Wall clock time and date at job start Tue Mar 31 2020 04:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47087 * 2 1 4 4 C 1.53005 * 110.53662 * 302.83049 * 3 2 1 5 5 N 1.47317 * 110.73273 * 65.74951 * 3 2 1 6 6 C 1.34527 * 106.61743 * 118.36451 * 5 3 2 7 7 O 1.21543 * 123.76692 * 180.21290 * 6 5 3 8 8 N 1.33785 * 112.45916 * 0.38882 * 6 5 3 9 9 C 1.46506 * 124.17905 * 179.86371 * 8 6 5 10 10 C 1.50699 * 109.46928 * 269.69824 * 9 8 6 11 11 O 1.20828 * 120.00000 * 359.97438 * 10 9 8 12 12 O 1.34231 * 120.00154 * 179.97438 * 10 9 8 13 13 C 1.45196 * 117.00262 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47008 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46883 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99960 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99808 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99753 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00018 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47131 * 90.00023 * 19 17 15 21 21 H 1.48507 * 109.47134 * 209.99789 * 19 17 15 22 22 H 1.48499 * 109.47326 * 330.00072 * 19 17 15 23 23 C 1.34763 * 111.64706 * 359.59325 * 8 6 5 24 24 O 1.21241 * 127.16090 * 180.19739 * 23 8 6 25 25 H 1.08996 * 109.47190 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46994 * 300.00189 * 1 2 3 27 27 H 1.09001 * 109.47241 * 60.00046 * 1 2 3 28 28 H 1.08997 * 109.46983 * 240.00368 * 2 1 3 29 29 H 1.08996 * 109.46799 * 120.00120 * 2 1 3 30 30 H 1.08996 * 109.46900 * 297.86791 * 4 3 2 31 31 H 1.09003 * 109.46812 * 57.87372 * 4 3 2 32 32 H 1.09003 * 109.46870 * 177.86920 * 4 3 2 33 33 H 0.97002 * 126.68715 * 298.62637 * 5 3 2 34 34 H 1.09004 * 109.47073 * 29.69652 * 9 8 6 35 35 H 1.09000 * 109.47212 * 149.69734 * 9 8 6 36 36 H 1.09001 * 109.46943 * 300.00501 * 13 12 10 37 37 H 1.09003 * 109.46752 * 60.00304 * 13 12 10 38 38 H 1.09001 * 109.47677 * 300.00050 * 14 13 12 39 39 H 1.09003 * 109.47116 * 60.00527 * 14 13 12 40 40 H 0.97003 * 119.99855 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4865 2.2074 -1.2040 5 7 1.6803 2.1227 1.2562 6 6 2.8363 2.4660 1.8525 7 8 2.9003 3.0451 2.9192 8 7 3.9075 2.1021 1.1383 9 6 5.2923 2.3517 1.5464 10 6 5.7434 3.6834 1.0042 11 8 4.9861 4.3549 0.3443 12 8 6.9866 4.1237 1.2544 13 6 7.3527 5.4147 0.7002 14 6 8.7955 5.7453 1.0874 15 6 9.1757 7.0851 0.5115 16 1 8.4597 7.6449 -0.0718 17 6 10.4377 7.5960 0.7295 18 7 10.7693 8.7655 0.2274 19 14 11.6762 6.6273 1.7379 20 1 12.4604 5.7412 0.8405 21 1 12.5938 7.5672 2.4308 22 1 10.9593 5.8033 2.7440 23 6 3.5556 1.4724 0.0001 24 8 4.2969 1.0236 -0.8479 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8388 1.7410 -2.1239 31 1 0.3970 2.1850 -1.1791 32 1 1.8296 3.2414 -1.1664 33 1 0.7846 2.2873 1.5902 34 1 5.3540 2.3626 2.6346 35 1 5.9345 1.5632 1.1539 36 1 7.2668 5.3814 -0.3859 37 1 6.6856 6.1816 1.0941 38 1 8.8819 5.7785 2.1734 39 1 9.4623 4.9784 0.6931 40 1 11.6570 9.1251 0.3810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916610070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:49 Heat of formation + Delta-G solvation = -133.578141 kcal Electronic energy + Delta-G solvation = -24389.877732 eV Core-core repulsion = 20591.902852 eV Total energy + Delta-G solvation = -3797.974879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.95168 -40.06575 -38.92709 -37.37771 -36.44677 -35.56468 -33.35365 -33.06080 -30.90796 -29.89527 -29.22788 -26.04089 -25.15217 -23.76695 -22.37335 -20.98827 -20.69495 -20.36341 -18.29441 -18.03924 -17.06242 -16.83567 -16.38441 -16.25474 -16.12005 -15.98809 -15.44262 -15.16359 -14.46277 -14.44804 -14.21731 -13.86617 -13.61099 -13.12502 -13.06484 -12.70561 -12.56423 -12.47540 -12.46315 -11.94562 -11.53159 -11.50434 -11.32703 -11.12795 -10.88749 -10.72291 -10.47527 -10.39529 -9.97438 -9.90117 -9.77141 -9.74200 -9.35835 -8.62676 -6.13250 -4.14699 1.31010 1.68534 2.32158 2.56869 2.72636 3.14644 3.28231 3.35569 3.39992 3.51453 3.97249 4.19048 4.38494 4.57560 4.64209 4.73483 4.80383 4.93175 4.97830 5.03664 5.14591 5.20243 5.23275 5.33209 5.38967 5.39926 5.57547 5.73094 5.91463 5.94061 6.41520 6.42627 6.67784 6.68327 7.02352 7.14413 7.20134 7.60830 7.79471 7.96572 8.38912 8.88083 9.46009 10.99277 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.034689 B = 0.002881 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.979910 B = 9714.833838 C = 9802.065813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.124 3.876 4 C -0.151 4.151 5 N -0.717 5.717 6 C 0.709 3.291 7 O -0.536 6.536 8 N -0.564 5.564 9 C 0.125 3.875 10 C 0.445 3.555 11 O -0.505 6.505 12 O -0.355 6.355 13 C 0.084 3.916 14 C -0.009 4.009 15 C -0.528 4.528 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.882 3.118 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.263 1.263 23 C 0.535 3.465 24 O -0.457 6.457 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.439 0.561 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.025 0.975 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.753 -21.185 0.709 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C 0.034 3.966 4 C -0.209 4.209 5 N -0.382 5.382 6 C 0.410 3.590 7 O -0.409 6.409 8 N -0.311 5.311 9 C 0.002 3.998 10 C 0.286 3.714 11 O -0.393 6.393 12 O -0.271 6.271 13 C 0.011 3.989 14 C -0.047 4.047 15 C -0.566 4.566 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.709 3.291 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.187 1.187 23 C 0.321 3.679 24 O -0.324 6.324 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.284 0.716 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.043 0.957 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.226 -20.716 0.610 29.666 hybrid contribution 0.369 -0.012 0.521 0.638 sum -20.857 -20.728 1.131 29.427 Atomic orbital electron populations 1.21814 0.93960 1.02797 1.02452 1.21752 0.97647 0.91898 1.04336 1.21495 0.91605 0.96053 0.87468 1.22079 1.02401 1.01021 0.95431 1.45591 1.07842 1.62325 1.22437 1.15758 0.81011 0.78820 0.83442 1.91047 1.85268 1.43952 1.20600 1.45944 1.07676 1.54669 1.22820 1.21031 0.79951 0.94796 1.03998 1.23530 0.81419 0.88214 0.78279 1.90663 1.54679 1.57262 1.36745 1.86457 1.29943 1.40216 1.70466 1.23458 0.99129 0.78278 0.98004 1.19640 0.89275 0.97709 0.98040 1.20828 0.99747 1.01628 1.34392 0.90668 1.24940 0.98045 0.94810 0.95228 1.69899 1.20865 1.17767 1.44928 0.86738 0.81248 0.80113 0.81036 1.20033 1.21155 1.18705 1.20832 0.90796 0.75984 0.80271 1.90820 1.59151 1.44418 1.38056 0.91602 0.92419 0.91590 0.89074 0.90631 0.89677 0.89855 0.90793 0.71580 0.84218 0.84435 0.91575 0.91518 0.95242 0.95693 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.41 37.16 0.35 -0.13 16 2 C -0.12 -0.59 5.30 -26.73 -0.14 -0.73 16 3 C 0.12 0.94 1.01 -132.09 -0.13 0.81 16 4 C -0.15 -1.00 8.61 37.16 0.32 -0.68 16 5 N -0.72 -5.78 5.62 -52.93 -0.30 -6.07 16 6 C 0.71 8.72 8.62 -88.03 -0.76 7.96 16 7 O -0.54 -8.41 17.48 5.33 0.09 -8.31 16 8 N -0.56 -6.91 2.09 -122.02 -0.26 -7.17 16 9 C 0.13 1.53 6.29 -5.19 -0.03 1.50 16 10 C 0.44 7.67 8.03 36.01 0.29 7.96 16 11 O -0.51 -10.13 16.18 -18.75 -0.30 -10.44 16 12 O -0.36 -6.75 10.22 -39.26 -0.40 -7.16 16 13 C 0.08 1.83 5.40 37.16 0.20 2.03 16 14 C -0.01 -0.22 4.42 -27.88 -0.12 -0.35 16 15 C -0.53 -15.16 9.66 -34.44 -0.33 -15.49 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 19 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 23 C 0.53 6.09 6.98 -10.55 -0.07 6.01 16 24 O -0.46 -6.21 17.76 5.59 0.10 -6.11 16 25 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.06 0.16 7.41 -51.93 -0.38 -0.23 16 27 H 0.07 0.17 6.42 -51.93 -0.33 -0.16 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.34 6.37 -51.93 -0.33 0.01 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.44 2.41 8.41 -40.82 -0.34 2.07 16 34 H 0.14 1.44 7.85 -51.93 -0.41 1.03 16 35 H 0.14 1.32 8.00 -51.93 -0.42 0.91 16 36 H 0.07 1.45 8.13 -51.93 -0.42 1.03 16 37 H 0.07 1.48 8.13 -51.93 -0.42 1.05 16 38 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 39 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -36.19 343.26 -5.85 -42.04 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.53 Total: -2.95 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -0.54 Total: 10.89 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.22 Total: -40.00 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.51 Total: -32.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.19 -5.85 -42.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916610070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.534 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds