 15 O -0.35 -4.82 9.75 -45.89 -0.45 -5.27 16 16 C 0.06 0.74 4.22 36.01 0.15 0.90 16 17 C 0.55 6.02 7.87 -10.99 -0.09 5.94 16 18 O -0.47 -6.26 16.81 -14.06 -0.24 -6.50 16 19 N -0.58 -4.50 3.00 -120.14 -0.36 -4.86 16 20 C 0.08 0.26 7.20 -3.16 -0.02 0.24 16 21 C 0.09 0.05 8.08 -2.98 -0.02 0.02 16 22 N -0.73 -2.63 6.39 -64.47 -0.41 -3.04 16 23 C 0.70 5.65 8.51 -88.40 -0.75 4.90 16 24 O -0.55 -6.56 15.00 5.33 0.08 -6.48 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 27 H 0.01 0.29 7.57 -51.92 -0.39 -0.10 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.11 1.40 7.56 -51.93 -0.39 1.01 16 35 H 0.11 1.40 7.57 -51.93 -0.39 1.00 16 36 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 39 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 40 H 0.44 0.81 8.96 -40.82 -0.37 0.45 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -38.32 343.85 -7.52 -45.85 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -5.73 Total: -5.04 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.41 Total: -0.82 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.00 Total: -35.67 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.90 Total: -27.32 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -38.32 -7.52 -45.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.009 kcal (2) G-P(sol) polarization free energy of solvation -38.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds