Wall clock time and date at job start Tue Mar 31 2020 04:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 O 1.45194 * 109.47339 * 120.00075 * 2 1 3 5 5 C 1.34222 * 117.00395 * 269.99953 * 4 2 1 6 6 O 1.20824 * 120.00026 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00440 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47425 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47119 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00053 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99922 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99772 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00063 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47388 * 89.99393 * 13 11 9 15 15 H 1.48502 * 109.47060 * 209.99756 * 13 11 9 16 16 H 1.48508 * 109.46830 * 329.99433 * 13 11 9 17 17 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 18 18 O 1.21233 * 120.00022 * 244.99923 * 17 2 1 19 19 N 1.34772 * 120.00061 * 64.99492 * 17 2 1 20 20 C 1.34774 * 120.00058 * 180.02562 * 19 17 2 21 21 O 1.21538 * 119.99827 * 0.02562 * 20 19 17 22 22 N 1.34782 * 120.00308 * 180.02562 * 20 19 17 23 23 C 1.46496 * 119.99920 * 180.02562 * 22 20 19 24 24 C 1.53008 * 117.49450 * 223.61649 * 23 22 20 25 25 C 1.53004 * 59.99960 * 252.51469 * 24 23 22 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09003 * 109.46996 * 300.00174 * 7 5 4 30 30 H 1.09000 * 109.47049 * 60.00458 * 7 5 4 31 31 H 1.09003 * 109.46975 * 299.99941 * 8 7 5 32 32 H 1.08998 * 109.47082 * 59.99593 * 8 7 5 33 33 H 0.97000 * 119.99598 * 179.97438 * 12 11 9 34 34 H 0.97003 * 120.00213 * 0.02562 * 19 17 2 35 35 H 0.97003 * 119.99273 * 359.97438 * 22 20 19 36 36 H 1.08990 * 115.55319 * 9.32897 * 23 22 20 37 37 H 1.08991 * 117.49942 * 0.02562 * 24 23 22 38 38 H 1.09003 * 117.49474 * 145.02250 * 24 23 22 39 39 H 1.09001 * 117.49398 * 252.51285 * 25 24 23 40 40 H 1.08992 * 117.51533 * 107.48665 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0639 2.2810 6 8 1.9974 1.2516 2.2506 7 6 2.7183 -0.5773 3.5494 8 6 2.8625 0.4887 4.6374 9 6 3.3642 -0.1525 5.9055 10 1 3.5603 -1.2141 5.9329 11 6 3.5720 0.6161 7.0312 12 7 3.3328 1.9089 6.9980 13 14 4.1946 -0.1785 8.6029 14 1 5.6793 -0.1543 8.6153 15 1 3.6775 0.5719 9.7754 16 1 3.7219 -1.5848 8.6674 17 6 2.0324 -0.7103 -1.2306 18 8 2.6528 -1.7462 -1.1217 19 7 1.7919 -0.1941 -2.4520 20 6 2.2407 -0.8296 -3.5525 21 8 2.8619 -1.8685 -3.4434 22 7 2.0006 -0.3131 -4.7741 23 6 2.4881 -1.0042 -5.9703 24 6 3.1328 -0.1518 -7.0652 25 6 1.7434 -0.7541 -7.2833 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 2.0088 -1.3370 3.8773 30 1 3.6872 -1.0409 3.3639 31 1 3.5718 1.2487 4.3097 32 1 1.8935 0.9520 4.8228 33 1 3.4787 2.4496 7.7900 34 1 1.2957 0.6349 -2.5392 35 1 1.5045 0.5159 -4.8611 36 1 2.8941 -2.0019 -5.8041 37 1 3.1947 0.9230 -6.8952 38 1 3.9635 -0.5887 -7.6194 39 1 1.6600 -1.5874 -7.9811 40 1 0.8907 -0.0758 -7.2570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617951.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:34 Heat of formation + Delta-G solvation = -154.389081 kcal Electronic energy + Delta-G solvation = -23273.170640 eV Core-core repulsion = 19474.293331 eV Total energy + Delta-G solvation = -3798.877309 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.57284 -41.59852 -39.91907 -38.12179 -37.59252 -36.05514 -35.65446 -33.88568 -33.32030 -32.55377 -28.11915 -26.65478 -24.91139 -23.61090 -23.25245 -22.26722 -21.76347 -21.45388 -20.33671 -19.26681 -18.42891 -18.22908 -17.53084 -17.43675 -17.11063 -16.90836 -16.48145 -15.95955 -15.67636 -15.39509 -15.29148 -14.82132 -14.43578 -14.28047 -13.90749 -13.70089 -13.46385 -13.25721 -12.86528 -12.80464 -12.61368 -12.51802 -12.36922 -12.15180 -12.04258 -11.96448 -11.76089 -11.50439 -11.47361 -11.45807 -11.29195 -10.88929 -10.57131 -9.85505 -8.20145 -6.33073 0.72741 0.76467 1.16279 1.43735 1.45475 1.56509 1.72299 1.97458 2.43021 2.64723 2.99091 3.13738 3.31535 3.64812 3.77177 3.78492 3.86262 4.05254 4.07173 4.38942 4.42820 4.57153 4.58381 4.60913 4.79612 4.87245 4.88319 5.04551 5.05140 5.19573 5.23021 5.31312 5.44582 5.47417 5.55950 5.80688 6.13798 6.35186 6.70256 6.84547 6.86695 7.20021 7.36704 8.92219 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.042829 B = 0.002211 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.612976 B =12659.030815 C =12839.170122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.064 3.936 3 H 0.128 0.872 4 O -0.344 6.344 5 C 0.472 3.528 6 O -0.528 6.528 7 C -0.097 4.097 8 C 0.041 3.959 9 C -0.546 4.546 10 H 0.074 0.926 11 C -0.002 4.002 12 N -0.933 5.933 13 Si 0.972 3.028 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.259 1.259 17 C 0.529 3.471 18 O -0.499 6.499 19 N -0.663 5.663 20 C 0.696 3.304 21 O -0.585 6.585 22 N -0.684 5.684 23 C 0.061 3.939 24 C -0.184 4.184 25 C -0.164 4.164 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.109 0.891 31 H -0.007 1.007 32 H -0.003 1.003 33 H 0.264 0.736 34 H 0.437 0.563 35 H 0.421 0.579 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.499 -0.665 -29.562 30.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.006 3.994 3 H 0.146 0.854 4 O -0.261 6.261 5 C 0.316 3.684 6 O -0.416 6.416 7 C -0.135 4.135 8 C 0.004 3.996 9 C -0.584 4.584 10 H 0.092 0.908 11 C -0.200 4.200 12 N -0.572 5.572 13 Si 0.796 3.204 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.183 1.183 17 C 0.315 3.685 18 O -0.368 6.368 19 N -0.333 5.333 20 C 0.397 3.603 21 O -0.460 6.460 22 N -0.340 5.340 23 C -0.046 4.046 24 C -0.223 4.223 25 C -0.202 4.202 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.011 0.989 32 H 0.016 0.984 33 H 0.073 0.927 34 H 0.277 0.723 35 H 0.260 0.740 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.642 -1.733 -29.315 30.345 hybrid contribution -0.002 0.873 0.835 1.208 sum -7.644 -0.860 -28.481 29.501 Atomic orbital electron populations 1.22234 0.88568 1.04747 1.06211 1.22684 0.98345 0.97564 0.80829 0.85413 1.86678 1.77399 1.42135 1.19868 1.24476 0.72951 0.85766 0.85163 1.90611 1.49031 1.17716 1.84263 1.21558 1.03661 1.00698 0.87553 1.18793 0.95864 0.92993 0.91969 1.21636 1.44705 0.95626 0.96430 0.90835 1.26042 0.95568 0.95329 1.03035 1.70138 1.49628 1.06766 1.30691 0.85343 0.78492 0.78828 0.77732 1.19893 1.20905 1.18255 1.20652 0.78700 0.84798 0.84359 1.90865 1.36348 1.23347 1.86266 1.43622 1.56063 1.28990 1.04588 1.16204 0.79643 0.83164 0.81325 1.91061 1.44236 1.24900 1.85824 1.44337 1.59093 1.28324 1.02209 1.21561 1.05039 0.97751 0.80203 1.23551 0.97359 1.00597 1.00789 1.23514 0.96045 1.04227 0.96460 0.90698 0.90851 0.85713 0.86571 0.87279 0.98890 0.98410 0.92697 0.72257 0.73999 0.86841 0.87183 0.87573 0.86956 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.50 71.98 0.68 -1.99 16 2 C 0.06 1.57 2.97 29.85 0.09 1.66 16 3 H 0.13 2.82 7.16 -2.39 -0.02 2.81 16 4 O -0.34 -11.68 9.42 -45.00 -0.42 -12.11 16 5 C 0.47 18.29 7.93 71.24 0.56 18.86 16 6 O -0.53 -22.62 15.20 21.97 0.33 -22.28 16 7 C -0.10 -4.02 5.75 29.85 0.17 -3.85 16 8 C 0.04 2.21 4.26 29.85 0.13 2.33 16 9 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 10 H 0.07 3.84 7.74 -2.91 -0.02 3.81 16 11 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 12 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 13 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 17 C 0.53 13.94 7.12 87.66 0.62 14.56 16 18 O -0.50 -19.35 14.91 26.71 0.40 -18.96 16 19 N -0.66 -10.85 5.20 -440.53 -2.29 -13.14 16 20 C 0.70 14.96 8.50 179.05 1.52 16.49 16 21 O -0.59 -20.20 14.31 18.93 0.27 -19.93 16 22 N -0.68 -7.79 5.57 -457.86 -2.55 -10.34 16 23 C 0.06 0.74 6.43 45.00 0.29 1.03 16 24 C -0.18 -1.32 10.46 30.60 0.32 -1.00 16 25 C -0.16 -0.89 10.46 30.60 0.32 -0.57 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.12 0.84 7.93 -2.38 -0.02 0.82 16 29 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 30 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 31 H -0.01 -0.44 8.10 -2.39 -0.02 -0.46 16 32 H 0.00 -0.15 8.10 -2.39 -0.02 -0.17 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.44 2.01 8.49 -92.71 -0.79 1.23 16 35 H 0.42 1.07 8.84 -92.71 -0.82 0.25 16 36 H 0.11 2.06 7.40 -2.39 -0.02 2.04 16 37 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -88.98 353.91 2.93 -86.05 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -0.53 Total: 4.34 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 5.41 Total: 17.40 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -4.56 Total: -80.59 kcal Atomic # 8 Polarization: -73.86 SS G_CDS: 0.58 Total: -73.28 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -88.98 2.93 -86.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617951.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.342 kcal (2) G-P(sol) polarization free energy of solvation -88.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds