Wall clock time and date at job start Tue Mar 31 2020 03:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35632 * 124.93476 * 2 1 4 4 C 1.35464 * 107.13125 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 127.23916 * 179.97438 * 4 3 2 6 6 C 1.41548 * 105.52252 * 0.02562 * 4 3 2 7 7 C 1.47660 * 126.46276 * 179.97438 * 6 4 3 8 8 O 1.21576 * 120.00119 * 359.97438 * 7 6 4 9 9 N 1.34783 * 120.00183 * 179.97438 * 7 6 4 10 10 C 1.46502 * 120.00028 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.84617 * 332.86998 * 10 9 7 12 12 C 1.53776 * 113.61202 * 104.17520 * 10 9 7 13 13 C 1.53785 * 87.08063 * 89.11589 * 12 10 9 14 14 H 1.08996 * 113.61556 * 139.97577 * 13 12 10 15 15 N 1.46496 * 113.69274 * 270.87326 * 13 12 10 16 16 C 1.36938 * 120.00300 * 183.55886 * 15 13 12 17 17 H 1.08000 * 119.99709 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00174 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99801 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99986 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47128 * 60.00584 * 20 18 16 22 22 H 1.48503 * 109.46642 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47065 * 299.99902 * 20 18 16 24 24 C 1.53778 * 113.61260 * 201.67315 * 10 9 7 25 25 N 1.28466 * 124.92715 * 179.70598 * 2 1 3 26 26 H 1.08999 * 109.47268 * 89.98905 * 1 2 3 27 27 H 1.09004 * 109.46468 * 329.99646 * 1 2 3 28 28 H 1.08995 * 109.47263 * 210.00144 * 1 2 3 29 29 H 1.07998 * 126.43983 * 0.04197 * 3 2 1 30 30 H 0.96993 * 119.99550 * 359.97438 * 9 7 6 31 31 H 1.08996 * 113.61538 * 203.66218 * 12 10 9 32 32 H 1.08998 * 113.61777 * 334.56936 * 12 10 9 33 33 H 0.97007 * 119.99802 * 3.55695 * 15 13 12 34 34 H 0.97004 * 120.00166 * 179.97438 * 19 18 16 35 35 H 1.09007 * 113.61573 * 25.43781 * 24 10 9 36 36 H 1.08998 * 113.61327 * 156.33292 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2418 1.1119 0.0000 4 6 3.5315 0.6977 -0.0006 5 17 4.9543 1.6924 -0.0015 6 6 3.4752 -0.7166 -0.0015 7 6 4.6269 -1.6407 -0.0030 8 8 5.7599 -1.2000 -0.0039 9 7 4.4220 -2.9729 -0.0032 10 6 5.5647 -3.8897 -0.0052 11 1 6.4536 -3.4571 -0.4644 12 6 5.8311 -4.5449 1.3603 13 6 4.8668 -5.6609 0.9247 14 1 5.1932 -6.6588 1.2173 15 7 3.4673 -5.3967 1.2677 16 6 2.5084 -6.3385 1.0052 17 1 2.7840 -7.2761 0.5456 18 6 1.1824 -6.0883 1.3307 19 7 0.8467 -4.9458 1.8912 20 14 -0.1257 -7.3727 0.9719 21 1 0.1940 -8.6233 1.7059 22 1 -1.4507 -6.8656 1.4107 23 1 -0.1604 -7.6498 -0.4867 24 6 5.2249 -5.2963 -0.5257 25 7 2.2006 -1.0533 0.0054 26 1 -0.3634 0.0002 -1.0276 27 1 -0.3632 0.8900 0.5139 28 1 -0.3633 -0.8899 0.5138 29 1 1.8968 2.1353 0.0006 30 1 3.5181 -3.3245 -0.0021 31 1 6.8594 -4.8823 1.4895 32 1 5.4676 -3.9587 2.2042 33 1 3.2198 -4.5547 1.6809 34 1 -0.0800 -4.7708 2.1184 35 1 4.3722 -5.3166 -1.2044 36 1 6.0876 -5.8390 -0.9121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022132659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:42 Heat of formation + Delta-G solvation = 59.139734 kcal Electronic energy + Delta-G solvation = -22039.564474 eV Core-core repulsion = 18587.115290 eV Total energy + Delta-G solvation = -3452.449184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.70835 -41.04942 -39.18957 -37.49662 -35.42720 -34.55039 -33.81671 -31.84085 -31.55166 -28.55809 -26.67684 -26.18708 -24.97861 -23.28648 -22.58235 -21.18333 -20.23789 -19.19829 -18.81648 -17.70402 -17.40603 -16.92329 -16.56175 -16.14957 -15.68536 -15.52633 -15.47415 -15.03770 -14.89718 -14.47200 -13.89734 -13.52046 -13.35009 -13.29037 -13.06983 -12.80882 -12.73590 -12.56271 -12.50171 -12.16567 -11.88128 -11.73315 -11.63237 -11.08090 -11.02341 -10.78440 -10.41320 -9.97923 -9.77552 -8.95004 -7.87619 -5.17373 0.43477 0.87283 0.95839 1.50382 1.52291 1.57638 1.73067 2.22133 2.28793 2.59395 3.38265 3.42956 3.68112 3.73385 3.87392 3.91615 4.02724 4.22951 4.32206 4.39775 4.41354 4.46660 4.71198 4.83082 4.88790 4.93381 4.99416 5.08522 5.25560 5.40715 5.55906 5.67847 5.75012 6.33035 6.48050 6.78416 7.17409 7.38746 8.12325 8.36976 9.33936 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.005401 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.275662 B = 5182.600904 C = 6895.811220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.271 5.271 3 C 0.020 3.980 4 C -0.129 4.129 5 Cl -0.016 7.016 6 C -0.038 4.038 7 C 0.594 3.406 8 O -0.554 6.554 9 N -0.691 5.691 10 C 0.122 3.878 11 H 0.100 0.900 12 C -0.149 4.149 13 C 0.144 3.856 14 H 0.058 0.942 15 N -0.720 5.720 16 C -0.244 4.244 17 H 0.075 0.925 18 C -0.065 4.065 19 N -0.957 5.957 20 Si 0.969 3.031 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.281 1.281 24 C -0.160 4.160 25 N -0.259 5.259 26 H 0.108 0.892 27 H 0.141 0.859 28 H 0.086 0.914 29 H 0.241 0.759 30 H 0.411 0.589 31 H 0.124 0.876 32 H 0.047 0.953 33 H 0.373 0.627 34 H 0.250 0.750 35 H 0.053 0.947 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 13.013 -5.205 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.060 5.060 3 C -0.124 4.124 4 C -0.166 4.166 5 Cl 0.013 6.987 6 C -0.197 4.197 7 C 0.379 3.621 8 O -0.431 6.431 9 N -0.342 5.342 10 C 0.017 3.983 11 H 0.118 0.882 12 C -0.188 4.188 13 C 0.034 3.966 14 H 0.076 0.924 15 N -0.360 5.360 16 C -0.376 4.376 17 H 0.093 0.907 18 C -0.258 4.258 19 N -0.606 5.606 20 Si 0.798 3.202 21 H -0.209 1.209 22 H -0.223 1.223 23 H -0.207 1.207 24 C -0.201 4.201 25 N -0.097 5.097 26 H 0.126 0.874 27 H 0.159 0.841 28 H 0.105 0.895 29 H 0.258 0.742 30 H 0.249 0.751 31 H 0.142 0.858 32 H 0.066 0.934 33 H 0.206 0.794 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.210 12.287 -5.242 13.413 hybrid contribution -0.787 0.125 0.173 0.815 sum 0.423 12.412 -5.069 13.414 Atomic orbital electron populations 1.22715 0.69592 1.07326 1.06497 1.45935 1.09495 1.02095 1.48474 1.23300 0.87852 0.95699 1.05535 1.21017 0.90463 0.90111 1.15047 1.98329 1.36400 1.66682 1.97318 1.21908 0.91494 0.93396 1.12940 1.17113 0.86751 0.82019 0.76207 1.90734 1.22787 1.77561 1.52031 1.45870 1.11267 1.04752 1.72290 1.21886 0.88937 0.89542 0.97921 0.88165 1.23710 1.01152 0.97451 0.96508 1.21486 0.84302 0.96795 0.93971 0.92384 1.42359 1.02017 1.18854 1.72797 1.19499 0.88148 0.97331 1.32613 0.90716 1.25445 0.99111 0.99113 1.02131 1.69826 1.17135 1.24796 1.48888 0.85299 0.78473 0.78667 0.77723 1.20917 1.22268 1.20729 1.23962 1.02002 0.94747 0.99405 1.73885 1.02217 1.15425 1.18133 0.87363 0.84115 0.89491 0.74248 0.75073 0.85806 0.93406 0.79393 0.94150 0.92802 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 11.32 127.77 1.45 2.60 16 2 N -0.27 -6.87 3.72 -368.86 -1.37 -8.24 16 3 C 0.02 0.44 11.49 83.46 0.96 1.40 16 4 C -0.13 -3.89 6.80 22.44 0.15 -3.74 16 5 Cl -0.02 -0.45 28.17 -2.72 -0.08 -0.53 16 6 C -0.04 -1.41 7.13 42.45 0.30 -1.10 16 7 C 0.59 24.15 7.82 86.73 0.68 24.83 16 8 O -0.55 -23.59 15.52 -3.95 -0.06 -23.65 16 9 N -0.69 -27.72 4.95 -443.08 -2.19 -29.91 16 10 C 0.12 4.30 4.28 45.51 0.19 4.50 16 11 H 0.10 3.36 7.55 -2.38 -0.02 3.34 16 12 C -0.15 -5.10 7.58 31.12 0.24 -4.86 16 13 C 0.14 5.62 4.53 45.52 0.21 5.83 16 14 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 15 N -0.72 -35.48 4.41 -320.45 -1.41 -36.89 16 16 C -0.24 -13.15 9.99 84.03 0.84 -12.31 16 17 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 19 N -0.96 -55.95 13.06 21.65 0.28 -55.67 16 20 Si 0.97 44.85 29.55 68.60 2.03 46.88 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 C -0.16 -5.43 7.61 31.12 0.24 -5.19 16 25 N -0.26 -9.33 11.66 -48.17 -0.56 -9.90 16 26 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.14 0.85 8.13 -2.38 -0.02 0.83 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.24 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.41 18.35 6.90 -92.71 -0.64 17.71 16 31 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 33 H 0.37 20.06 6.98 -92.70 -0.65 19.41 16 34 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -72.06 327.16 2.20 -69.86 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -0.16 Total: 39.23 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.72 Total: 8.82 kcal Atomic # 7 Polarization: -135.35 SS G_CDS: -5.26 Total: -140.61 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.65 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -72.06 2.20 -69.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022132659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.003 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds