Wall clock time and date at job start Tue Mar 31 2020 04:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48499 * 109.46970 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46870 * 300.00041 * 3 2 1 6 6 H 1.48494 * 109.47036 * 60.00219 * 3 2 1 7 7 C 1.37878 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00323 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47194 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99879 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00158 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00102 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.47091 * 179.97438 * 13 11 10 15 15 C 1.34238 * 116.99990 * 179.97438 * 14 13 11 16 16 O 1.20827 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99956 * 179.97438 * 15 14 13 18 18 N 1.46501 * 109.46760 * 179.97438 * 17 15 14 19 19 C 1.45761 * 117.94292 * 270.01768 * 18 17 15 20 20 C 1.52922 * 110.48247 * 160.92674 * 19 18 17 21 21 C 1.53171 * 108.62996 * 50.75086 * 20 19 18 22 22 C 1.53068 * 108.51490 * 292.41118 * 21 20 19 23 23 C 1.33347 * 117.95032 * 89.99985 * 18 17 15 24 24 O 1.21279 * 118.24209 * 2.22334 * 23 18 17 25 25 H 0.97004 * 119.99950 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46797 * 60.00358 * 9 7 2 27 27 H 1.09005 * 109.47130 * 300.00597 * 9 7 2 28 28 H 0.96994 * 120.00541 * 359.97438 * 10 9 7 29 29 H 1.08993 * 109.47208 * 59.99119 * 13 11 10 30 30 H 1.09002 * 109.46915 * 299.98996 * 13 11 10 31 31 H 1.09000 * 109.47119 * 60.00029 * 17 15 14 32 32 H 1.09001 * 109.46895 * 299.99701 * 17 15 14 33 33 H 1.08995 * 109.30192 * 281.23610 * 19 18 17 34 34 H 1.09001 * 109.30141 * 40.82582 * 19 18 17 35 35 H 1.09003 * 109.60066 * 170.50695 * 20 19 18 36 36 H 1.08997 * 109.60766 * 290.83137 * 20 19 18 37 37 H 1.08998 * 109.57211 * 172.68289 * 21 20 19 38 38 H 1.09005 * 109.69025 * 52.21233 * 21 20 19 39 39 H 1.09002 * 109.40169 * 288.84451 * 22 21 20 40 40 H 1.09003 * 109.40095 * 169.01967 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5611 -5.1050 -0.0011 13 6 2.7328 -6.0289 -0.0005 14 8 2.0067 -7.2863 -0.0006 15 6 2.7378 -8.4121 -0.0007 16 8 3.9444 -8.3489 -0.0011 17 6 2.0535 -9.7548 -0.0002 18 7 3.0625 -10.8170 -0.0010 19 6 3.5322 -11.3119 -1.2890 20 6 4.8682 -12.0385 -1.1282 21 6 4.7327 -13.0681 -0.0022 22 6 4.5576 -12.3202 1.3218 23 6 3.4938 -11.2702 1.1766 24 8 3.0003 -10.8100 2.1843 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8897 28 1 3.1565 -3.4356 -0.0009 29 1 3.3588 -5.9712 0.8898 30 1 3.3600 -5.9711 -0.8901 31 1 1.4304 -9.8454 -0.8899 32 1 1.4311 -9.8451 0.8901 33 1 2.7948 -12.0007 -1.7010 34 1 3.6622 -10.4723 -1.9719 35 1 5.1232 -12.5453 -2.0589 36 1 5.6479 -11.3193 -0.8779 37 1 5.6314 -13.6834 0.0400 38 1 3.8633 -13.6998 -0.1848 39 1 5.4995 -11.8458 1.5970 40 1 4.2665 -13.0255 2.1003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915453296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:39 Heat of formation + Delta-G solvation = -186.337755 kcal Electronic energy + Delta-G solvation = -23553.684532 eV Core-core repulsion = 19753.421824 eV Total energy + Delta-G solvation = -3800.262708 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.16952 -41.22091 -40.31169 -37.78876 -37.42705 -36.21125 -35.15695 -34.44022 -31.19868 -30.66366 -29.52855 -28.16194 -25.41724 -24.69668 -23.58425 -22.18267 -21.68787 -19.66789 -19.34693 -18.98955 -18.14752 -18.10555 -17.51161 -17.39178 -17.25534 -16.91337 -16.33098 -16.23274 -15.75658 -15.20672 -14.97074 -14.68399 -14.62711 -14.38786 -14.26718 -14.07670 -13.78595 -13.69545 -13.21715 -12.93133 -12.76951 -12.74342 -12.27061 -12.24053 -12.00616 -11.97314 -11.85447 -11.71317 -11.48738 -10.97068 -10.84778 -10.81866 -9.99204 -9.96241 -8.31240 -6.47869 0.93807 1.02128 1.43267 1.44031 1.51046 1.57358 1.61136 1.91166 2.33584 2.56112 3.04021 3.51868 3.54982 3.70464 3.82657 3.90148 3.93315 3.98589 3.99226 4.10324 4.30175 4.49967 4.54646 4.59088 4.85413 4.93414 5.03783 5.06738 5.11545 5.17373 5.19654 5.23063 5.38658 5.39345 5.60556 5.80202 6.29075 6.47721 6.60923 6.74684 6.99501 7.17964 7.32514 8.81128 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.041278 B = 0.002285 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.162557 B =12251.125069 C =12384.361360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.500 3.500 12 O -0.582 6.582 13 C 0.062 3.938 14 O -0.346 6.346 15 C 0.447 3.553 16 O -0.525 6.525 17 C 0.115 3.885 18 N -0.586 5.586 19 C 0.103 3.897 20 C -0.134 4.134 21 C -0.116 4.116 22 C -0.130 4.130 23 C 0.511 3.489 24 O -0.602 6.602 25 H 0.269 0.731 26 H -0.005 1.005 27 H -0.009 1.009 28 H 0.412 0.588 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.164 0.836 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.882 -28.127 -4.980 31.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.462 6.462 13 C -0.015 4.015 14 O -0.261 6.261 15 C 0.290 3.710 16 O -0.413 6.413 17 C -0.010 4.010 18 N -0.318 5.318 19 C -0.018 4.018 20 C -0.172 4.172 21 C -0.153 4.153 22 C -0.169 4.169 23 C 0.302 3.698 24 O -0.484 6.484 25 H 0.078 0.922 26 H 0.012 0.988 27 H 0.009 0.991 28 H 0.248 0.752 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.181 0.819 32 H 0.141 0.859 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.027 -27.908 -4.488 30.719 hybrid contribution 0.357 1.531 0.260 1.593 sum 12.384 -26.377 -4.228 29.445 Atomic orbital electron populations 1.70138 1.08234 1.28593 1.49842 1.26067 0.95809 1.03912 0.93839 0.85088 0.79045 0.77260 0.77679 1.17681 1.20373 1.20535 1.21630 0.94403 0.90367 1.53008 0.89636 1.18649 0.88574 0.83777 0.94647 1.46048 1.11736 1.04727 1.72495 1.20654 0.89270 0.84692 0.76821 1.90686 1.18827 1.85293 1.51431 1.22704 0.92639 0.79384 1.06804 1.86559 1.41368 1.14488 1.83703 1.25038 0.86940 0.87516 0.71516 1.90634 1.16347 1.87973 1.46380 1.21130 0.91169 0.79547 1.09148 1.47254 1.41421 1.35190 1.07913 1.21852 0.97921 0.99735 0.82250 1.21883 0.95561 0.98335 1.01424 1.21643 1.04659 0.97597 0.91420 1.21714 0.96899 0.96288 1.02020 1.21085 0.83222 0.83436 0.82076 1.90725 1.58781 1.61341 1.37563 0.92172 0.98751 0.99058 0.75153 0.86724 0.85532 0.81908 0.85884 0.88125 0.90500 0.86836 0.92159 0.88351 0.89854 0.87969 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 2 C 0.00 0.19 5.46 84.66 0.46 0.66 16 3 Si 0.99 42.16 29.54 68.60 2.03 44.19 16 4 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.56 -30.02 9.28 25.60 0.24 -29.78 16 8 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.52 5.43 85.63 0.46 14.98 16 10 N -0.70 -29.45 5.55 -466.78 -2.59 -32.04 16 11 C 0.50 20.57 7.91 87.66 0.69 21.26 16 12 O -0.58 -29.77 16.50 15.75 0.26 -29.51 16 13 C 0.06 1.87 5.94 71.24 0.42 2.29 16 14 O -0.35 -10.96 9.75 -45.14 -0.44 -11.40 16 15 C 0.45 12.06 8.01 71.24 0.57 12.63 16 16 O -0.52 -15.82 16.17 21.96 0.36 -15.46 16 17 C 0.12 2.23 5.81 85.63 0.50 2.73 16 18 N -0.59 -10.16 2.30 -830.98 -1.92 -12.08 16 19 C 0.10 0.94 6.32 86.49 0.55 1.49 16 20 C -0.13 -0.86 6.02 30.63 0.18 -0.67 16 21 C -0.12 -0.65 6.02 30.67 0.18 -0.47 16 22 C -0.13 -1.65 6.04 29.71 0.18 -1.47 16 23 C 0.51 11.05 7.44 87.71 0.65 11.70 16 24 O -0.60 -19.04 16.18 -3.03 -0.05 -19.09 16 25 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 26 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H -0.01 -0.53 8.14 -2.38 -0.02 -0.54 16 28 H 0.41 14.06 8.32 -92.71 -0.77 13.28 16 29 H 0.11 3.09 8.13 -2.39 -0.02 3.08 16 30 H 0.13 3.09 8.13 -2.39 -0.02 3.07 16 31 H 0.16 1.83 8.01 -2.39 -0.02 1.81 16 32 H 0.12 2.71 7.14 -2.39 -0.02 2.69 16 33 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.08 0.75 8.11 -2.39 -0.02 0.73 16 35 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 37 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.08 0.33 8.13 -2.38 -0.02 0.31 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -83.93 347.27 3.32 -80.62 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.29 Total: 14.93 kcal Atomic # 6 Polarization: 30.26 SS G_CDS: 5.10 Total: 35.36 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -4.22 Total: -99.63 kcal Atomic # 8 Polarization: -75.59 SS G_CDS: 0.13 Total: -75.47 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -83.93 3.32 -80.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915453296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.720 kcal (2) G-P(sol) polarization free energy of solvation -83.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds