Wall clock time and date at job start Tue Mar 31 2020 03:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48498 * 109.47190 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46596 * 120.00402 * 3 2 1 6 6 H 1.48499 * 109.47444 * 240.00577 * 3 2 1 7 7 C 1.38810 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 191.86631 * 7 2 1 9 9 N 1.36935 * 119.99821 * 11.86276 * 7 2 1 10 10 C 1.47152 * 120.98190 * 30.71630 * 9 7 2 11 11 C 1.53708 * 108.16476 * 129.43044 * 10 9 7 12 12 O 1.42966 * 109.14987 * 52.53686 * 11 10 9 13 13 C 1.42965 * 114.16187 * 297.29308 * 12 11 10 14 14 C 1.47154 * 120.98400 * 210.99548 * 9 7 2 15 15 H 1.08990 * 109.68236 * 110.75139 * 14 9 7 16 16 C 1.52997 * 109.67822 * 350.23451 * 14 9 7 17 17 N 1.46501 * 109.46971 * 60.43835 * 16 14 9 18 18 C 1.34783 * 119.99866 * 179.97438 * 17 16 14 19 19 O 1.21579 * 120.00082 * 359.97438 * 18 17 16 20 20 C 1.47620 * 119.99787 * 179.97438 * 18 17 16 21 21 N 1.31870 * 126.45837 * 0.02562 * 20 18 17 22 22 N 1.28467 * 110.15202 * 180.02562 * 21 20 18 23 23 H 0.97003 * 124.93244 * 179.97438 * 22 21 20 24 24 C 1.35728 * 110.13322 * 359.97438 * 22 21 20 25 25 C 1.35534 * 107.12008 * 359.72461 * 24 22 21 26 26 F 1.35100 * 127.24682 * 180.25160 * 25 24 22 27 27 H 0.97006 * 119.99822 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.67966 * 249.20724 * 10 9 7 29 29 H 1.09000 * 109.68305 * 9.76222 * 10 9 7 30 30 H 1.09001 * 109.66200 * 292.57136 * 11 10 9 31 31 H 1.08999 * 109.44872 * 172.37373 * 11 10 9 32 32 H 1.08994 * 109.51162 * 302.64941 * 13 12 11 33 33 H 1.09004 * 109.51066 * 182.50463 * 13 12 11 34 34 H 1.09003 * 109.46878 * 180.43339 * 16 14 9 35 35 H 1.08997 * 109.47745 * 300.43896 * 16 14 9 36 36 H 0.97000 * 120.00056 * 359.97438 * 17 16 14 37 37 H 1.08009 * 126.43868 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1038 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0730 -1.2122 0.1918 9 7 1.3475 -2.3752 -0.2448 10 6 0.1664 -2.4095 -1.1218 11 6 0.3715 -3.5257 -2.1585 12 8 0.6934 -4.7423 -1.4802 13 6 1.9146 -4.6932 -0.7383 14 6 1.7918 -3.6378 0.3667 15 1 1.0616 -3.9639 1.1071 16 6 3.1513 -3.4346 1.0384 17 7 3.0321 -2.4144 2.0830 18 6 4.1109 -2.0684 2.8132 19 8 5.1827 -2.6033 2.6053 20 6 3.9909 -1.0400 3.8655 21 7 2.8972 -0.3822 4.1973 22 7 3.1475 0.4391 5.1529 23 1 2.4963 1.0305 5.5619 24 6 4.4553 0.3593 5.5071 25 6 5.0271 -0.5785 4.7131 26 9 6.3156 -0.9846 4.7249 27 1 -0.4850 0.8401 0.0004 28 1 -0.7251 -2.6145 -0.5290 29 1 0.0580 -1.4510 -1.6294 30 1 1.1866 -3.2569 -2.8304 31 1 -0.5451 -3.6607 -2.7327 32 1 2.7352 -4.4287 -1.4050 33 1 2.1081 -5.6681 -0.2907 34 1 3.4806 -4.3735 1.4835 35 1 3.8791 -3.1099 0.2949 36 1 2.1769 -1.9879 2.2492 37 1 4.9468 0.9323 6.2795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051099487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:51 Heat of formation + Delta-G solvation = -12.811379 kcal Electronic energy + Delta-G solvation = -25057.357453 eV Core-core repulsion = 21173.451860 eV Total energy + Delta-G solvation = -3883.905593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.50511 -42.55628 -39.12743 -38.16626 -35.29717 -33.55582 -32.06137 -31.23194 -30.52340 -30.26027 -27.20840 -25.87928 -23.55734 -23.39509 -21.90570 -21.44139 -19.84608 -19.58056 -18.77380 -17.17038 -16.32718 -16.28333 -15.85454 -15.78838 -15.65385 -15.07760 -14.71088 -14.60105 -14.40615 -14.21574 -13.87775 -13.61342 -13.43101 -12.94554 -12.65464 -12.36287 -11.86701 -11.54082 -11.04027 -10.91011 -10.84921 -10.72669 -10.40588 -10.26023 -10.02013 -9.74869 -9.61996 -9.50126 -8.97538 -8.91695 -8.64003 -8.24763 -6.70598 -5.88333 -3.36703 1.62873 1.90196 2.69669 3.30766 3.34835 3.39550 3.57027 3.76855 4.33484 4.39395 4.55480 4.63873 4.85083 5.15582 5.19724 5.30194 5.48572 5.61674 5.75686 5.88355 6.03858 6.10205 6.17661 6.23864 6.33909 6.41009 6.54197 6.77324 6.80836 7.07878 7.08896 7.50182 7.67030 7.73178 7.88531 8.23982 8.31622 8.77471 9.08321 9.68822 10.27580 11.18327 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.006021 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.007352 B = 4649.147221 C = 5829.319716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.014 3.986 3 Si 0.896 3.104 4 H -0.291 1.291 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.134 3.866 17 N -0.676 5.676 18 C 0.592 3.408 19 O -0.547 6.547 20 C -0.021 4.021 21 N -0.216 5.216 22 N -0.373 5.373 23 H 0.455 0.545 24 C -0.046 4.046 25 C 0.032 3.968 26 F -0.103 7.103 27 H 0.255 0.745 28 H 0.030 0.970 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.423 0.577 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.380 -0.468 8.384 9.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.726 3.274 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.090 0.910 9 N -0.316 5.316 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.022 4.022 14 C 0.017 3.983 15 H 0.060 0.940 16 C 0.010 3.990 17 N -0.328 5.328 18 C 0.375 3.625 19 O -0.425 6.425 20 C -0.183 4.183 21 N -0.052 5.052 22 N -0.089 5.089 23 H 0.301 0.699 24 C -0.191 4.191 25 C 0.002 3.998 26 F -0.082 7.082 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.262 0.738 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.826 -0.808 7.917 8.445 hybrid contribution 0.887 1.818 0.548 2.096 sum 3.713 1.010 8.465 9.299 Atomic orbital electron populations 1.69979 1.05126 1.25647 1.53470 1.25068 0.95203 0.98074 1.00179 0.86463 0.78950 0.83620 0.78357 1.21663 1.20835 1.20992 1.19164 0.91521 0.83434 1.44317 0.90995 1.44095 1.32918 1.02565 1.52060 1.21493 0.88965 0.96939 0.90679 1.23429 0.99146 0.86365 0.95400 1.87799 1.41231 1.35608 1.66479 1.22859 0.86903 0.98718 0.93763 1.21438 0.93724 0.89392 0.93734 0.94021 1.21242 0.97865 0.90175 0.89679 1.45885 1.12752 1.40162 1.33958 1.16706 0.84617 0.80888 0.80301 1.90780 1.27543 1.54828 1.69322 1.22332 0.90097 1.03381 1.02520 1.73844 1.24714 1.03295 1.03370 1.43075 1.08827 1.30773 1.26233 0.69940 1.22589 0.86614 1.04474 1.05432 1.17201 0.81125 1.00672 1.00764 1.91511 1.31604 1.89316 1.95733 0.93509 0.95219 0.89012 0.94065 0.90304 0.93429 0.89856 0.91931 0.91164 0.73788 0.78809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 11.17 55.49 0.62 -23.63 16 2 C 0.01 0.38 5.03 -17.43 -0.09 0.29 16 3 Si 0.90 21.25 29.57 -169.99 -5.03 16.22 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.26 -6.41 7.05 -15.06 -0.11 -6.51 16 8 H 0.07 1.86 5.80 -52.49 -0.30 1.56 16 9 N -0.59 -13.69 3.03 -164.05 -0.50 -14.19 16 10 C 0.14 3.29 5.41 -3.32 -0.02 3.27 16 11 C 0.03 0.67 7.00 37.53 0.26 0.93 16 12 O -0.39 -7.65 10.74 -35.23 -0.38 -8.03 16 13 C 0.06 1.00 6.29 37.31 0.23 1.24 16 14 C 0.12 2.46 3.21 -67.42 -0.22 2.24 16 15 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 16 C 0.13 2.55 4.45 -4.04 -0.02 2.53 16 17 N -0.68 -13.64 3.76 -61.32 -0.23 -13.87 16 18 C 0.59 12.20 7.82 -12.43 -0.10 12.11 16 19 O -0.55 -12.40 16.67 5.30 0.09 -12.31 16 20 C -0.02 -0.38 7.13 -82.74 -0.59 -0.97 16 21 N -0.22 -3.60 11.91 33.43 0.40 -3.20 16 22 N -0.37 -4.32 6.86 30.63 0.21 -4.11 16 23 H 0.45 3.25 8.96 -190.44 -1.71 1.54 16 24 C -0.05 -0.51 12.06 -16.79 -0.20 -0.72 16 25 C 0.03 0.52 8.03 -39.27 -0.32 0.20 16 26 F -0.10 -1.75 17.03 2.25 0.04 -1.71 16 27 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 2.29 6.33 -51.93 -0.33 1.96 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 36 H 0.42 9.04 7.02 -40.82 -0.29 8.75 16 37 H 0.19 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 314.59 15.07 4.74 4.74 Total: -1.00 -32.08 314.59 -6.73 -38.80 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.54 Total: 6.66 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: -1.15 Total: 14.61 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.50 Total: -59.00 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.29 Total: -20.33 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.08 -6.73 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051099487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.992 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds