Wall clock time and date at job start Tue Mar 31 2020 03:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00369 * 2 1 4 4 H 1.48494 * 109.46984 * 270.00147 * 3 2 1 5 5 H 1.48500 * 109.46665 * 29.99949 * 3 2 1 6 6 H 1.48499 * 109.47152 * 149.99558 * 3 2 1 7 7 C 1.38817 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.47579 * 134.49083 * 179.97438 * 9 7 2 11 11 C 1.53948 * 86.11614 * 155.35977 * 10 9 7 12 12 N 1.46507 * 113.74006 * 137.95171 * 11 10 9 13 13 C 1.34776 * 119.99464 * 157.20275 * 12 11 10 14 14 O 1.21524 * 120.00296 * 359.71980 * 13 12 11 15 15 C 1.48008 * 119.99599 * 179.72368 * 13 12 11 16 16 C 1.38890 * 121.17002 * 354.20979 * 15 13 12 17 17 C 1.39345 * 119.67175 * 179.97438 * 16 15 13 18 18 N 1.31109 * 121.90092 * 0.02562 * 17 16 15 19 19 C 1.33282 * 121.61789 * 359.97438 * 18 17 16 20 20 C 1.40840 * 121.91399 * 180.02562 * 19 18 17 21 21 C 1.36173 * 118.76267 * 179.20718 * 20 19 18 22 22 N 1.32536 * 121.96121 * 0.78211 * 21 20 19 23 23 C 1.31337 * 122.60129 * 359.46833 * 22 21 20 24 24 C 1.40079 * 119.87807 * 0.02562 * 23 22 21 25 25 C 1.47818 * 134.45656 * 359.86700 * 9 7 2 26 26 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 27 27 H 1.09000 * 113.76987 * 41.05709 * 10 9 7 28 28 H 1.09000 * 113.76816 * 269.65555 * 10 9 7 29 29 H 1.08992 * 113.74257 * 269.15489 * 11 10 9 30 30 H 0.97001 * 120.00005 * 336.92079 * 12 11 10 31 31 H 1.08005 * 120.16202 * 359.95161 * 16 15 13 32 32 H 1.07994 * 119.05107 * 179.97438 * 17 16 15 33 33 H 1.07996 * 120.61669 * 359.95120 * 20 19 18 34 34 H 1.08003 * 119.01230 * 180.27013 * 21 20 19 35 35 H 1.08007 * 120.05934 * 179.97438 * 23 22 21 36 36 H 1.09002 * 113.76357 * 90.37670 * 25 9 7 37 37 H 1.08993 * 113.83314 * 318.91899 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3469 -4.0829 0.6409 12 7 -0.3334 -5.2614 0.0979 13 6 -1.2773 -5.8897 0.8264 14 8 -1.5604 -5.4819 1.9356 15 6 -1.9690 -7.0766 0.2755 16 6 -1.7519 -7.4928 -1.0317 17 6 -2.4194 -8.6150 -1.5181 18 7 -3.2558 -9.2996 -0.7760 19 6 -3.5114 -8.9569 0.4864 20 6 -4.4082 -9.6880 1.2894 21 6 -4.6093 -9.2903 2.5762 22 7 -3.9989 -8.2302 3.0864 23 6 -3.1546 -7.4990 2.3954 24 6 -2.8712 -7.8308 1.0643 25 6 -0.1059 -2.7570 0.0025 26 1 -0.4850 0.8401 -0.0004 27 1 2.5623 -4.0324 0.6557 28 1 1.8317 -4.2351 -0.9970 29 1 0.3593 -4.0639 1.7306 30 1 -0.1075 -5.5869 -0.7874 31 1 -1.0693 -6.9491 -1.6680 32 1 -2.2434 -8.9296 -2.5362 33 1 -4.9176 -10.5550 0.8957 34 1 -5.2928 -9.8506 3.1969 35 1 -2.6804 -6.6430 2.8524 36 1 -0.5312 -2.8721 -0.9945 37 1 -0.7189 -2.1399 0.6592 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030746493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:08 Heat of formation + Delta-G solvation = 100.060968 kcal Electronic energy + Delta-G solvation = -22714.540424 eV Core-core repulsion = 19266.298567 eV Total energy + Delta-G solvation = -3448.241856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58305 -39.66291 -38.22616 -37.69757 -34.10162 -33.55596 -31.95294 -31.78306 -30.56223 -27.66350 -25.76134 -24.95793 -24.40761 -23.98105 -22.66458 -20.93554 -19.81568 -18.77122 -18.12678 -17.43182 -16.87961 -16.22730 -16.00851 -15.39097 -15.08222 -14.97011 -14.91991 -14.45020 -14.38383 -13.91401 -13.63646 -13.31173 -13.00465 -12.78676 -12.25763 -12.02173 -11.61280 -11.57285 -10.97820 -10.92250 -10.80757 -10.59014 -10.49445 -10.11709 -9.90453 -9.64351 -9.61795 -9.40565 -8.89406 -8.83938 -8.62877 -7.01972 -5.85287 -3.19881 -0.29873 0.40026 1.33293 2.58203 3.00456 3.04242 3.35253 3.40035 3.42474 3.82177 3.85365 4.16247 4.26181 4.29022 4.42812 4.43193 4.46778 4.89449 4.99681 5.03489 5.19081 5.29406 5.37347 5.42954 5.48010 5.63574 5.69576 5.85905 6.05849 6.09400 6.24256 6.37440 6.44757 6.56270 7.11994 7.19397 7.40591 7.42831 7.56742 7.76082 7.87775 8.15758 8.94514 9.61103 10.45274 11.31331 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.003025 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.871532 B = 9252.593878 C = 9737.663225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.229 4.229 8 H 0.083 0.917 9 N -0.605 5.605 10 C 0.113 3.887 11 C 0.089 3.911 12 N -0.698 5.698 13 C 0.554 3.446 14 O -0.524 6.524 15 C -0.037 4.037 16 C -0.148 4.148 17 C 0.150 3.850 18 N -0.467 5.467 19 C 0.153 3.847 20 C -0.153 4.153 21 C 0.094 3.906 22 N -0.489 5.489 23 C 0.165 3.835 24 C -0.135 4.135 25 C 0.154 3.846 26 H 0.256 0.744 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.116 0.884 30 H 0.398 0.602 31 H 0.149 0.851 32 H 0.171 0.829 33 H 0.146 0.854 34 H 0.159 0.841 35 H 0.202 0.798 36 H 0.030 0.970 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 -19.750 -2.290 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.100 0.900 9 N -0.332 5.332 10 C -0.013 4.013 11 C -0.015 4.015 12 N -0.348 5.348 13 C 0.340 3.660 14 O -0.402 6.402 15 C -0.051 4.051 16 C -0.169 4.169 17 C -0.024 4.024 18 N -0.175 5.175 19 C 0.027 3.973 20 C -0.174 4.174 21 C -0.051 4.051 22 N -0.197 5.197 23 C -0.007 4.007 24 C -0.140 4.140 25 C 0.028 3.972 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.134 0.866 30 H 0.233 0.767 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.164 0.836 34 H 0.176 0.824 35 H 0.218 0.782 36 H 0.048 0.952 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.484 -19.713 -0.833 20.768 hybrid contribution 1.109 1.181 -1.416 2.152 sum -5.376 -18.532 -2.250 19.426 Atomic orbital electron populations 1.69814 1.05075 1.25650 1.55838 1.24828 0.95709 0.97713 1.01924 0.86082 0.78656 0.83170 0.77598 1.21527 1.21504 1.20491 1.18976 0.90269 0.81498 1.44841 0.89955 1.45700 1.02300 0.99149 1.86058 1.22868 0.94409 0.86958 0.97110 1.24134 0.93536 0.83589 1.00290 1.46111 1.38420 1.30622 1.19670 1.18030 0.80253 0.82374 0.85391 1.90614 1.64012 1.65971 1.19558 1.20527 0.95442 0.94956 0.94163 1.22540 1.00835 0.98222 0.95274 1.23125 0.89643 0.89936 0.99657 1.67859 1.15094 1.29850 1.04723 1.18912 0.95105 0.92378 0.90877 1.21690 0.99430 1.01641 0.94613 1.22426 0.96662 0.93017 0.92962 1.67771 1.07860 1.05625 1.38492 1.24546 0.90162 0.96978 0.88980 1.19697 0.99451 0.97415 0.97471 1.22733 0.88333 0.88839 0.97306 0.93427 0.92978 0.94648 0.86627 0.76682 0.83311 0.81193 0.83643 0.82352 0.78191 0.95246 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 11.39 55.49 0.63 -26.14 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.23 -6.21 10.70 -15.06 -0.16 -6.37 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -14.81 3.70 -177.86 -0.66 -15.47 16 10 C 0.11 2.09 8.69 -2.97 -0.03 2.07 16 11 C 0.09 1.58 4.40 -70.13 -0.31 1.27 16 12 N -0.70 -9.50 5.33 -56.22 -0.30 -9.80 16 13 C 0.55 8.00 7.76 -12.26 -0.10 7.90 16 14 O -0.52 -9.18 13.24 5.34 0.07 -9.11 16 15 C -0.04 -0.45 5.94 -104.37 -0.62 -1.07 16 16 C -0.15 -1.30 9.60 -38.93 -0.37 -1.67 16 17 C 0.15 1.27 11.14 -17.45 -0.19 1.08 16 18 N -0.47 -5.22 10.33 -10.95 -0.11 -5.33 16 19 C 0.15 1.89 6.63 -84.88 -0.56 1.32 16 20 C -0.15 -1.60 10.08 -39.34 -0.40 -2.00 16 21 C 0.09 1.00 11.06 -17.99 -0.20 0.80 16 22 N -0.49 -6.60 10.31 -13.24 -0.14 -6.73 16 23 C 0.16 2.32 10.52 -17.07 -0.18 2.14 16 24 C -0.14 -1.79 5.76 -106.55 -0.61 -2.41 16 25 C 0.15 3.48 7.33 -2.83 -0.02 3.46 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.12 2.23 7.51 -51.93 -0.39 1.84 16 30 H 0.40 4.10 6.89 -40.82 -0.28 3.82 16 31 H 0.15 0.85 6.56 -52.48 -0.34 0.51 16 32 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.20 3.04 5.09 -52.48 -0.27 2.77 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 2.07 7.16 -51.93 -0.37 1.70 16 LS Contribution 318.19 15.07 4.80 4.80 Total: -1.00 -33.47 318.19 -8.32 -41.78 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.74 Total: 3.07 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -3.85 Total: 6.28 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.58 Total: -63.47 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.47 -8.32 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030746493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.845 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds