Wall clock time and date at job start Tue Mar 31 2020 04:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46966 * 2 1 4 4 O 1.21277 * 119.99810 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99998 * 179.97438 * 3 2 1 6 6 C 1.47018 * 125.64599 * 359.96118 * 5 3 2 7 7 C 1.54328 * 107.27040 * 181.09420 * 6 5 3 8 8 C 1.55154 * 102.94017 * 22.19284 * 7 6 5 9 9 H 1.08996 * 111.03857 * 82.58436 * 8 7 6 10 10 C 1.50701 * 111.00359 * 206.42805 * 8 7 6 11 11 O 1.21287 * 120.00408 * 112.19175 * 10 8 7 12 12 N 1.34783 * 119.99420 * 292.19609 * 10 8 7 13 13 C 1.37104 * 119.99543 * 179.72615 * 12 10 8 14 14 H 1.07996 * 119.99780 * 322.39062 * 13 12 10 15 15 C 1.38955 * 119.99850 * 142.39232 * 13 12 10 16 16 N 1.31409 * 119.99620 * 153.51176 * 15 13 12 17 17 Si 1.86799 * 120.00060 * 333.51356 * 15 13 12 18 18 H 1.48503 * 109.47035 * 95.70830 * 17 15 13 19 19 H 1.48493 * 109.47224 * 215.71098 * 17 15 13 20 20 H 1.48506 * 109.46954 * 335.71270 * 17 15 13 21 21 C 1.46500 * 120.00374 * 359.97438 * 12 10 8 22 22 C 1.50700 * 109.46865 * 95.64696 * 21 12 10 23 23 O 1.20824 * 120.00101 * 0.02562 * 22 21 12 24 24 O 1.34230 * 119.99606 * 180.02562 * 22 21 12 25 25 C 1.47419 * 125.64954 * 179.97438 * 5 3 2 26 26 H 1.09002 * 109.47547 * 300.00278 * 1 2 3 27 27 H 1.09001 * 109.47524 * 60.00104 * 1 2 3 28 28 H 1.09006 * 109.47458 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47060 * 239.99925 * 2 1 3 30 30 H 1.08999 * 109.46828 * 120.00162 * 2 1 3 31 31 H 1.08997 * 109.88436 * 300.51188 * 6 5 3 32 32 H 1.09003 * 109.88736 * 61.52037 * 6 5 3 33 33 H 1.08995 * 110.71744 * 263.82687 * 7 6 5 34 34 H 1.09005 * 110.71736 * 140.55509 * 7 6 5 35 35 H 0.97006 * 119.99358 * 179.97438 * 16 15 13 36 36 H 1.08999 * 109.47024 * 215.65057 * 21 12 10 37 37 H 1.09007 * 109.46758 * 335.64846 * 21 12 10 38 38 H 0.96698 * 116.99996 * 180.02562 * 24 22 21 39 39 H 1.09004 * 110.36224 * 36.99864 * 25 5 3 40 40 H 1.09001 * 110.36855 * 274.67577 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.4181 0.6492 0.0019 7 6 5.7689 1.3950 0.0302 8 6 5.3883 2.7811 0.6142 9 1 5.3383 2.7468 1.7025 10 6 6.3519 3.8443 0.1537 11 8 5.9770 4.7170 -0.6006 12 7 7.6304 3.8253 0.5800 13 6 8.5085 4.7893 0.1566 14 1 8.4605 5.1552 -0.8584 15 6 9.4603 5.2954 1.0333 16 7 10.5868 5.7867 0.5681 17 14 9.1385 5.2775 2.8733 18 1 9.7642 4.0718 3.4735 19 1 9.7211 6.4964 3.4897 20 1 7.6743 5.2498 3.1195 21 6 8.0831 2.7714 1.4913 22 6 8.7237 1.6619 0.6977 23 8 8.7951 1.7434 -0.5057 24 8 9.2148 0.5832 1.3277 25 6 3.9832 3.0019 0.0001 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.3247 0.0177 0.8854 32 1 4.3476 0.0390 -0.8986 33 1 6.1733 1.4985 -0.9766 34 1 6.4781 0.8837 0.6812 35 1 11.2511 6.1404 1.1802 36 1 8.8098 3.1838 2.1913 37 1 7.2299 2.3774 2.0435 38 1 9.6166 -0.1021 0.7764 39 1 3.4049 3.6922 0.6143 40 1 4.0693 3.3802 -1.0186 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828558754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:07 Heat of formation + Delta-G solvation = -140.532458 kcal Electronic energy + Delta-G solvation = -25367.183701 eV Core-core repulsion = 21568.907260 eV Total energy + Delta-G solvation = -3798.276441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.52167 -39.79691 -38.72740 -36.97885 -35.78229 -34.87383 -33.03303 -32.39273 -31.42023 -29.11350 -28.14306 -26.11922 -24.55380 -22.73392 -21.89366 -21.70529 -19.17307 -18.79284 -17.82594 -17.42757 -17.25530 -17.01235 -16.26764 -15.93279 -15.60568 -15.21801 -14.97711 -14.53548 -14.13488 -13.84968 -13.49748 -13.25031 -12.94239 -12.79553 -12.67438 -12.52000 -12.39572 -12.37227 -11.96677 -11.81845 -11.65783 -11.35265 -11.16065 -11.09305 -10.97424 -10.80799 -10.67937 -10.17505 -10.07469 -9.84963 -9.22887 -8.77134 -8.59491 -8.02510 -6.54374 -4.09260 2.61610 2.63087 2.88066 2.92246 3.05360 3.14978 3.16183 3.63242 3.99027 4.17960 4.33307 4.48405 4.73148 4.81015 4.87743 4.93138 4.96216 5.18295 5.20522 5.27792 5.37180 5.43641 5.50702 5.58914 5.61802 5.70760 5.74818 5.80806 5.95143 6.03270 6.09971 6.17880 6.32329 6.82746 7.32911 7.49872 8.11527 8.14829 8.26109 8.34915 8.79232 9.13277 9.51454 10.57285 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.004576 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.871481 B = 6116.931256 C = 6719.346588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.542 6.542 5 N -0.621 5.621 6 C 0.104 3.896 7 C -0.124 4.124 8 C -0.128 4.128 9 H 0.102 0.898 10 C 0.488 3.512 11 O -0.542 6.542 12 N -0.445 5.445 13 C -0.316 4.316 14 H 0.109 0.891 15 C 0.063 3.937 16 N -0.847 5.847 17 Si 0.854 3.146 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.258 1.258 21 C 0.098 3.902 22 C 0.456 3.544 23 O -0.484 6.484 24 O -0.528 6.528 25 C 0.128 3.872 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.276 0.724 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.401 0.599 39 H 0.082 0.918 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -16.290 4.778 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.419 6.419 5 N -0.356 5.356 6 C -0.019 4.019 7 C -0.163 4.163 8 C -0.150 4.150 9 H 0.120 0.880 10 C 0.276 3.724 11 O -0.421 6.421 12 N -0.167 5.167 13 C -0.443 4.443 14 H 0.126 0.874 15 C -0.144 4.144 16 N -0.481 5.481 17 Si 0.679 3.321 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.181 1.181 21 C -0.029 4.029 22 C 0.295 3.705 23 O -0.368 6.368 24 O -0.340 6.340 25 C 0.006 3.994 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.259 0.741 39 H 0.101 0.899 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.807 -14.894 4.282 18.340 hybrid contribution 0.722 -0.535 0.750 1.171 sum -9.084 -15.429 5.032 18.599 Atomic orbital electron populations 1.21535 0.93067 1.01419 1.03419 1.21612 0.98445 0.93695 1.04173 1.20434 0.80303 0.91883 0.76037 1.90709 1.54285 1.46790 1.50122 1.48616 1.05136 1.08492 1.73327 1.22050 0.86837 0.91267 1.01787 1.22787 0.95948 0.94086 1.03435 1.22534 0.95574 0.95387 1.01520 0.88042 1.19754 0.81854 0.86309 0.84486 1.90603 1.76456 1.38457 1.36617 1.43318 1.07951 1.21737 1.43693 1.18984 1.09995 1.16241 0.99076 0.87387 1.25350 0.94502 0.96056 0.98500 1.69826 1.04476 1.37450 1.36388 0.87293 0.80243 0.78266 0.86258 1.19793 1.20419 1.18146 1.21591 1.00696 0.87170 0.93393 1.24438 0.75995 0.81916 0.88186 1.90729 1.52802 1.77486 1.15782 1.84576 1.72007 1.31186 1.46279 1.22015 0.90683 0.83939 1.02765 0.91990 0.91962 0.92159 0.89045 0.89057 0.91119 0.91053 0.89099 0.90174 0.91365 0.87513 0.87592 0.74094 0.89929 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.20 37.16 0.34 -0.88 16 2 C -0.14 -1.25 5.61 -27.88 -0.16 -1.41 16 3 C 0.52 7.20 7.85 -10.98 -0.09 7.12 16 4 O -0.54 -9.64 16.24 5.56 0.09 -9.55 16 5 N -0.62 -8.38 3.33 -170.51 -0.57 -8.95 16 6 C 0.10 1.08 6.49 -3.06 -0.02 1.06 16 7 C -0.12 -1.64 4.86 -24.90 -0.12 -1.76 16 8 C -0.13 -2.04 2.41 -89.61 -0.22 -2.26 16 9 H 0.10 1.39 7.26 -51.93 -0.38 1.01 16 10 C 0.49 10.70 7.00 -10.98 -0.08 10.63 16 11 O -0.54 -14.06 15.59 5.55 0.09 -13.97 16 12 N -0.45 -10.18 1.69 -116.09 -0.20 -10.38 16 13 C -0.32 -8.67 9.12 -14.93 -0.14 -8.81 16 14 H 0.11 3.40 7.91 -52.49 -0.42 2.99 16 15 C 0.06 1.68 5.26 -17.47 -0.09 1.59 16 16 N -0.85 -23.73 13.96 55.50 0.77 -22.95 16 17 Si 0.85 18.81 25.35 -169.99 -4.31 14.50 16 18 H -0.27 -5.45 6.65 56.52 0.38 -5.07 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 21 C 0.10 1.80 4.54 -5.19 -0.02 1.77 16 22 C 0.46 7.97 6.04 36.01 0.22 8.19 16 23 O -0.48 -10.15 16.60 -18.75 -0.31 -10.46 16 24 O -0.53 -6.86 13.42 -39.26 -0.53 -7.39 16 25 C 0.13 2.10 6.03 -2.52 -0.02 2.08 16 26 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 27 H 0.06 0.63 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.41 7.87 -51.93 -0.41 1.00 16 34 H 0.08 0.93 5.71 -51.93 -0.30 0.63 16 35 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.11 2.07 3.42 -51.93 -0.18 1.89 16 37 H 0.11 1.49 5.67 -51.93 -0.29 1.20 16 38 H 0.40 3.42 9.10 45.56 0.41 3.84 16 39 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 40 H 0.09 1.59 7.40 -51.93 -0.38 1.21 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -35.33 329.04 -4.86 -40.18 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.47 Total: 6.68 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: -0.38 Total: 17.32 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.01 Total: -42.28 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.66 Total: -41.37 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.31 Total: 14.50 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.33 -4.86 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828558754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.348 kcal (2) G-P(sol) polarization free energy of solvation -35.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds