Wall clock time and date at job start Tue Mar 31 2020 03:56:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86802 * 120.00147 * 2 1
4 4 H 1.48504 * 109.46722 * 274.15355 * 3 2 1
5 5 H 1.48502 * 109.46999 * 34.15074 * 3 2 1
6 6 H 1.48499 * 109.47108 * 154.15272 * 3 2 1
7 7 C 1.38817 * 119.99796 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99560 * 197.02819 * 7 2 1
9 9 N 1.36935 * 120.00270 * 17.02244 * 7 2 1
10 10 C 1.47151 * 120.98024 * 26.60936 * 9 7 2
11 11 C 1.53299 * 108.38293 * 129.44119 * 10 9 7
12 12 O 1.42959 * 109.26091 * 52.28163 * 11 10 9
13 13 C 1.42972 * 114.16934 * 297.49759 * 12 11 10
14 14 H 1.09002 * 109.51194 * 302.55376 * 13 12 11
15 15 C 1.52995 * 109.51124 * 182.45209 * 13 12 11
16 16 N 1.46497 * 109.47687 * 65.09984 * 15 13 12
17 17 C 1.34776 * 120.00600 * 179.97438 * 16 15 13
18 18 O 1.21586 * 119.99537 * 0.02562 * 17 16 15
19 19 C 1.47617 * 120.00383 * 180.02562 * 17 16 15
20 20 N 1.31870 * 126.45719 * 0.02743 * 19 17 16
21 21 N 1.28468 * 110.15691 * 180.02562 * 20 19 17
22 22 H 0.96995 * 124.93731 * 179.73766 * 21 20 19
23 23 C 1.35731 * 110.12959 * 359.97438 * 21 20 19
24 24 C 1.35539 * 107.11982 * 0.02562 * 23 21 20
25 25 F 1.35103 * 127.24461 * 180.02562 * 24 23 21
26 26 C 1.47148 * 120.98328 * 206.58753 * 9 7 2
27 27 H 0.96990 * 119.99602 * 0.02562 * 1 2 3
28 28 H 1.08998 * 109.68099 * 249.16610 * 10 9 7
29 29 H 1.08997 * 109.67976 * 9.68547 * 10 9 7
30 30 H 1.08993 * 109.51186 * 172.22253 * 11 10 9
31 31 H 1.08999 * 109.51335 * 292.38641 * 11 10 9
32 32 H 1.09005 * 109.46986 * 305.10247 * 15 13 12
33 33 H 1.09005 * 109.47168 * 185.10580 * 15 13 12
34 34 H 0.97006 * 119.99645 * 0.02562 * 16 15 13
35 35 H 1.07998 * 126.44257 * 180.02562 * 23 21 20
36 36 H 1.09006 * 109.68002 * 110.83119 * 26 9 7
37 37 H 1.09001 * 109.71434 * 350.30314 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4099 2.0970 -1.3965
5 1 1.4943 2.6257 0.7860
6 1 3.5889 1.4164 0.6104
7 6 2.0102 -1.2022 -0.0005
8 1 3.0548 -1.2228 0.2734
9 7 1.3706 -2.3620 -0.3482
10 6 0.2046 -2.3442 -1.2457
11 6 0.4385 -3.3677 -2.3627
12 8 0.7738 -4.6305 -1.7825
13 6 1.9840 -4.6222 -1.0213
14 1 2.8087 -4.2910 -1.6524
15 6 2.2715 -6.0328 -0.5033
16 7 2.5348 -6.9247 -1.6353
17 6 2.8148 -8.2250 -1.4179
18 8 2.8486 -8.6579 -0.2822
19 6 3.0807 -9.1235 -2.5585
20 7 3.0780 -8.7915 -3.8348
21 7 3.3484 -9.8172 -4.5595
22 1 3.3986 -9.8152 -5.5282
23 6 3.5484 -10.9053 -3.7731
24 6 3.3863 -10.5044 -2.4886
25 9 3.4944 -11.2625 -1.3756
26 6 1.8292 -3.6629 0.1642
27 1 -0.4849 0.8400 -0.0004
28 1 -0.6929 -2.6093 -0.6868
29 1 0.0883 -1.3498 -1.6767
30 1 -0.4684 -3.4701 -2.9584
31 1 1.2571 -3.0315 -2.9990
32 1 1.4088 -6.3980 0.0540
33 1 3.1431 -6.0090 0.1509
34 1 2.5082 -6.5792 -2.5413
35 1 3.7912 -11.9029 -4.1079
36 1 1.0952 -4.0608 0.8651
37 1 2.7889 -3.5426 0.6668
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035494758.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:56:44
Heat of formation + Delta-G solvation = -47.557827 kcal
Electronic energy + Delta-G solvation = -23718.941645 eV
Core-core repulsion = 19833.529332 eV
Total energy + Delta-G solvation = -3885.412312 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 298.123 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-49.70162 -43.70959 -40.76390 -39.88696 -36.53242 -35.82986 -33.50664 -33.07415
-32.13588 -31.55535 -29.27710 -27.45377 -25.28973 -24.79819 -23.33972 -22.76018
-21.78093 -21.07385 -19.91365 -18.89291 -18.33626 -17.62800 -17.40451 -17.15409
-16.94224 -16.83202 -16.21913 -16.01120 -15.90266 -15.58935 -15.46008 -15.39138
-15.01764 -14.62990 -14.47516 -13.73407 -13.57724 -13.22633 -13.01528 -12.70451
-12.53159 -12.16925 -12.16146 -12.06966 -11.88066 -11.49425 -11.27567 -10.80111
-10.72107 -10.55151 -10.19954 -10.00855 -8.76001 -7.91452 -5.39262 0.27770
0.81020 1.47463 1.48118 1.57996 1.69771 2.03716 2.13783 2.48040
2.76683 3.02762 3.23554 3.48144 3.54121 3.83558 3.91890 3.98537
4.07458 4.24562 4.42724 4.48203 4.51779 4.60693 4.71997 4.75981
4.89289 5.05330 5.18439 5.23660 5.26893 5.55189 5.61089 5.92027
6.25285 6.31792 6.34729 6.62607 7.03925 7.05886 7.73672 8.27721
9.14788
Molecular weight = 298.12amu
Principal moments of inertia in cm(-1)
A = 0.034337 B = 0.002861 C = 0.002793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 815.251541 B = 9785.480750 C =10020.976947
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.050 4.050
3 Si 0.973 3.027
4 H -0.283 1.283
5 H -0.296 1.296
6 H -0.267 1.267
7 C -0.267 4.267
8 H 0.073 0.927
9 N -0.613 5.613
10 C 0.144 3.856
11 C 0.054 3.946
12 O -0.391 6.391
13 C 0.080 3.920
14 H 0.070 0.930
15 C 0.139 3.861
16 N -0.696 5.696
17 C 0.595 3.405
18 O -0.569 6.569
19 C -0.057 4.057
20 N -0.237 5.237
21 N -0.342 5.342
22 H 0.478 0.522
23 C 0.009 3.991
24 C -0.009 4.009
25 F -0.119 7.119
26 C 0.117 3.883
27 H 0.252 0.748
28 H -0.001 1.001
29 H 0.067 0.933
30 H 0.109 0.891
31 H 0.052 0.948
32 H 0.067 0.933
33 H 0.094 0.906
34 H 0.417 0.583
35 H 0.250 0.750
36 H 0.019 0.981
37 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.808 -20.905 -14.439 26.579
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.246 4.246
3 Si 0.800 3.200
4 H -0.209 1.209
5 H -0.223 1.223
6 H -0.192 1.192
7 C -0.396 4.396
8 H 0.091 0.909
9 N -0.338 5.338
10 C 0.018 3.982
11 C -0.024 4.024
12 O -0.310 6.310
13 C 0.020 3.980
14 H 0.088 0.912
15 C 0.015 3.985
16 N -0.347 5.347
17 C 0.380 3.620
18 O -0.447 6.447
19 C -0.217 4.217
20 N -0.076 5.076
21 N -0.062 5.062
22 H 0.330 0.670
23 C -0.137 4.137
24 C -0.038 4.038
25 F -0.098 7.098
26 C -0.009 4.009
27 H 0.061 0.939
28 H 0.017 0.983
29 H 0.086 0.914
30 H 0.127 0.873
31 H 0.070 0.930
32 H 0.085 0.915
33 H 0.112 0.888
34 H 0.253 0.747
35 H 0.266 0.734
36 H 0.037 0.963
37 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 7.460 -20.313 -14.262 25.916
hybrid contribution 0.171 0.797 0.427 0.921
sum 7.631 -19.515 -13.835 25.109
Atomic orbital electron populations
1.70197 1.06763 1.26081 1.55123 1.25853 0.96104 1.01681 1.00938
0.85176 0.78122 0.79140 0.77529 1.20927 1.22286 1.19166 1.19573
0.93076 0.85539 1.41451 0.90903 1.44352 1.34248 1.01948 1.53223
1.21304 0.88039 0.98322 0.90532 1.23168 1.00789 0.83568 0.94855
1.87813 1.42337 1.32135 1.68705 1.22643 0.87598 0.93974 0.93771
0.91170 1.21310 1.01922 0.86732 0.88554 1.45647 1.69553 1.08001
1.11452 1.17088 0.76553 0.81697 0.86647 1.90817 1.53954 1.76344
1.23543 1.21919 1.13547 0.94290 0.91989 1.73611 1.17102 1.15185
1.01672 1.43246 1.47740 1.03827 1.11355 0.67015 1.23334 1.05716
0.96894 0.87761 1.17652 1.12659 0.88692 0.84831 1.91486 1.94469
1.73980 1.49875 1.21596 0.98959 0.86203 0.94192 0.93925 0.98299
0.91444 0.87324 0.93010 0.91452 0.88760 0.74655 0.73372 0.96288
0.90737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.10 11.18 21.65 0.24 -54.85 16
2 C -0.05 -2.78 4.94 84.86 0.42 -2.36 16
3 Si 0.97 44.21 29.59 68.60 2.03 46.24 16
4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
5 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16
6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
7 C -0.27 -14.53 9.64 84.03 0.81 -13.72 16
8 H 0.07 3.83 7.89 -2.91 -0.02 3.80 16
9 N -0.61 -30.97 3.05 -697.55 -2.13 -33.09 16
10 C 0.14 6.95 5.44 86.36 0.47 7.42 16
11 C 0.05 2.01 6.98 72.08 0.50 2.51 16
12 O -0.39 -14.32 10.33 -148.98 -1.54 -15.86 16
13 C 0.08 2.73 2.81 30.69 0.09 2.82 16
14 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16
15 C 0.14 4.25 5.34 86.38 0.46 4.72 16
16 N -0.70 -19.65 5.50 -466.19 -2.56 -22.22 16
17 C 0.59 18.44 7.82 86.72 0.68 19.12 16
18 O -0.57 -21.73 16.67 -3.99 -0.07 -21.80 16
19 C -0.06 -1.41 7.13 42.45 0.30 -1.11 16
20 N -0.24 -4.26 11.91 -48.15 -0.57 -4.83 16
21 N -0.34 -2.71 6.86 -56.99 -0.39 -3.10 16
22 H 0.48 -0.80 8.96 -220.00 -1.97 -2.77 16
23 C 0.01 0.08 12.06 83.47 1.01 1.08 16
24 C -0.01 -0.18 8.03 22.47 0.18 0.00 16
25 F -0.12 -3.13 17.03 44.97 0.77 -2.36 16
26 C 0.12 4.88 6.02 86.35 0.52 5.40 16
27 H 0.25 14.30 8.31 -92.72 -0.77 13.53 16
28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16
29 H 0.07 3.60 6.17 -2.39 -0.01 3.58 16
30 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16
31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
32 H 0.07 2.24 8.14 -2.38 -0.02 2.23 16
33 H 0.09 2.72 8.14 -2.38 -0.02 2.71 16
34 H 0.42 10.51 8.19 -92.70 -0.76 9.75 16
35 H 0.25 -0.56 8.06 -2.91 -0.02 -0.58 16
36 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16
37 H 0.07 2.92 7.96 -2.39 -0.02 2.90 16
Total: -1.00 -77.77 322.21 -0.38 -78.15
By element:
Atomic # 1 Polarization: 9.44 SS G_CDS: -1.60 Total: 7.84 kcal
Atomic # 6 Polarization: 20.44 SS G_CDS: 5.44 Total: 25.88 kcal
Atomic # 7 Polarization: -112.68 SS G_CDS: -5.41 Total: -118.09 kcal
Atomic # 8 Polarization: -36.05 SS G_CDS: -1.61 Total: -37.65 kcal
Atomic # 9 Polarization: -3.13 SS G_CDS: 0.77 Total: -2.36 kcal
Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal
Total: -77.77 -0.38 -78.15 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035494758.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.595 kcal
(2) G-P(sol) polarization free energy of solvation -77.770 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.175 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds