Wall clock time and date at job start Tue Mar 31 2020 04:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48505 * 109.47074 * 269.99953 * 3 2 1 5 5 H 1.48493 * 109.47349 * 30.00069 * 3 2 1 6 6 H 1.48498 * 109.46747 * 150.00211 * 3 2 1 7 7 C 1.37877 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99667 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00497 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47543 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47406 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47263 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46917 * 180.02562 * 12 11 10 14 14 O 1.20820 * 120.00166 * 359.97438 * 13 12 11 15 15 O 1.34226 * 119.99571 * 180.02562 * 13 12 11 16 16 C 1.45201 * 116.99943 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47234 * 180.02562 * 16 15 13 18 18 O 1.21227 * 120.00041 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99776 * 180.02562 * 17 16 15 20 20 C 1.47057 * 125.40825 * 180.02562 * 19 17 16 21 21 C 1.54105 * 103.99235 * 179.97438 * 20 19 17 22 22 N 1.47394 * 103.70056 * 0.10684 * 21 20 19 23 23 C 1.33947 * 109.21036 * 359.88525 * 22 21 20 24 24 O 1.21536 * 123.04157 * 180.09266 * 23 22 21 25 25 H 0.96995 * 120.00194 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47113 * 59.99162 * 9 7 2 27 27 H 1.09009 * 109.47095 * 299.99602 * 9 7 2 28 28 H 1.09003 * 109.47383 * 59.99593 * 10 9 7 29 29 H 1.08999 * 109.46774 * 300.00086 * 10 9 7 30 30 H 1.09003 * 109.46946 * 59.99614 * 11 10 9 31 31 H 1.08998 * 109.46971 * 300.00147 * 11 10 9 32 32 H 1.08998 * 109.46322 * 60.00269 * 12 11 10 33 33 H 1.08999 * 109.46778 * 300.00067 * 12 11 10 34 34 H 1.09004 * 109.47097 * 59.99683 * 16 15 13 35 35 H 1.09001 * 109.47561 * 300.00207 * 16 15 13 36 36 H 1.09002 * 110.54831 * 298.59337 * 20 19 17 37 37 H 1.08997 * 110.54826 * 61.25812 * 20 19 17 38 38 H 1.08996 * 110.55034 * 118.66113 * 21 20 19 39 39 H 1.09001 * 110.54910 * 241.47819 * 21 20 19 40 40 H 0.97000 * 125.37712 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6366 -0.0001 12 6 6.0616 -4.0791 0.0004 13 6 7.5686 -4.0790 0.0010 14 8 8.1727 -3.0327 0.0005 15 8 8.2397 -5.2415 0.0010 16 6 9.6897 -5.1655 0.0010 17 6 10.2657 -6.5581 0.0003 18 8 9.5273 -7.5194 -0.0005 19 7 11.6019 -6.7346 0.0008 20 6 12.2896 -8.0344 -0.0003 21 6 13.7856 -7.6645 0.0001 22 7 13.7807 -6.1906 0.0040 23 6 12.5144 -5.7540 0.0031 24 8 12.2200 -4.5749 0.0042 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6807 0.8905 27 1 3.8753 -0.6797 -0.8896 28 1 3.6586 -3.1503 -0.8903 29 1 3.6579 -3.1505 0.8897 30 1 5.9149 -2.1227 0.8899 31 1 5.9148 -2.1226 -0.8901 32 1 5.6982 -4.5931 -0.8894 33 1 5.6983 -4.5925 0.8906 34 1 10.0257 -4.6333 0.8910 35 1 10.0257 -4.6333 -0.8890 36 1 12.0363 -8.6020 0.8952 37 1 12.0351 -8.6012 -0.8959 38 1 14.2745 -8.0486 0.8953 39 1 14.2740 -8.0450 -0.8970 40 1 14.5698 -5.6264 0.0055 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805697910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:49 Heat of formation + Delta-G solvation = -171.220773 kcal Electronic energy + Delta-G solvation = -23116.755633 eV Core-core repulsion = 19317.148447 eV Total energy + Delta-G solvation = -3799.607186 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -43.09375 -41.69060 -40.12004 -38.04270 -37.63697 -36.66806 -35.11933 -34.65065 -32.18127 -30.84632 -29.67220 -27.77712 -25.31121 -24.21641 -23.88496 -21.95486 -21.53625 -20.85228 -19.20026 -18.89176 -18.56337 -18.56214 -18.36260 -17.76084 -17.23640 -16.43938 -16.36781 -16.13647 -15.75232 -15.72924 -15.20839 -15.04088 -14.78446 -14.57195 -14.11325 -13.82840 -13.77898 -13.49676 -13.33713 -13.33000 -12.87868 -12.37987 -12.14371 -12.04462 -11.82836 -11.77025 -11.74945 -11.65531 -11.38390 -11.32561 -11.23687 -11.07956 -10.74875 -10.15616 -8.28445 -6.31578 0.50428 0.69239 1.07377 1.35940 1.37418 1.50145 1.64263 1.86812 2.36919 2.54082 3.06903 3.08181 3.38590 3.61795 3.83740 3.83784 3.92975 4.03206 4.04474 4.09307 4.48546 4.51186 4.60215 4.69866 4.73374 4.80884 4.83339 5.09253 5.09816 5.19131 5.24686 5.30127 5.60133 5.63385 5.65678 5.69333 5.88612 6.30723 6.39529 6.59124 6.76666 7.07902 7.33036 8.88123 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.043302 B = 0.002118 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.463563 B =13219.225493 C =13818.590844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.017 4.017 10 C -0.095 4.095 11 C -0.102 4.102 12 C -0.103 4.103 13 C 0.468 3.532 14 O -0.532 6.532 15 O -0.347 6.347 16 C 0.059 3.941 17 C 0.559 3.441 18 O -0.500 6.500 19 N -0.580 5.580 20 C 0.071 3.929 21 C 0.097 3.903 22 N -0.709 5.709 23 C 0.688 3.312 24 O -0.593 6.593 25 H 0.266 0.734 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.886 -20.857 0.002 41.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.140 4.140 12 C -0.140 4.140 13 C 0.313 3.687 14 O -0.421 6.421 15 O -0.264 6.264 16 C -0.018 4.018 17 C 0.348 3.652 18 O -0.372 6.372 19 N -0.329 5.329 20 C -0.049 4.049 21 C -0.026 4.026 22 N -0.372 5.372 23 C 0.388 3.612 24 O -0.471 6.471 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 35.240 -20.400 0.005 40.719 hybrid contribution 0.190 1.241 -0.016 1.256 sum 35.430 -19.158 -0.011 40.278 Atomic orbital electron populations 1.70065 1.08154 1.28059 1.52915 1.26016 0.95641 1.03471 0.94336 0.85675 0.79411 0.78515 0.79163 1.19232 1.20854 1.17429 1.21549 0.92168 0.93208 1.49914 0.94500 1.19581 0.93853 0.95715 0.96340 1.21330 0.93098 0.97011 1.01775 1.21413 0.95406 0.94424 1.02738 1.21541 0.84029 1.00203 1.08189 1.24476 0.92662 0.80553 0.71046 1.90694 1.71094 1.33833 1.46438 1.86517 1.20120 1.35423 1.84310 1.22753 0.78161 0.94215 1.06638 1.19884 0.80469 0.90632 0.74260 1.90775 1.58012 1.42868 1.45495 1.46044 1.05487 1.11836 1.69517 1.23141 0.91311 0.83509 1.06973 1.22916 0.94114 0.78137 1.07436 1.45285 1.05325 1.10075 1.76520 1.16242 0.83244 0.84092 0.77606 1.91064 1.82385 1.16536 1.57158 0.92553 0.96545 0.96636 0.92135 0.92155 0.92099 0.92013 0.85269 0.85299 0.87273 0.87278 0.87037 0.87015 0.85850 0.85854 0.70784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 2 C 0.00 0.11 5.47 84.65 0.46 0.58 16 3 Si 0.95 46.17 27.47 68.60 1.88 48.05 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.25 -11.53 6.54 99.48 0.65 -10.88 16 7 C -0.53 -31.41 9.66 25.60 0.25 -31.16 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 10 C -0.09 -3.62 5.15 30.59 0.16 -3.46 16 11 C -0.10 -3.27 4.50 30.59 0.14 -3.13 16 12 C -0.10 -2.57 5.81 29.85 0.17 -2.40 16 13 C 0.47 13.53 7.96 71.24 0.57 14.09 16 14 O -0.53 -18.63 15.73 21.98 0.35 -18.29 16 15 O -0.35 -9.53 9.75 -45.03 -0.44 -9.97 16 16 C 0.06 1.47 4.22 71.24 0.30 1.77 16 17 C 0.56 12.08 7.87 87.66 0.69 12.77 16 18 O -0.50 -13.05 16.81 15.94 0.27 -12.78 16 19 N -0.58 -8.39 3.00 -771.18 -2.32 -10.70 16 20 C 0.07 0.28 7.20 86.65 0.62 0.90 16 21 C 0.10 -0.26 8.08 86.58 0.70 0.44 16 22 N -0.71 -3.49 6.39 -476.64 -3.04 -6.53 16 23 C 0.69 10.57 8.51 179.57 1.53 12.09 16 24 O -0.59 -14.51 15.00 -3.83 -0.06 -14.57 16 25 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 26 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 27 H 0.02 0.73 7.57 -2.38 -0.02 0.71 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 31 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 32 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.11 2.79 7.56 -2.38 -0.02 2.78 16 35 H 0.11 2.79 7.57 -2.39 -0.02 2.77 16 36 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H 0.45 0.64 8.96 -92.71 -0.83 -0.19 16 Total: -1.00 -85.20 343.85 2.83 -82.37 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 0.17 Total: 1.40 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.71 Total: 1.75 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -5.06 Total: -77.97 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: 0.12 Total: -55.61 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.88 Total: 48.05 kcal Total: -85.20 2.83 -82.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.850 kcal (2) G-P(sol) polarization free energy of solvation -85.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds