Wall clock time and date at job start Tue Mar 31 2020 03:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34233 * 125.73447 * 2 1 4 4 C 1.38069 * 107.43897 * 179.97438 * 3 2 1 5 5 C 1.47382 * 126.42471 * 179.97438 * 4 3 2 6 6 O 1.21619 * 119.99824 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00357 * 359.97438 * 5 4 3 8 8 C 1.46496 * 120.00099 * 179.97438 * 7 5 4 9 9 H 1.08994 * 112.91109 * 23.75176 * 8 7 5 10 10 C 1.53787 * 113.61210 * 155.00440 * 8 7 5 11 11 C 1.53779 * 87.07963 * 139.97940 * 10 8 7 12 12 H 1.09001 * 113.61377 * 89.20020 * 11 10 8 13 13 N 1.46503 * 113.61085 * 220.01587 * 11 10 8 14 14 C 1.36938 * 119.99807 * 205.00229 * 13 11 10 15 15 H 1.08007 * 120.00307 * 359.97438 * 14 13 11 16 16 C 1.38817 * 120.00012 * 180.02562 * 14 13 11 17 17 N 1.31617 * 119.99783 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99674 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47061 * 90.00055 * 18 16 14 20 20 H 1.48503 * 109.46597 * 210.00084 * 18 16 14 21 21 H 1.48495 * 109.47084 * 329.99710 * 18 16 14 22 22 C 1.53779 * 87.08402 * 334.56577 * 11 10 8 23 23 C 1.41389 * 107.15046 * 0.22379 * 4 3 2 24 24 Cl 1.73605 * 126.00592 * 179.73723 * 23 4 3 25 25 N 1.30535 * 107.99399 * 359.61671 * 23 4 3 26 26 H 1.09005 * 109.46652 * 90.00598 * 1 2 3 27 27 H 1.08997 * 109.47226 * 210.00381 * 1 2 3 28 28 H 1.08998 * 109.47413 * 330.00298 * 1 2 3 29 29 H 1.08002 * 126.28241 * 0.02562 * 3 2 1 30 30 H 0.97002 * 119.99411 * 0.02562 * 7 5 4 31 31 H 1.08997 * 113.61028 * 254.52900 * 10 8 7 32 32 H 1.08998 * 113.61447 * 25.34434 * 10 8 7 33 33 H 0.96998 * 120.00047 * 25.00237 * 13 11 10 34 34 H 0.97006 * 119.99568 * 180.02562 * 17 16 14 35 35 H 1.09002 * 113.61557 * 270.88569 * 22 11 10 36 36 H 1.09004 * 113.61501 * 139.97990 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0896 0.0000 4 6 3.5599 0.6562 0.0006 5 6 4.7630 1.5074 0.0003 6 8 5.8677 0.9988 0.0004 7 7 4.6391 2.8495 -0.0012 8 6 5.8350 3.6955 -0.0009 9 1 6.7125 3.1900 -0.4040 10 6 5.6009 5.0933 -0.5980 11 6 6.4971 5.6377 0.5268 12 1 7.5555 5.6644 0.2675 13 7 6.0196 6.8989 1.0991 14 6 6.9020 7.7541 1.7034 15 1 7.9500 7.4986 1.7585 16 6 6.4495 8.9489 2.2462 17 7 7.2977 9.7711 2.8265 18 14 4.6369 9.3904 2.1515 19 1 3.9367 8.8674 3.3521 20 1 4.4894 10.8671 2.0965 21 1 4.0437 8.7879 0.9308 22 6 6.0919 4.3986 1.3424 23 6 3.5316 -0.7574 -0.0043 24 17 4.9153 -1.8058 -0.0122 25 7 2.2823 -1.1358 0.0007 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9155 2.1169 0.0004 30 1 3.7579 3.2551 -0.0017 31 1 6.0252 5.2192 -1.5940 32 1 4.5654 5.4277 -0.5336 33 1 5.0784 7.1282 1.0500 34 1 6.9814 10.6059 3.2061 35 1 5.1910 4.5437 1.9386 36 1 6.9127 3.9637 1.9129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022963056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:53 Heat of formation + Delta-G solvation = 78.300482 kcal Electronic energy + Delta-G solvation = -20973.655137 eV Core-core repulsion = 17522.036825 eV Total energy + Delta-G solvation = -3451.618311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.82432 -39.62594 -37.87537 -36.92530 -34.18882 -33.66338 -32.81590 -30.98872 -30.21602 -27.52812 -25.22829 -24.81607 -23.22604 -21.89149 -21.27359 -20.31954 -19.62073 -18.14729 -17.40135 -16.52325 -16.28812 -16.07809 -15.45575 -14.84823 -14.64227 -14.44524 -14.15173 -13.78720 -13.56869 -13.35317 -13.10146 -12.72134 -12.24870 -12.05319 -11.96421 -11.85393 -11.77244 -11.06933 -11.03385 -10.79015 -10.44715 -10.29836 -10.17209 -9.80594 -9.75942 -9.59726 -9.16979 -8.95250 -8.74900 -7.30518 -5.80905 -3.16897 1.03092 1.11821 1.63194 2.32187 3.26248 3.31737 3.33006 3.34090 3.40935 3.94369 4.15543 4.54132 4.55689 4.69188 4.83097 4.85185 4.92340 5.06642 5.12758 5.23804 5.40802 5.52329 5.63778 5.75960 6.04128 6.10418 6.18526 6.20580 6.39703 6.55784 6.65112 6.86857 6.96138 7.59907 7.95747 8.31399 8.38696 9.15975 9.88144 10.07551 11.37376 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.003104 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.431131 B = 9019.061215 C = 9956.602222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.350 5.350 3 C 0.109 3.891 4 C -0.272 4.272 5 C 0.589 3.411 6 O -0.529 6.529 7 N -0.713 5.713 8 C 0.122 3.878 9 H 0.114 0.886 10 C -0.162 4.162 11 C 0.174 3.826 12 H 0.089 0.911 13 N -0.735 5.735 14 C -0.248 4.248 15 H 0.092 0.908 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.176 4.176 23 C 0.172 3.828 24 Cl 0.034 6.966 25 N -0.286 5.286 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.193 0.807 30 H 0.394 0.606 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.362 0.638 34 H 0.260 0.740 35 H 0.078 0.922 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -20.378 -8.133 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.130 5.130 3 C -0.042 4.042 4 C -0.288 4.288 5 C 0.375 3.625 6 O -0.405 6.405 7 N -0.363 5.363 8 C 0.018 3.982 9 H 0.132 0.868 10 C -0.202 4.202 11 C 0.062 3.938 12 H 0.107 0.893 13 N -0.374 5.374 14 C -0.378 4.378 15 H 0.110 0.890 16 C -0.191 4.191 17 N -0.580 5.580 18 Si 0.716 3.284 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.218 4.218 23 C -0.021 4.021 24 Cl 0.062 6.938 25 N -0.111 5.111 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.209 0.791 30 H 0.227 0.773 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.864 -21.676 -8.031 28.036 hybrid contribution -1.321 1.231 0.083 1.808 sum -17.185 -20.445 -7.947 27.866 Atomic orbital electron populations 1.22119 0.72520 1.05500 1.04351 1.48193 1.07228 1.03129 1.54413 1.23170 0.89734 0.94151 0.97158 1.20274 0.93593 0.92511 1.22399 1.17107 0.87352 0.81795 0.76278 1.90816 1.26264 1.73652 1.49791 1.45831 1.09796 1.05302 1.75344 1.22472 0.88254 0.88766 0.98754 0.86812 1.23889 1.01513 0.94509 1.00267 1.21344 0.96932 0.84659 0.90842 0.89338 1.42700 1.06969 1.19264 1.68506 1.19160 0.92104 0.97877 1.28669 0.88998 1.24704 0.97154 0.96898 1.00390 1.69704 1.33178 1.11918 1.43165 0.86540 0.86638 0.77631 0.77632 1.21111 1.21708 1.20375 1.24299 1.01936 0.98971 0.96596 1.22700 0.89479 0.90316 0.99621 1.98436 1.34385 1.64556 1.96421 1.77253 1.00153 1.07483 1.26215 0.89746 0.88500 0.88445 0.79063 0.77259 0.91121 0.90318 0.80542 0.93005 0.90385 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.28 11.44 59.85 0.68 0.96 16 2 N -0.35 -2.74 3.98 -67.60 -0.27 -3.01 16 3 C 0.11 0.83 10.99 -16.56 -0.18 0.64 16 4 C -0.27 -3.15 6.13 -105.04 -0.64 -3.79 16 5 C 0.59 8.02 7.81 -12.54 -0.10 7.92 16 6 O -0.53 -9.06 15.32 5.26 0.08 -8.98 16 7 N -0.71 -8.31 5.34 -54.10 -0.29 -8.60 16 8 C 0.12 1.68 4.24 -67.12 -0.28 1.39 16 9 H 0.11 1.67 7.46 -51.93 -0.39 1.28 16 10 C -0.16 -2.26 7.58 -25.92 -0.20 -2.46 16 11 C 0.17 3.15 4.48 -67.12 -0.30 2.85 16 12 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 13 N -0.73 -16.60 5.21 -52.63 -0.27 -16.87 16 14 C -0.25 -6.84 10.45 -15.06 -0.16 -7.00 16 15 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 16 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 17 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 18 Si 0.89 21.37 27.74 -169.99 -4.71 16.66 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 22 C -0.18 -2.85 7.68 -25.92 -0.20 -3.05 16 23 C 0.17 2.17 7.88 -16.90 -0.13 2.04 16 24 Cl 0.03 0.44 28.00 -51.86 -1.45 -1.01 16 25 N -0.29 -3.28 12.50 33.18 0.41 -2.87 16 26 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.10 0.04 8.14 -51.93 -0.42 -0.39 16 29 H 0.19 0.61 7.46 -52.49 -0.39 0.22 16 30 H 0.39 3.36 7.65 -40.82 -0.31 3.05 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.36 7.90 5.79 -40.82 -0.24 7.66 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -35.79 326.74 -6.71 -42.50 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.30 Total: 5.86 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.61 Total: -0.45 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.36 Total: -59.50 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -1.45 Total: -1.01 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.79 -6.71 -42.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022963056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.800 kcal (2) G-P(sol) polarization free energy of solvation -35.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds