Wall clock time and date at job start Tue Mar 31 2020 03:56:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86802 * 120.00147 * 2 1
4 4 H 1.48504 * 109.46722 * 274.15355 * 3 2 1
5 5 H 1.48502 * 109.46999 * 34.15074 * 3 2 1
6 6 H 1.48499 * 109.47108 * 154.15272 * 3 2 1
7 7 C 1.38817 * 119.99796 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99560 * 197.02819 * 7 2 1
9 9 N 1.36935 * 120.00270 * 17.02244 * 7 2 1
10 10 C 1.47151 * 120.98024 * 26.60936 * 9 7 2
11 11 C 1.53299 * 108.38293 * 129.44119 * 10 9 7
12 12 O 1.42959 * 109.26091 * 52.28163 * 11 10 9
13 13 C 1.42972 * 114.16934 * 297.49759 * 12 11 10
14 14 H 1.09002 * 109.51194 * 302.55376 * 13 12 11
15 15 C 1.52995 * 109.51124 * 182.45209 * 13 12 11
16 16 N 1.46497 * 109.47687 * 65.09984 * 15 13 12
17 17 C 1.34776 * 120.00600 * 179.97438 * 16 15 13
18 18 O 1.21586 * 119.99537 * 0.02562 * 17 16 15
19 19 C 1.47617 * 120.00383 * 180.02562 * 17 16 15
20 20 N 1.31870 * 126.45719 * 0.02743 * 19 17 16
21 21 N 1.28468 * 110.15691 * 180.02562 * 20 19 17
22 22 H 0.96995 * 124.93731 * 179.73766 * 21 20 19
23 23 C 1.35731 * 110.12959 * 359.97438 * 21 20 19
24 24 C 1.35539 * 107.11982 * 0.02562 * 23 21 20
25 25 F 1.35103 * 127.24461 * 180.02562 * 24 23 21
26 26 C 1.47148 * 120.98328 * 206.58753 * 9 7 2
27 27 H 0.96990 * 119.99602 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.68099 * 249.16610 * 10 9 7
29 29 H 1.08997 * 109.67976 * 9.68547 * 10 9 7
30 30 H 1.08993 * 109.51186 * 172.22253 * 11 10 9
31 31 H 1.08999 * 109.51335 * 292.38641 * 11 10 9
32 32 H 1.09005 * 109.46986 * 305.10247 * 15 13 12
33 33 H 1.09005 * 109.47168 * 185.10580 * 15 13 12
34 34 H 0.97006 * 119.99645 * 0.02562 * 16 15 13
35 35 H 1.07998 * 126.44257 * 180.02562 * 23 21 20
36 36 H 1.09006 * 109.68002 * 110.83119 * 26 9 7
37 37 H 1.09001 * 109.71434 * 350.30314 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4099 2.0970 -1.3965
5 1 1.4943 2.6257 0.7860
6 1 3.5889 1.4164 0.6104
7 6 2.0102 -1.2022 -0.0005
8 1 3.0548 -1.2228 0.2734
9 7 1.3706 -2.3620 -0.3482
10 6 0.2046 -2.3442 -1.2457
11 6 0.4385 -3.3677 -2.3627
12 8 0.7738 -4.6305 -1.7825
13 6 1.9840 -4.6222 -1.0213
14 1 2.8087 -4.2910 -1.6524
15 6 2.2715 -6.0328 -0.5033
16 7 2.5348 -6.9247 -1.6353
17 6 2.8148 -8.2250 -1.4179
18 8 2.8486 -8.6579 -0.2822
19 6 3.0807 -9.1235 -2.5585
20 7 3.0780 -8.7915 -3.8348
21 7 3.3484 -9.8172 -4.5595
22 1 3.3986 -9.8152 -5.5282
23 6 3.5484 -10.9053 -3.7731
24 6 3.3863 -10.5044 -2.4886
25 9 3.4944 -11.2625 -1.3756
26 6 1.8292 -3.6629 0.1642
27 1 -0.4849 0.8400 -0.0004
28 1 -0.6929 -2.6093 -0.6868
29 1 0.0883 -1.3498 -1.6767
30 1 -0.4684 -3.4701 -2.9584
31 1 1.2571 -3.0315 -2.9990
32 1 1.4088 -6.3980 0.0540
33 1 3.1431 -6.0090 0.1509
34 1 2.5082 -6.5792 -2.5413
35 1 3.7912 -11.9029 -4.1079
36 1 1.0952 -4.0608 0.8651
37 1 2.7889 -3.5426 0.6668
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001035494758.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:56:45
Heat of formation + Delta-G solvation = -20.141267 kcal
Electronic energy + Delta-G solvation = -23717.752773 eV
Core-core repulsion = 19833.529332 eV
Total energy + Delta-G solvation = -3884.223441 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 298.123 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-48.86006 -43.01003 -39.47412 -38.35857 -34.91024 -34.27697 -32.39054 -31.45584
-30.95976 -30.50141 -27.59322 -25.87755 -24.00279 -23.14246 -22.25563 -21.64662
-20.48156 -19.62294 -19.18052 -17.40358 -16.86468 -16.71085 -16.21886 -16.04504
-15.83224 -15.27822 -14.99759 -14.84490 -14.56124 -14.33328 -14.20611 -13.75945
-13.25606 -13.08547 -12.81522 -12.71218 -12.35375 -11.58149 -11.37579 -11.12789
-10.86731 -10.73003 -10.40999 -10.26483 -10.20628 -9.98214 -9.96401 -9.65333
-9.32691 -9.06302 -8.95933 -8.55041 -6.76035 -5.85023 -3.28956 1.13290
1.48342 2.25636 3.04360 3.22300 3.34025 3.41205 3.42834 3.88101
4.20844 4.26457 4.42734 4.44077 4.77363 4.99941 5.14968 5.32500
5.50433 5.52174 5.80658 5.85968 5.96633 6.04911 6.15970 6.28699
6.36576 6.37571 6.48856 6.51264 6.76251 7.09878 7.17361 7.50928
7.58157 7.70757 7.86130 8.18155 8.32815 9.10688 9.73299 10.30400
11.23155
Molecular weight = 298.12amu
Principal moments of inertia in cm(-1)
A = 0.034337 B = 0.002861 C = 0.002793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 815.251541 B = 9785.480750 C =10020.976947
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.002 3.998
3 Si 0.906 3.094
4 H -0.287 1.287
5 H -0.290 1.290
6 H -0.278 1.278
7 C -0.256 4.256
8 H 0.069 0.931
9 N -0.594 5.594
10 C 0.140 3.860
11 C 0.040 3.960
12 O -0.389 6.389
13 C 0.065 3.935
14 H 0.060 0.940
15 C 0.129 3.871
16 N -0.703 5.703
17 C 0.597 3.403
18 O -0.527 6.527
19 C -0.025 4.025
20 N -0.230 5.230
21 N -0.370 5.370
22 H 0.457 0.543
23 C -0.039 4.039
24 C 0.037 3.963
25 F -0.099 7.099
26 C 0.122 3.878
27 H 0.255 0.745
28 H 0.029 0.971
29 H 0.093 0.907
30 H 0.081 0.919
31 H 0.041 0.959
32 H 0.079 0.921
33 H 0.085 0.915
34 H 0.410 0.590
35 H 0.199 0.801
36 H 0.031 0.969
37 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.317 -19.464 -11.902 23.673
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.196 4.196
3 Si 0.736 3.264
4 H -0.214 1.214
5 H -0.217 1.217
6 H -0.203 1.203
7 C -0.385 4.385
8 H 0.087 0.913
9 N -0.318 5.318
10 C 0.014 3.986
11 C -0.038 4.038
12 O -0.308 6.308
13 C 0.005 3.995
14 H 0.078 0.922
15 C 0.006 3.994
16 N -0.354 5.354
17 C 0.380 3.620
18 O -0.402 6.402
19 C -0.187 4.187
20 N -0.067 5.067
21 N -0.086 5.086
22 H 0.303 0.697
23 C -0.184 4.184
24 C 0.008 3.992
25 F -0.078 7.078
26 C -0.006 4.006
27 H 0.065 0.935
28 H 0.047 0.953
29 H 0.111 0.889
30 H 0.100 0.900
31 H 0.059 0.941
32 H 0.097 0.903
33 H 0.103 0.897
34 H 0.245 0.755
35 H 0.215 0.785
36 H 0.049 0.951
37 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 5.954 -18.863 -11.672 22.967
hybrid contribution 0.630 0.432 -0.302 0.821
sum 6.584 -18.431 -11.974 22.944
Atomic orbital electron populations
1.70040 1.05278 1.25651 1.53667 1.25062 0.95350 0.98506 1.00728
0.86220 0.79148 0.83462 0.77616 1.21424 1.21686 1.20306 1.19221
0.92690 0.84482 1.42093 0.91288 1.44070 1.34154 1.01051 1.52517
1.21438 0.89252 0.98233 0.89689 1.23321 0.99063 0.84887 0.96529
1.87799 1.41720 1.32585 1.68740 1.22808 0.87747 0.93701 0.95246
0.92248 1.21510 1.01940 0.87766 0.88186 1.45773 1.69828 1.08205
1.11553 1.16709 0.77549 0.81509 0.86220 1.90853 1.52053 1.75614
1.21653 1.22270 1.10752 0.93834 0.91848 1.73678 1.16721 1.13813
1.02502 1.43037 1.50455 1.04757 1.10357 0.69707 1.22677 1.10222
0.95524 0.90023 1.17190 1.09583 0.88941 0.83535 1.91549 1.94014
1.73713 1.48516 1.21444 0.99050 0.87159 0.92898 0.93505 0.95328
0.88867 0.90046 0.94092 0.90266 0.89731 0.75500 0.78456 0.95119
0.91683
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.92 11.18 55.49 0.62 -25.30 16
2 C 0.00 0.06 4.94 -17.43 -0.09 -0.02 16
3 Si 0.91 21.38 29.59 -169.99 -5.03 16.35 16
4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16
7 C -0.26 -6.93 9.64 -15.06 -0.15 -7.07 16
8 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16
9 N -0.59 -14.84 3.05 -171.83 -0.52 -15.36 16
10 C 0.14 3.31 5.44 -3.53 -0.02 3.29 16
11 C 0.04 0.76 6.98 37.31 0.26 1.02 16
12 O -0.39 -7.36 10.33 -35.23 -0.36 -7.72 16
13 C 0.06 1.14 2.81 -26.58 -0.07 1.07 16
14 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
15 C 0.13 2.01 5.34 -4.05 -0.02 1.98 16
16 N -0.70 -10.13 5.50 -61.32 -0.34 -10.47 16
17 C 0.60 9.21 7.82 -12.43 -0.10 9.11 16
18 O -0.53 -9.78 16.67 5.29 0.09 -9.69 16
19 C -0.02 -0.32 7.13 -82.74 -0.59 -0.91 16
20 N -0.23 -2.34 11.91 33.43 0.40 -1.94 16
21 N -0.37 -2.20 6.86 30.63 0.21 -1.99 16
22 H 0.46 0.70 8.96 -190.44 -1.71 -1.00 16
23 C -0.04 -0.25 12.06 -16.79 -0.20 -0.45 16
24 C 0.04 0.42 8.03 -39.26 -0.32 0.11 16
25 F -0.10 -1.31 17.03 2.25 0.04 -1.27 16
26 C 0.12 2.54 6.02 -3.54 -0.02 2.51 16
27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16
30 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16
31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16
33 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16
34 H 0.41 5.43 8.19 -40.82 -0.33 5.10 16
35 H 0.20 0.39 8.06 -52.49 -0.42 -0.03 16
36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16
37 H 0.06 1.28 7.96 -51.93 -0.41 0.87 16
LS Contribution 322.21 15.07 4.86 4.86
Total: -1.00 -34.40 322.21 -7.06 -41.47
By element:
Atomic # 1 Polarization: 6.12 SS G_CDS: -5.71 Total: 0.42 kcal
Atomic # 6 Polarization: 11.97 SS G_CDS: -1.31 Total: 10.65 kcal
Atomic # 7 Polarization: -55.43 SS G_CDS: 0.37 Total: -55.06 kcal
Atomic # 8 Polarization: -17.14 SS G_CDS: -0.28 Total: -17.41 kcal
Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -34.40 -7.06 -41.47 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035494758.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.324 kcal
(2) G-P(sol) polarization free energy of solvation -34.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.079 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds