Wall clock time and date at job start Tue Mar 31 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47023 * 270.00357 * 3 2 1 5 5 H 1.48496 * 109.46980 * 30.00537 * 3 2 1 6 6 H 1.48505 * 109.47073 * 150.00375 * 3 2 1 7 7 C 1.38815 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00102 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00156 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00432 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.45588 * 84.93424 * 10 9 7 12 12 C 1.53194 * 109.31089 * 181.39161 * 11 10 9 13 13 N 1.46931 * 108.77285 * 305.36060 * 12 11 10 14 14 C 1.34772 * 120.63155 * 233.58970 * 13 12 11 15 15 O 1.21282 * 120.00261 * 355.58710 * 14 13 12 16 16 C 1.50709 * 119.99859 * 175.59160 * 14 13 12 17 17 H 1.08999 * 109.46859 * 16.46885 * 16 14 13 18 18 F 1.39897 * 109.46936 * 256.46916 * 16 14 13 19 19 C 1.53003 * 109.46936 * 136.46950 * 16 14 13 20 20 F 1.39900 * 109.47160 * 60.00263 * 19 16 14 21 21 F 1.39905 * 109.46600 * 179.97438 * 19 16 14 22 22 F 1.39897 * 109.47280 * 299.99755 * 19 16 14 23 23 C 1.46927 * 118.73549 * 53.61345 * 13 12 11 24 24 C 1.53032 * 109.46236 * 205.00447 * 10 9 7 25 25 H 0.96995 * 119.99856 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99641 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.44490 * 324.96874 * 10 9 7 28 28 H 1.08994 * 109.49956 * 61.43703 * 11 10 9 29 29 H 1.09005 * 109.50042 * 301.33555 * 11 10 9 30 30 H 1.09001 * 109.58926 * 185.57698 * 12 11 10 31 31 H 1.08998 * 109.59180 * 65.15212 * 12 11 10 32 32 H 1.08994 * 109.58955 * 66.17865 * 23 13 12 33 33 H 1.09002 * 109.58619 * 186.46394 * 23 13 12 34 34 H 1.08999 * 109.50287 * 58.65976 * 24 10 9 35 35 H 1.09003 * 109.52538 * 298.58249 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 2.4232 -4.0346 1.4368 12 6 3.2189 -5.3437 1.4300 13 7 2.4413 -6.3660 0.7164 14 6 2.1733 -7.5532 1.2953 15 8 2.6417 -7.8173 2.3824 16 6 1.2916 -8.5526 0.5917 17 1 1.2066 -8.2842 -0.4613 18 9 0.0214 -8.5480 1.1780 19 6 1.9049 -9.9489 0.7142 20 9 2.0138 -10.2934 2.0658 21 9 1.0860 -10.8768 0.0616 22 9 3.1750 -9.9536 0.1279 23 6 1.9619 -6.0695 -0.6405 24 6 1.1804 -4.7522 -0.6104 25 1 -0.4850 0.8400 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.9683 -3.5504 -0.5905 28 1 1.5125 -4.1654 2.0212 29 1 3.0289 -3.2432 1.8784 30 1 3.3961 -5.6690 2.4551 31 1 4.1717 -5.1897 0.9235 32 1 2.8121 -5.9746 -1.3158 33 1 1.3117 -6.8748 -0.9824 34 1 0.9013 -4.4715 -1.6260 35 1 0.2810 -4.8765 -0.0073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996617613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:44 Heat of formation + Delta-G solvation = -213.097420 kcal Electronic energy + Delta-G solvation = -25110.942940 eV Core-core repulsion = 20644.202801 eV Total energy + Delta-G solvation = -4466.740139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.63624 -48.73115 -48.02357 -47.83805 -40.34004 -37.70417 -34.77041 -32.48408 -31.73990 -30.56705 -29.32279 -25.52990 -24.54324 -23.01528 -22.76177 -20.81668 -19.72831 -19.21973 -18.90927 -18.47051 -17.75512 -17.20303 -16.68611 -15.92795 -15.28857 -14.97188 -14.90993 -14.74376 -14.70551 -14.50044 -14.41552 -14.10976 -14.06559 -13.99182 -13.73475 -13.63810 -13.18849 -12.95437 -12.66868 -12.34404 -11.74644 -11.70157 -11.08780 -10.98337 -10.91798 -10.58498 -10.40162 -10.21975 -9.91515 -9.77063 -9.00889 -8.86854 -7.07633 -5.85574 -3.15604 1.68356 1.98005 2.48364 3.04728 3.37823 3.39431 3.43492 3.45105 3.47397 3.60321 4.05541 4.42711 4.49734 4.68883 4.98788 5.14378 5.24786 5.33835 5.46475 5.60095 5.70132 5.74599 5.98634 6.06930 6.26274 6.35314 6.37754 6.73449 6.90031 6.98208 7.57523 7.61105 8.32295 9.43957 9.99440 10.33859 11.36798 Molecular weight = 298.10amu Principal moments of inertia in cm(-1) A = 0.038922 B = 0.003281 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.215438 B = 8530.670021 C = 8722.471179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.152 4.152 12 C 0.112 3.888 13 N -0.586 5.586 14 C 0.494 3.506 15 O -0.504 6.504 16 C 0.030 3.970 17 H 0.150 0.850 18 F -0.151 7.151 19 C 0.447 3.553 20 F -0.155 7.155 21 F -0.170 7.170 22 F -0.167 7.167 23 C 0.100 3.900 24 C -0.142 4.142 25 H 0.256 0.744 26 H 0.384 0.616 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -19.262 -2.436 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.193 4.193 12 C -0.009 4.009 13 N -0.319 5.319 14 C 0.276 3.724 15 O -0.378 6.378 16 C -0.011 4.011 17 H 0.167 0.833 18 F -0.132 7.132 19 C 0.392 3.608 20 F -0.136 7.136 21 F -0.151 7.151 22 F -0.149 7.149 23 C -0.023 4.023 24 C -0.181 4.181 25 H 0.066 0.934 26 H 0.218 0.782 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.022 -19.242 -1.833 19.743 hybrid contribution -0.043 0.763 -0.005 0.765 sum 3.978 -18.479 -1.838 18.991 Atomic orbital electron populations 1.69655 1.05163 1.25824 1.57274 1.24754 0.95497 0.97764 1.02682 0.86202 0.78695 0.83801 0.77545 1.21663 1.21745 1.20703 1.19220 0.90998 0.84014 1.43266 0.91095 1.42411 1.05810 0.99625 1.88532 1.20163 0.94439 0.86076 0.92523 1.22724 1.00324 0.94566 1.01701 1.21898 0.93938 0.87297 0.97802 1.48181 1.52748 1.13945 1.16978 1.19931 0.82422 0.83382 0.86621 1.90825 1.50749 1.76475 1.19783 1.22989 0.82312 0.92541 1.03246 0.83276 1.93028 1.37285 1.96773 1.86075 1.20340 0.77100 0.87948 0.75441 1.93309 1.95737 1.93064 1.31511 1.93251 1.72250 1.68346 1.81238 1.93244 1.40763 1.96736 1.84123 1.22085 0.99344 0.98632 0.82238 1.22242 0.99298 0.93610 1.02915 0.93406 0.78203 0.93124 0.92013 0.90146 0.89234 0.90823 0.89776 0.90364 0.89847 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -16.76 5.12 -53.39 -0.27 -17.04 16 10 C 0.18 3.08 2.73 -67.89 -0.19 2.90 16 11 C -0.15 -2.45 5.66 -26.61 -0.15 -2.60 16 12 C 0.11 1.49 6.42 -3.71 -0.02 1.47 16 13 N -0.59 -7.15 2.97 -172.76 -0.51 -7.67 16 14 C 0.49 6.48 6.79 -10.98 -0.07 6.41 16 15 O -0.50 -8.27 15.00 5.56 0.08 -8.18 16 16 C 0.03 0.31 3.40 -27.88 -0.09 0.21 16 17 H 0.15 0.95 5.36 -51.93 -0.28 0.67 16 18 F -0.15 -1.79 17.03 2.25 0.04 -1.75 16 19 C 0.45 4.83 2.85 37.16 0.11 4.93 16 20 F -0.16 -2.05 15.94 2.25 0.04 -2.01 16 21 F -0.17 -1.69 17.30 2.25 0.04 -1.65 16 22 F -0.17 -1.77 17.02 2.25 0.04 -1.73 16 23 C 0.10 0.98 6.32 -3.71 -0.02 0.96 16 24 C -0.14 -1.90 5.55 -26.61 -0.15 -2.04 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.38 9.59 7.80 -40.82 -0.32 9.27 16 27 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.09 1.25 7.03 -51.93 -0.37 0.89 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.54 5.15 -51.93 -0.27 0.27 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -30.94 307.86 -4.78 -35.72 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -3.73 Total: 4.24 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.84 Total: 5.31 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.06 Total: -51.14 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.18 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.15 Total: -7.14 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.94 -4.78 -35.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996617613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.378 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds