Wall clock time and date at job start Tue Mar 31 2020 03:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00385 * 2 1 4 4 O 1.21280 * 120.00492 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99687 * 0.02562 * 3 2 1 6 6 N 1.46494 * 109.46874 * 179.97438 * 5 3 2 7 7 C 1.35049 * 126.03564 * 124.99819 * 6 5 3 8 8 C 1.35378 * 107.72819 * 179.97438 * 7 6 5 9 9 Cl 1.73597 * 126.04346 * 179.97438 * 8 7 6 10 10 C 1.39930 * 107.90536 * 0.02562 * 8 7 6 11 11 N 1.30847 * 108.21545 * 359.75212 * 10 8 7 12 12 C 1.46499 * 119.99937 * 180.02562 * 2 1 3 13 13 C 1.53499 * 114.20527 * 59.99818 * 12 2 1 14 14 N 1.47066 * 87.98642 * 220.14732 * 13 12 2 15 15 C 1.36935 * 136.05905 * 207.08539 * 14 13 12 16 16 H 1.07996 * 120.00461 * 6.76058 * 15 14 13 17 17 C 1.38816 * 119.99877 * 186.76278 * 15 14 13 18 18 N 1.31618 * 119.99884 * 172.25761 * 17 15 14 19 19 Si 1.86798 * 120.00153 * 352.25282 * 17 15 14 20 20 H 1.48497 * 109.47359 * 175.36223 * 19 17 15 21 21 H 1.48503 * 109.47030 * 295.36478 * 19 17 15 22 22 H 1.48505 * 109.46945 * 55.36328 * 19 17 15 23 23 C 1.47070 * 87.88468 * 27.34150 * 14 13 12 24 24 H 1.09003 * 109.46861 * 269.99563 * 1 2 3 25 25 H 1.08999 * 109.47091 * 29.99510 * 1 2 3 26 26 H 1.08998 * 109.47582 * 149.99539 * 1 2 3 27 27 H 1.08997 * 109.46845 * 299.99691 * 5 3 2 28 28 H 1.08999 * 109.47327 * 59.99287 * 5 3 2 29 29 H 1.08002 * 126.13646 * 359.94084 * 7 6 5 30 30 H 1.07997 * 125.89039 * 179.97438 * 10 8 7 31 31 H 1.08993 * 113.28511 * 193.06317 * 12 2 1 32 32 H 1.09001 * 113.46838 * 105.36625 * 13 12 2 33 33 H 1.08996 * 113.52140 * 334.93417 * 13 12 2 34 34 H 0.97004 * 120.00412 * 4.87236 * 18 17 15 35 35 H 1.09004 * 113.46535 * 87.44030 * 23 14 13 36 36 H 1.08996 * 113.46991 * 217.87726 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3374 3.5857 0.0011 7 6 2.3777 4.5970 -0.8931 8 6 3.3980 5.4155 -0.5440 9 17 3.8739 6.8650 -1.3724 10 6 4.0017 4.8859 0.6018 11 7 3.3637 3.7922 0.9320 12 6 2.1975 -1.2687 -0.0006 13 6 1.9059 -2.1632 -1.2134 14 7 1.9168 -3.3161 -0.3004 15 6 2.1883 -4.6542 -0.4050 16 1 2.5822 -5.0548 -1.3272 17 6 1.9570 -5.4957 0.6745 18 7 2.0717 -6.7989 0.5294 19 14 1.4834 -4.7788 2.3331 20 1 1.1844 -5.8813 3.2819 21 1 2.6078 -3.9640 2.8595 22 1 0.2813 -3.9209 2.1765 23 6 1.5015 -2.4006 0.7731 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 0.7585 2.5302 -0.8892 28 1 0.7590 2.5299 0.8907 29 1 1.7152 4.7288 -1.7358 30 1 4.8461 5.3089 1.1257 31 1 3.2575 -1.1543 0.2258 32 1 2.7143 -2.1807 -1.9443 33 1 0.9321 -1.9778 -1.6666 34 1 2.3859 -7.1676 -0.3110 35 1 0.4208 -2.2771 0.8443 36 1 1.9654 -2.6203 1.7346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043982931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:58 Heat of formation + Delta-G solvation = 123.610703 kcal Electronic energy + Delta-G solvation = -21462.066876 eV Core-core repulsion = 18012.413364 eV Total energy + Delta-G solvation = -3449.653513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.58989 -40.13676 -38.20923 -36.65260 -34.91113 -33.54786 -32.31578 -30.34230 -28.64017 -27.47482 -26.81809 -25.48658 -23.14356 -21.60286 -21.48446 -20.03072 -18.99888 -17.86281 -17.59620 -17.28057 -16.30729 -16.14615 -15.40192 -14.96776 -14.75414 -14.54459 -13.95860 -13.73930 -13.53738 -13.30322 -13.19093 -12.76391 -12.47854 -12.21102 -12.07642 -11.93621 -11.70024 -11.62685 -11.34170 -10.72037 -10.61640 -10.49099 -10.20678 -9.64161 -9.49478 -9.29754 -8.94365 -8.68738 -8.47239 -7.25697 -6.40563 -3.32599 1.40679 1.64243 2.38512 2.42175 2.47449 2.88222 3.33589 3.39032 3.58917 4.07927 4.23316 4.36540 4.51798 4.62748 4.69321 4.70513 4.90390 4.97146 5.16774 5.31832 5.32524 5.34803 5.51577 5.68429 5.70326 6.04401 6.09899 6.12915 6.25250 6.30915 6.42015 6.81609 6.97076 7.29467 7.31664 8.03671 8.15754 8.88795 9.40195 10.23819 11.12005 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.039900 B = 0.002870 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.594192 B = 9753.332349 C = 9796.761370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.598 5.598 3 C 0.498 3.502 4 O -0.510 6.510 5 C 0.117 3.883 6 N -0.353 5.353 7 C 0.072 3.928 8 C -0.185 4.185 9 Cl -0.046 7.046 10 C 0.058 3.942 11 N -0.248 5.248 12 C 0.101 3.899 13 C 0.112 3.888 14 N -0.620 5.620 15 C -0.307 4.307 16 H 0.085 0.915 17 C -0.023 4.023 18 N -0.930 5.930 19 Si 1.071 2.929 20 H -0.293 1.293 21 H -0.292 1.292 22 H -0.287 1.287 23 C 0.092 3.908 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.183 0.817 30 H 0.191 0.809 31 H 0.125 0.875 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.129 26.424 -2.438 27.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.333 5.333 3 C 0.283 3.717 4 O -0.384 6.384 5 C -0.008 4.008 6 N -0.135 5.135 7 C -0.075 4.075 8 C -0.224 4.224 9 Cl -0.018 7.018 10 C -0.130 4.130 11 N -0.068 5.068 12 C -0.002 4.002 13 C -0.016 4.016 14 N -0.348 5.348 15 C -0.433 4.433 16 H 0.103 0.897 17 C -0.222 4.222 18 N -0.572 5.572 19 Si 0.903 3.097 20 H -0.220 1.220 21 H -0.220 1.220 22 H -0.214 1.214 23 C -0.035 4.035 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.146 0.854 28 H 0.137 0.863 29 H 0.200 0.800 30 H 0.208 0.792 31 H 0.143 0.857 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.996 24.726 -0.168 25.227 hybrid contribution 0.344 1.121 -2.382 2.655 sum -4.653 25.847 -2.550 26.386 Atomic orbital electron populations 1.21929 0.79508 1.03550 1.02468 1.47909 1.06993 1.05738 1.72614 1.20395 0.88489 0.84943 0.77871 1.90798 1.13249 1.86583 1.47809 1.21676 0.89453 0.83222 1.06422 1.47887 1.25643 1.18759 1.21242 1.22197 0.99805 0.89259 0.96254 1.20734 1.03636 0.96354 1.01684 1.98322 1.91453 1.34400 1.77640 1.23932 1.00457 0.93015 0.95563 1.77679 0.99875 1.16565 1.12694 1.23684 0.97876 0.79313 0.99373 1.22744 0.98768 0.86274 0.93764 1.45684 1.79773 1.04090 1.05243 1.20113 1.42325 0.79148 1.01683 0.89713 1.25773 0.99624 0.94324 1.02451 1.70921 1.47380 1.09779 1.29078 0.83689 0.76185 0.73930 0.75865 1.22043 1.22021 1.21407 1.23185 0.97752 0.88033 0.94507 0.91889 0.91390 0.89698 0.85448 0.86332 0.79961 0.79226 0.85713 0.93255 0.94226 0.92782 0.93208 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 8.92 59.85 0.53 1.14 16 2 N -0.60 -7.90 3.11 -173.55 -0.54 -8.44 16 3 C 0.50 6.70 7.71 -10.98 -0.08 6.62 16 4 O -0.51 -9.38 15.23 5.56 0.08 -9.29 16 5 C 0.12 0.99 5.54 -5.19 -0.03 0.96 16 6 N -0.35 -3.88 3.40 -62.50 -0.21 -4.09 16 7 C 0.07 0.65 11.43 -17.16 -0.20 0.45 16 8 C -0.19 -1.87 6.65 -39.97 -0.27 -2.13 16 9 Cl -0.05 -0.41 29.30 -51.86 -1.52 -1.93 16 10 C 0.06 0.65 12.02 -17.34 -0.21 0.44 16 11 N -0.25 -3.38 11.65 30.64 0.36 -3.02 16 12 C 0.10 1.79 4.57 -67.67 -0.31 1.48 16 13 C 0.11 2.15 8.24 -8.50 -0.07 2.08 16 14 N -0.62 -14.97 3.70 -184.61 -0.68 -15.65 16 15 C -0.31 -8.76 11.08 -15.06 -0.17 -8.93 16 16 H 0.09 2.55 8.05 -52.49 -0.42 2.13 16 17 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 18 N -0.93 -29.10 13.70 55.49 0.76 -28.34 16 19 Si 1.07 26.40 25.13 -169.99 -4.27 22.13 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.29 -6.94 6.65 56.52 0.38 -6.57 16 22 H -0.29 -6.41 6.13 56.52 0.35 -6.07 16 23 C 0.09 1.86 5.13 -8.37 -0.04 1.82 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.33 6.44 -51.93 -0.33 -0.01 16 26 H 0.08 0.85 6.17 -51.93 -0.32 0.53 16 27 H 0.13 0.55 7.33 -51.93 -0.38 0.17 16 28 H 0.12 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.19 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.13 2.47 7.29 -51.93 -0.38 2.09 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.69 6.97 -51.93 -0.36 0.33 16 34 H 0.26 8.09 8.73 -40.82 -0.36 7.74 16 35 H 0.05 0.93 6.16 -51.93 -0.32 0.61 16 36 H 0.06 1.19 4.65 -51.93 -0.24 0.95 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -36.83 314.20 -6.33 -43.16 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -4.10 Total: -2.42 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.93 Total: 3.17 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.32 Total: -59.55 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.27 Total: 22.13 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.52 Total: -1.93 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.83 -6.33 -43.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043982931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.771 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds