Wall clock time and date at job start Tue Mar 31 2020 03:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00385 * 2 1 4 4 O 1.21280 * 120.00492 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99687 * 0.02562 * 3 2 1 6 6 N 1.46494 * 109.46874 * 179.97438 * 5 3 2 7 7 C 1.35049 * 126.03564 * 124.99819 * 6 5 3 8 8 C 1.35378 * 107.72819 * 179.97438 * 7 6 5 9 9 Cl 1.73597 * 126.04346 * 179.97438 * 8 7 6 10 10 C 1.39930 * 107.90536 * 0.02562 * 8 7 6 11 11 N 1.30847 * 108.21545 * 359.75212 * 10 8 7 12 12 C 1.46499 * 119.99937 * 180.02562 * 2 1 3 13 13 C 1.53499 * 114.20527 * 59.99818 * 12 2 1 14 14 N 1.47066 * 87.98642 * 220.14732 * 13 12 2 15 15 C 1.36935 * 136.05905 * 207.08539 * 14 13 12 16 16 H 1.07996 * 120.00461 * 6.76058 * 15 14 13 17 17 C 1.38816 * 119.99877 * 186.76278 * 15 14 13 18 18 N 1.31618 * 119.99884 * 172.25761 * 17 15 14 19 19 Si 1.86798 * 120.00153 * 352.25282 * 17 15 14 20 20 H 1.48497 * 109.47359 * 175.36223 * 19 17 15 21 21 H 1.48503 * 109.47030 * 295.36478 * 19 17 15 22 22 H 1.48505 * 109.46945 * 55.36328 * 19 17 15 23 23 C 1.47070 * 87.88468 * 27.34150 * 14 13 12 24 24 H 1.09003 * 109.46861 * 269.99563 * 1 2 3 25 25 H 1.08999 * 109.47091 * 29.99510 * 1 2 3 26 26 H 1.08998 * 109.47582 * 149.99539 * 1 2 3 27 27 H 1.08997 * 109.46845 * 299.99691 * 5 3 2 28 28 H 1.08999 * 109.47327 * 59.99287 * 5 3 2 29 29 H 1.08002 * 126.13646 * 359.94084 * 7 6 5 30 30 H 1.07997 * 125.89039 * 179.97438 * 10 8 7 31 31 H 1.08993 * 113.28511 * 193.06317 * 12 2 1 32 32 H 1.09001 * 113.46838 * 105.36625 * 13 12 2 33 33 H 1.08996 * 113.52140 * 334.93417 * 13 12 2 34 34 H 0.97004 * 120.00412 * 4.87236 * 18 17 15 35 35 H 1.09004 * 113.46535 * 87.44030 * 23 14 13 36 36 H 1.08996 * 113.46991 * 217.87726 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3374 3.5857 0.0011 7 6 2.3777 4.5970 -0.8931 8 6 3.3980 5.4155 -0.5440 9 17 3.8739 6.8650 -1.3724 10 6 4.0017 4.8859 0.6018 11 7 3.3637 3.7922 0.9320 12 6 2.1975 -1.2687 -0.0006 13 6 1.9059 -2.1632 -1.2134 14 7 1.9168 -3.3161 -0.3004 15 6 2.1883 -4.6542 -0.4050 16 1 2.5822 -5.0548 -1.3272 17 6 1.9570 -5.4957 0.6745 18 7 2.0717 -6.7989 0.5294 19 14 1.4834 -4.7788 2.3331 20 1 1.1844 -5.8813 3.2819 21 1 2.6078 -3.9640 2.8595 22 1 0.2813 -3.9209 2.1765 23 6 1.5015 -2.4006 0.7731 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 0.7585 2.5302 -0.8892 28 1 0.7590 2.5299 0.8907 29 1 1.7152 4.7288 -1.7358 30 1 4.8461 5.3089 1.1257 31 1 3.2575 -1.1543 0.2258 32 1 2.7143 -2.1807 -1.9443 33 1 0.9321 -1.9778 -1.6666 34 1 2.3859 -7.1676 -0.3110 35 1 0.4208 -2.2771 0.8443 36 1 1.9654 -2.6203 1.7346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043982931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:57 Heat of formation + Delta-G solvation = 95.494373 kcal Electronic energy + Delta-G solvation = -21463.286092 eV Core-core repulsion = 18012.413364 eV Total energy + Delta-G solvation = -3450.872728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.094 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.34295 -41.34315 -39.59976 -37.33485 -36.12203 -34.61253 -34.12611 -31.09760 -30.16383 -28.40137 -27.87081 -27.08489 -24.66598 -22.69040 -22.18669 -21.43623 -20.18596 -19.61246 -18.62974 -18.29629 -17.48519 -17.11364 -16.97191 -16.03530 -15.73893 -15.53369 -15.28061 -15.15922 -14.70191 -14.28973 -14.10696 -13.78289 -13.63753 -13.45084 -13.26737 -13.22767 -13.04232 -12.65766 -12.36685 -12.33044 -12.24303 -11.48191 -11.43844 -11.23296 -11.13917 -11.04157 -10.47050 -9.65005 -9.40578 -9.26043 -8.71227 -5.54129 0.69489 0.98948 1.35339 1.46069 1.46490 1.63331 1.65652 1.73513 1.93829 2.50026 2.90816 3.18042 3.34778 3.48954 3.65332 3.84997 4.03639 4.05741 4.15231 4.19370 4.32009 4.46871 4.52380 4.55086 4.62894 4.64440 4.75609 5.00499 5.02878 5.10403 5.35614 5.48597 5.80856 5.88747 6.33505 6.54639 6.63393 7.05471 7.25240 8.17646 8.84148 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.039900 B = 0.002870 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.594192 B = 9753.332349 C = 9796.761370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.595 5.595 3 C 0.494 3.506 4 O -0.570 6.570 5 C 0.121 3.879 6 N -0.361 5.361 7 C 0.086 3.914 8 C -0.204 4.204 9 Cl -0.040 7.040 10 C 0.050 3.950 11 N -0.302 5.302 12 C 0.124 3.876 13 C 0.115 3.885 14 N -0.656 5.656 15 C -0.294 4.294 16 H 0.051 0.949 17 C -0.083 4.083 18 N -0.967 5.967 19 Si 1.109 2.891 20 H -0.303 1.303 21 H -0.284 1.284 22 H -0.245 1.245 23 C 0.091 3.909 24 H 0.079 0.921 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.182 0.818 28 H 0.149 0.851 29 H 0.225 0.775 30 H 0.202 0.798 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.247 0.753 35 H 0.081 0.919 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 29.849 -2.546 31.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.328 5.328 3 C 0.282 3.718 4 O -0.448 6.448 5 C -0.002 4.002 6 N -0.143 5.143 7 C -0.061 4.061 8 C -0.243 4.243 9 Cl -0.012 7.012 10 C -0.137 4.137 11 N -0.122 5.122 12 C 0.018 3.982 13 C -0.011 4.011 14 N -0.385 5.385 15 C -0.421 4.421 16 H 0.068 0.932 17 C -0.274 4.274 18 N -0.612 5.612 19 Si 0.934 3.066 20 H -0.231 1.231 21 H -0.212 1.212 22 H -0.169 1.169 23 C -0.035 4.035 24 H 0.097 0.903 25 H 0.137 0.863 26 H 0.094 0.906 27 H 0.199 0.801 28 H 0.166 0.834 29 H 0.242 0.758 30 H 0.218 0.782 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.977 28.229 -0.306 29.336 hybrid contribution 1.301 0.161 -2.487 2.811 sum -6.676 28.390 -2.792 29.298 Atomic orbital electron populations 1.22341 0.76156 1.05717 1.04268 1.47856 1.08765 1.03932 1.72237 1.21324 0.88075 0.86372 0.76070 1.90787 1.16170 1.87494 1.50334 1.22029 0.88524 0.79278 1.10387 1.48109 1.25530 1.19619 1.21087 1.22864 0.99340 0.87826 0.96108 1.20908 1.04365 0.97140 1.01847 1.98322 1.91508 1.34038 1.77373 1.24253 1.00634 0.92665 0.96139 1.77602 1.01830 1.17912 1.14901 1.22822 0.96733 0.81320 0.97278 1.22920 0.99840 0.84562 0.93789 1.45697 1.80597 1.03537 1.08648 1.19947 1.40334 0.81748 1.00099 0.93151 1.27135 1.00226 0.94045 1.06042 1.71028 1.50352 1.11308 1.28470 0.83273 0.77876 0.73798 0.71647 1.23061 1.21157 1.16913 1.23376 0.99348 0.87620 0.93122 0.90292 0.86260 0.90598 0.80127 0.83386 0.75819 0.78163 0.88647 0.94456 0.90951 0.94399 0.90133 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 8.92 127.77 1.14 1.80 16 2 N -0.59 -13.50 3.11 -821.39 -2.56 -16.06 16 3 C 0.49 11.76 7.71 87.66 0.68 12.43 16 4 O -0.57 -20.56 15.23 -3.03 -0.05 -20.61 16 5 C 0.12 1.42 5.54 85.64 0.47 1.89 16 6 N -0.36 -6.72 3.40 -351.66 -1.19 -7.92 16 7 C 0.09 1.22 11.43 83.54 0.95 2.17 16 8 C -0.20 -3.68 6.65 22.02 0.15 -3.53 16 9 Cl -0.04 -0.64 29.30 -2.72 -0.08 -0.72 16 10 C 0.05 1.08 12.02 85.25 1.02 2.11 16 11 N -0.30 -7.87 11.65 -56.98 -0.66 -8.54 16 12 C 0.12 4.19 4.57 45.55 0.21 4.39 16 13 C 0.12 4.27 8.24 83.18 0.69 4.96 16 14 N -0.66 -31.34 3.70 -737.97 -2.73 -34.07 16 15 C -0.29 -17.22 11.08 84.03 0.93 -16.28 16 16 H 0.05 3.20 8.05 -2.91 -0.02 3.18 16 17 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 18 N -0.97 -62.71 13.70 21.65 0.30 -62.41 16 19 Si 1.11 52.90 25.13 68.60 1.72 54.63 16 20 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 21 H -0.28 -13.03 6.65 99.48 0.66 -12.37 16 22 H -0.24 -9.87 6.13 99.48 0.61 -9.26 16 23 C 0.09 3.46 5.13 83.27 0.43 3.89 16 24 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.12 0.21 6.44 -2.39 -0.02 0.19 16 26 H 0.08 1.09 6.17 -2.39 -0.01 1.08 16 27 H 0.18 0.14 7.33 -2.39 -0.02 0.12 16 28 H 0.15 0.94 8.11 -2.39 -0.02 0.92 16 29 H 0.23 1.03 8.06 -2.91 -0.02 1.00 16 30 H 0.20 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.10 3.82 7.29 -2.39 -0.02 3.80 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 2.26 6.97 -2.39 -0.02 2.25 16 34 H 0.25 16.09 8.73 -92.71 -0.81 15.29 16 35 H 0.08 2.63 6.16 -2.38 -0.01 2.62 16 36 H 0.04 1.76 4.65 -2.39 -0.01 1.75 16 Total: -1.00 -87.17 314.20 2.82 -84.35 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 0.93 Total: 2.00 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 7.13 Total: 9.35 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -6.85 Total: -129.00 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 52.90 SS G_CDS: 1.72 Total: 54.63 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -87.17 2.82 -84.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043982931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.842 kcal (2) G-P(sol) polarization free energy of solvation -87.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds