Wall clock time and date at job start Tue Mar 31 2020 03:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34233 * 125.73447 * 2 1 4 4 C 1.38069 * 107.43897 * 179.97438 * 3 2 1 5 5 C 1.47382 * 126.42471 * 179.97438 * 4 3 2 6 6 O 1.21619 * 119.99824 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00357 * 359.97438 * 5 4 3 8 8 C 1.46496 * 120.00099 * 179.97438 * 7 5 4 9 9 H 1.08994 * 112.91109 * 23.75176 * 8 7 5 10 10 C 1.53787 * 113.61210 * 155.00440 * 8 7 5 11 11 C 1.53779 * 87.07963 * 139.97940 * 10 8 7 12 12 H 1.09001 * 113.61377 * 89.20020 * 11 10 8 13 13 N 1.46503 * 113.61085 * 220.01587 * 11 10 8 14 14 C 1.36938 * 119.99807 * 205.00229 * 13 11 10 15 15 H 1.08007 * 120.00307 * 359.97438 * 14 13 11 16 16 C 1.38817 * 120.00012 * 180.02562 * 14 13 11 17 17 N 1.31617 * 119.99783 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99674 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47061 * 90.00055 * 18 16 14 20 20 H 1.48503 * 109.46597 * 210.00084 * 18 16 14 21 21 H 1.48495 * 109.47084 * 329.99710 * 18 16 14 22 22 C 1.53779 * 87.08402 * 334.56577 * 11 10 8 23 23 C 1.41389 * 107.15046 * 0.22379 * 4 3 2 24 24 Cl 1.73605 * 126.00592 * 179.73723 * 23 4 3 25 25 N 1.30535 * 107.99399 * 359.61671 * 23 4 3 26 26 H 1.09005 * 109.46652 * 90.00598 * 1 2 3 27 27 H 1.08997 * 109.47226 * 210.00381 * 1 2 3 28 28 H 1.08998 * 109.47413 * 330.00298 * 1 2 3 29 29 H 1.08002 * 126.28241 * 0.02562 * 3 2 1 30 30 H 0.97002 * 119.99411 * 0.02562 * 7 5 4 31 31 H 1.08997 * 113.61028 * 254.52900 * 10 8 7 32 32 H 1.08998 * 113.61447 * 25.34434 * 10 8 7 33 33 H 0.96998 * 120.00047 * 25.00237 * 13 11 10 34 34 H 0.97006 * 119.99568 * 180.02562 * 17 16 14 35 35 H 1.09002 * 113.61557 * 270.88569 * 22 11 10 36 36 H 1.09004 * 113.61501 * 139.97990 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0896 0.0000 4 6 3.5599 0.6562 0.0006 5 6 4.7630 1.5074 0.0003 6 8 5.8677 0.9988 0.0004 7 7 4.6391 2.8495 -0.0012 8 6 5.8350 3.6955 -0.0009 9 1 6.7125 3.1900 -0.4040 10 6 5.6009 5.0933 -0.5980 11 6 6.4971 5.6377 0.5268 12 1 7.5555 5.6644 0.2675 13 7 6.0196 6.8989 1.0991 14 6 6.9020 7.7541 1.7034 15 1 7.9500 7.4986 1.7585 16 6 6.4495 8.9489 2.2462 17 7 7.2977 9.7711 2.8265 18 14 4.6369 9.3904 2.1515 19 1 3.9367 8.8674 3.3521 20 1 4.4894 10.8671 2.0965 21 1 4.0437 8.7879 0.9308 22 6 6.0919 4.3986 1.3424 23 6 3.5316 -0.7574 -0.0043 24 17 4.9153 -1.8058 -0.0122 25 7 2.2823 -1.1358 0.0007 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9155 2.1169 0.0004 30 1 3.7579 3.2551 -0.0017 31 1 6.0252 5.2192 -1.5940 32 1 4.5654 5.4277 -0.5336 33 1 5.0784 7.1282 1.0500 34 1 6.9814 10.6059 3.2061 35 1 5.1910 4.5437 1.9386 36 1 6.9127 3.9637 1.9129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022963056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:52 Heat of formation + Delta-G solvation = 50.788665 kcal Electronic energy + Delta-G solvation = -20974.848139 eV Core-core repulsion = 17522.036825 eV Total energy + Delta-G solvation = -3452.811313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53856 -40.75762 -39.10748 -37.81162 -35.80303 -34.34488 -34.16702 -32.56196 -31.35755 -28.02494 -26.50145 -26.35868 -24.48458 -22.98691 -22.14366 -21.33600 -20.96392 -19.52953 -18.75185 -17.56572 -17.13217 -16.91397 -16.40340 -16.17113 -15.92897 -15.51599 -15.46347 -14.72909 -14.65451 -14.46974 -14.14470 -13.66536 -13.58561 -13.49434 -13.24893 -12.84908 -12.65670 -12.61666 -12.29611 -11.97877 -11.91041 -11.83672 -11.73023 -11.61041 -10.89133 -10.80908 -10.53762 -10.05312 -9.72602 -9.23573 -7.98818 -5.32738 0.38445 0.40414 0.74720 1.40625 1.46850 1.54170 1.72906 2.30021 2.37291 2.53099 3.31201 3.35487 3.67677 3.71646 3.83114 3.89506 4.10112 4.15224 4.26336 4.32823 4.44635 4.45936 4.73884 4.74105 4.86148 4.91528 4.96621 5.17518 5.22167 5.39422 5.69134 5.74844 5.81558 6.15465 6.25835 6.70280 7.11772 7.36800 7.87309 8.08450 9.23018 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.003104 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.431131 B = 9019.061215 C = 9956.602222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.340 5.340 3 C 0.142 3.858 4 C -0.307 4.307 5 C 0.588 3.412 6 O -0.574 6.574 7 N -0.697 5.697 8 C 0.139 3.861 9 H 0.102 0.898 10 C -0.136 4.136 11 C 0.150 3.850 12 H 0.072 0.928 13 N -0.736 5.736 14 C -0.236 4.236 15 H 0.052 0.948 16 C -0.071 4.071 17 N -0.988 5.988 18 Si 0.962 3.038 19 H -0.278 1.278 20 H -0.300 1.300 21 H -0.241 1.241 22 C -0.171 4.171 23 C 0.151 3.849 24 Cl 0.014 6.986 25 N -0.313 5.313 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.244 0.756 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.370 0.630 34 H 0.257 0.743 35 H 0.083 0.917 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.506 -20.389 -9.369 30.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.119 5.119 3 C -0.011 4.011 4 C -0.322 4.322 5 C 0.376 3.624 6 O -0.454 6.454 7 N -0.348 5.348 8 C 0.033 3.967 9 H 0.120 0.880 10 C -0.175 4.175 11 C 0.041 3.959 12 H 0.090 0.910 13 N -0.378 5.378 14 C -0.367 4.367 15 H 0.070 0.930 16 C -0.261 4.261 17 N -0.639 5.639 18 Si 0.788 3.212 19 H -0.204 1.204 20 H -0.227 1.227 21 H -0.165 1.165 22 C -0.213 4.213 23 C -0.041 4.041 24 Cl 0.042 6.958 25 N -0.138 5.138 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.151 0.849 29 H 0.260 0.740 30 H 0.251 0.749 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.204 0.796 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.371 -21.764 -9.309 31.230 hybrid contribution 0.045 1.156 0.474 1.251 sum -20.327 -20.607 -8.835 30.264 Atomic orbital electron populations 1.22622 0.69477 1.07336 1.06087 1.48658 1.08699 1.02263 1.52306 1.23835 0.87928 0.95911 0.93436 1.20170 0.94525 0.91736 1.25798 1.17409 0.87458 0.82230 0.75261 1.90795 1.28178 1.74506 1.51925 1.45559 1.10039 1.04535 1.74703 1.22076 0.88971 0.89039 0.96608 0.87982 1.23691 1.01722 0.93048 0.99083 1.21632 0.97319 0.83526 0.93461 0.91002 1.42606 1.06570 1.19932 1.68675 1.19109 0.91323 0.98483 1.27811 0.93001 1.25633 1.02830 0.96961 1.00725 1.69917 1.36014 1.12642 1.45316 0.85309 0.79958 0.76703 0.79185 1.20435 1.22711 1.16471 1.24187 1.01517 0.98043 0.97567 1.22836 0.89521 0.90812 1.00902 1.98416 1.35615 1.65229 1.96576 1.77184 1.00059 1.09681 1.26890 0.88013 0.88485 0.84869 0.73961 0.74902 0.89727 0.87887 0.79597 0.93427 0.89802 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.10 11.44 127.77 1.46 1.56 16 2 N -0.34 -4.05 3.98 -367.77 -1.46 -5.52 16 3 C 0.14 1.50 10.99 84.29 0.93 2.43 16 4 C -0.31 -6.42 6.13 -20.13 -0.12 -6.55 16 5 C 0.59 15.06 7.81 86.65 0.68 15.74 16 6 O -0.57 -19.74 15.32 -4.09 -0.06 -19.80 16 7 N -0.70 -13.97 5.34 -443.33 -2.37 -16.34 16 8 C 0.14 3.50 4.24 45.52 0.19 3.70 16 9 H 0.10 2.91 7.46 -2.39 -0.02 2.89 16 10 C -0.14 -3.31 7.58 31.12 0.24 -3.08 16 11 C 0.15 5.26 4.48 45.52 0.20 5.47 16 12 H 0.07 2.73 8.10 -2.39 -0.02 2.71 16 13 N -0.74 -32.14 5.21 -320.44 -1.67 -33.81 16 14 C -0.24 -13.20 10.45 84.03 0.88 -12.32 16 15 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 16 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 17 N -0.99 -63.12 13.97 21.65 0.30 -62.82 16 18 Si 0.96 43.25 27.74 68.60 1.90 45.15 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.24 -9.26 6.52 99.48 0.65 -8.61 16 22 C -0.17 -5.33 7.68 31.12 0.24 -5.09 16 23 C 0.15 3.73 7.88 85.66 0.67 4.40 16 24 Cl 0.01 0.37 28.00 -2.72 -0.08 0.29 16 25 N -0.31 -6.69 12.50 -48.95 -0.61 -7.30 16 26 H 0.10 -0.14 8.14 -2.38 -0.02 -0.16 16 27 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 29 H 0.24 -0.22 7.46 -2.91 -0.02 -0.24 16 30 H 0.41 4.87 7.65 -92.71 -0.71 4.16 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.10 2.08 8.10 -2.39 -0.02 2.06 16 33 H 0.37 14.83 5.79 -92.71 -0.54 14.29 16 34 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -83.18 326.74 1.62 -81.57 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.17 Total: 15.93 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.83 Total: 2.65 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -5.81 Total: -125.78 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.06 Total: -19.80 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.90 Total: 45.15 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal Total: -83.18 1.62 -81.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022963056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.355 kcal (2) G-P(sol) polarization free energy of solvation -83.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds