Wall clock time and date at job start Tue Mar 31 2020 04:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47087 * 2 1 4 4 C 1.53005 * 110.53662 * 302.83049 * 3 2 1 5 5 N 1.47317 * 110.73273 * 65.74951 * 3 2 1 6 6 C 1.34527 * 106.61743 * 118.36451 * 5 3 2 7 7 O 1.21543 * 123.76692 * 180.21290 * 6 5 3 8 8 N 1.33785 * 112.45916 * 0.38882 * 6 5 3 9 9 C 1.46506 * 124.17905 * 179.86371 * 8 6 5 10 10 C 1.50699 * 109.46928 * 269.69824 * 9 8 6 11 11 O 1.20828 * 120.00000 * 359.97438 * 10 9 8 12 12 O 1.34231 * 120.00154 * 179.97438 * 10 9 8 13 13 C 1.45196 * 117.00262 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47008 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46883 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99960 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99808 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99753 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00018 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47131 * 90.00023 * 19 17 15 21 21 H 1.48507 * 109.47134 * 209.99789 * 19 17 15 22 22 H 1.48499 * 109.47326 * 330.00072 * 19 17 15 23 23 C 1.34763 * 111.64706 * 359.59325 * 8 6 5 24 24 O 1.21241 * 127.16090 * 180.19739 * 23 8 6 25 25 H 1.08996 * 109.47190 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46994 * 300.00189 * 1 2 3 27 27 H 1.09001 * 109.47241 * 60.00046 * 1 2 3 28 28 H 1.08997 * 109.46983 * 240.00368 * 2 1 3 29 29 H 1.08996 * 109.46799 * 120.00120 * 2 1 3 30 30 H 1.08996 * 109.46900 * 297.86791 * 4 3 2 31 31 H 1.09003 * 109.46812 * 57.87372 * 4 3 2 32 32 H 1.09003 * 109.46870 * 177.86920 * 4 3 2 33 33 H 0.97002 * 126.68715 * 298.62637 * 5 3 2 34 34 H 1.09004 * 109.47073 * 29.69652 * 9 8 6 35 35 H 1.09000 * 109.47212 * 149.69734 * 9 8 6 36 36 H 1.09001 * 109.46943 * 300.00501 * 13 12 10 37 37 H 1.09003 * 109.46752 * 60.00304 * 13 12 10 38 38 H 1.09001 * 109.47677 * 300.00050 * 14 13 12 39 39 H 1.09003 * 109.47116 * 60.00527 * 14 13 12 40 40 H 0.97003 * 119.99855 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4865 2.2074 -1.2040 5 7 1.6803 2.1227 1.2562 6 6 2.8363 2.4660 1.8525 7 8 2.9003 3.0451 2.9192 8 7 3.9075 2.1021 1.1383 9 6 5.2923 2.3517 1.5464 10 6 5.7434 3.6834 1.0042 11 8 4.9861 4.3549 0.3443 12 8 6.9866 4.1237 1.2544 13 6 7.3527 5.4147 0.7002 14 6 8.7955 5.7453 1.0874 15 6 9.1757 7.0851 0.5115 16 1 8.4597 7.6449 -0.0718 17 6 10.4377 7.5960 0.7295 18 7 10.7693 8.7655 0.2274 19 14 11.6762 6.6273 1.7379 20 1 12.4604 5.7412 0.8405 21 1 12.5938 7.5672 2.4308 22 1 10.9593 5.8033 2.7440 23 6 3.5556 1.4724 0.0001 24 8 4.2969 1.0236 -0.8479 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8388 1.7410 -2.1239 31 1 0.3970 2.1850 -1.1791 32 1 1.8296 3.2414 -1.1664 33 1 0.7846 2.2873 1.5902 34 1 5.3540 2.3626 2.6346 35 1 5.9345 1.5632 1.1539 36 1 7.2668 5.3814 -0.3859 37 1 6.6856 6.1816 1.0941 38 1 8.8819 5.7785 2.1734 39 1 9.4623 4.9784 0.6931 40 1 11.6570 9.1251 0.3810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916610070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:48 Heat of formation + Delta-G solvation = -159.378729 kcal Electronic energy + Delta-G solvation = -24390.996529 eV Core-core repulsion = 20591.902852 eV Total energy + Delta-G solvation = -3799.093677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.83071 -41.52505 -39.89650 -38.27034 -37.84432 -36.60333 -35.43924 -33.73740 -32.87468 -30.53453 -30.22642 -27.27708 -26.46605 -24.53992 -23.60741 -22.59046 -21.68769 -21.45235 -19.50431 -19.18493 -18.78748 -18.00309 -17.80783 -17.47344 -17.21021 -16.78434 -16.44534 -16.30173 -15.95976 -15.46065 -15.39747 -15.06622 -14.83775 -14.34040 -14.13192 -13.78769 -13.66758 -13.26434 -13.20202 -13.11220 -13.00361 -12.57378 -12.52494 -12.38287 -12.10010 -11.98909 -11.83518 -11.83193 -11.58996 -11.52072 -11.27535 -11.12824 -10.83038 -10.57805 -8.36334 -6.45153 0.41470 0.74262 0.93817 1.37725 1.39664 1.47995 1.52581 1.94959 2.02855 2.33371 2.74086 2.98496 3.39337 3.44024 3.63605 3.75316 4.02925 4.09430 4.10741 4.12343 4.29058 4.34427 4.43340 4.55715 4.56209 4.71076 4.81936 4.95474 5.01135 5.10997 5.20027 5.24870 5.38753 5.44884 5.48391 5.70114 5.80398 6.12574 6.16029 6.47759 6.60679 6.94815 7.19927 8.79810 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.034689 B = 0.002881 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.979910 B = 9714.833838 C = 9802.065813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C 0.131 3.869 4 C -0.150 4.150 5 N -0.695 5.695 6 C 0.704 3.296 7 O -0.575 6.575 8 N -0.571 5.571 9 C 0.129 3.871 10 C 0.441 3.559 11 O -0.538 6.538 12 O -0.351 6.351 13 C 0.094 3.906 14 C -0.003 4.003 15 C -0.545 4.545 16 H 0.033 0.967 17 C 0.011 3.989 18 N -0.944 5.944 19 Si 0.956 3.044 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.242 1.242 23 C 0.527 3.473 24 O -0.482 6.482 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.048 0.952 33 H 0.453 0.547 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.594 -24.047 1.597 33.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C 0.041 3.959 4 C -0.208 4.208 5 N -0.361 5.361 6 C 0.404 3.596 7 O -0.451 6.451 8 N -0.317 5.317 9 C 0.006 3.994 10 C 0.283 3.717 11 O -0.428 6.428 12 O -0.267 6.267 13 C 0.021 3.979 14 C -0.040 4.040 15 C -0.583 4.583 16 H 0.051 0.949 17 C -0.187 4.187 18 N -0.584 5.584 19 Si 0.778 3.222 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.166 1.166 23 C 0.315 3.685 24 O -0.352 6.352 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.067 0.933 33 H 0.300 0.700 34 H 0.181 0.819 35 H 0.186 0.814 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.132 -23.611 1.481 32.396 hybrid contribution 0.523 0.908 0.153 1.059 sum -21.608 -22.703 1.633 31.385 Atomic orbital electron populations 1.21837 0.92110 1.03704 1.03199 1.21778 0.99081 0.89497 1.04649 1.21670 0.88951 0.97961 0.87331 1.22127 1.04379 0.99230 0.95017 1.45544 1.07437 1.61068 1.22011 1.15946 0.81880 0.78616 0.83133 1.91019 1.85881 1.45877 1.22315 1.46113 1.07709 1.54598 1.23287 1.21285 0.80664 0.92216 1.05195 1.24612 0.80197 0.89472 0.77380 1.90650 1.55221 1.58605 1.38354 1.86440 1.31331 1.38553 1.70337 1.23001 0.97769 0.79659 0.97466 1.19476 0.90861 0.95590 0.98105 1.21100 0.99410 1.03448 1.34302 0.94858 1.25983 1.00380 0.95867 0.96462 1.70047 1.21834 1.19841 1.46645 0.85576 0.78230 0.78762 0.79640 1.18653 1.20590 1.16572 1.21518 0.92452 0.75069 0.79451 1.90801 1.60241 1.45502 1.38659 0.90689 0.91831 0.90691 0.88637 0.90553 0.89198 0.86649 0.93291 0.69950 0.81943 0.81442 0.92442 0.92644 0.94386 0.94373 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.41 71.98 0.68 0.24 16 2 C -0.11 -0.82 5.30 30.59 0.16 -0.66 16 3 C 0.13 1.74 1.01 2.98 0.00 1.75 16 4 C -0.15 -1.71 8.61 71.98 0.62 -1.09 16 5 N -0.70 -10.02 5.62 -439.80 -2.47 -12.49 16 6 C 0.70 16.63 8.62 179.44 1.55 18.18 16 7 O -0.58 -17.76 17.48 -3.85 -0.07 -17.83 16 8 N -0.57 -13.39 2.09 -777.19 -1.63 -15.01 16 9 C 0.13 2.97 6.29 85.63 0.54 3.51 16 10 C 0.44 15.01 8.03 71.24 0.57 15.58 16 11 O -0.54 -21.92 16.18 21.96 0.36 -21.56 16 12 O -0.35 -13.09 10.22 -51.43 -0.53 -13.62 16 13 C 0.09 4.17 5.40 71.98 0.39 4.56 16 14 C 0.00 -0.14 4.42 29.85 0.13 -0.01 16 15 C -0.54 -32.03 9.66 25.60 0.25 -31.78 16 16 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 17 C 0.01 0.65 5.47 84.65 0.46 1.12 16 18 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 19 Si 0.96 43.67 27.47 68.60 1.88 45.56 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 23 C 0.53 11.40 6.98 87.94 0.61 12.02 16 24 O -0.48 -12.71 17.76 -2.91 -0.05 -12.76 16 25 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.06 0.13 7.41 -2.39 -0.02 0.11 16 27 H 0.07 0.11 6.42 -2.39 -0.02 0.09 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 0.57 6.37 -2.39 -0.02 0.56 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.45 3.97 8.41 -92.71 -0.78 3.19 16 34 H 0.16 3.03 7.85 -2.38 -0.02 3.01 16 35 H 0.17 2.84 8.00 -2.39 -0.02 2.82 16 36 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 37 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 38 H 0.04 1.77 7.20 -2.39 -0.02 1.75 16 39 H 0.04 1.74 7.57 -2.39 -0.02 1.72 16 40 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -80.76 343.26 4.00 -76.77 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.23 Total: 6.53 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 5.97 Total: 23.41 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -3.80 Total: -86.49 kcal Atomic # 8 Polarization: -65.48 SS G_CDS: -0.29 Total: -65.77 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.56 kcal Total: -80.76 4.00 -76.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916610070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.612 kcal (2) G-P(sol) polarization free energy of solvation -80.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds