Wall clock time and date at job start Tue Mar 31 2020 04:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99738 * 2 1 4 4 H 1.48501 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47392 * 299.99945 * 3 2 1 6 6 H 1.48501 * 109.46969 * 60.00321 * 3 2 1 7 7 C 1.38807 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00174 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.47018 * 125.64797 * 359.97438 * 9 7 2 11 11 C 1.54322 * 107.27336 * 178.97600 * 10 9 7 12 12 H 1.09002 * 110.71963 * 96.17078 * 11 10 9 13 13 O 1.42901 * 110.71944 * 219.26540 * 11 10 9 14 14 C 1.55157 * 102.94206 * 337.80559 * 11 10 9 15 15 H 1.08997 * 111.00429 * 277.43204 * 14 11 10 16 16 N 1.46502 * 111.00273 * 153.57243 * 14 11 10 17 17 C 1.34778 * 119.99724 * 155.00020 * 16 14 11 18 18 O 1.21288 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99962 * 180.02562 * 17 16 14 20 20 C 1.53001 * 109.47091 * 180.02562 * 19 17 16 21 21 H 1.09000 * 110.61256 * 303.38902 * 20 19 17 22 22 C 1.54263 * 110.69306 * 66.45468 * 20 19 17 23 23 O 1.45591 * 106.37160 * 117.32868 * 22 20 19 24 24 C 1.34525 * 109.63848 * 21.26664 * 23 22 20 25 25 O 1.20822 * 126.43052 * 147.15670 * 24 23 22 26 26 C 1.51787 * 107.13797 * 327.17644 * 24 23 22 27 27 C 1.47426 * 125.65098 * 180.02562 * 9 7 2 28 28 H 0.97002 * 120.00386 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.88222 * 59.56024 * 10 9 7 30 30 H 1.09005 * 110.01447 * 298.46604 * 10 9 7 31 31 H 0.96689 * 114.00373 * 296.15847 * 13 11 10 32 32 H 0.96998 * 120.00124 * 335.00763 * 16 14 11 33 33 H 1.09006 * 109.47000 * 300.00308 * 19 17 16 34 34 H 1.08998 * 109.47115 * 60.00051 * 19 17 16 35 35 H 1.09003 * 110.07481 * 236.55828 * 22 20 19 36 36 H 1.09000 * 110.07443 * 358.10348 * 22 20 19 37 37 H 1.09008 * 110.60814 * 272.11768 * 26 24 23 38 38 H 1.09000 * 110.61370 * 149.13936 * 26 24 23 39 39 H 1.08998 * 110.36876 * 322.93757 * 27 9 7 40 40 H 1.09003 * 110.36123 * 85.25439 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0262 12 1 -0.6308 -4.4182 0.9812 13 8 -1.5660 -4.3154 -0.8744 14 6 0.8516 -4.6560 -0.6120 15 1 0.8557 -4.5960 -1.7003 16 7 1.0291 -6.0394 -0.1637 17 6 1.7588 -6.8987 -0.9023 18 8 2.2688 -6.5266 -1.9380 19 6 1.9410 -8.3219 -0.4415 20 6 2.8043 -9.0789 -1.4528 21 1 2.3602 -9.0326 -2.4471 22 6 4.2411 -8.5177 -1.4710 23 8 5.1112 -9.6035 -1.0425 24 6 4.4896 -10.7818 -1.2297 25 8 5.0133 -11.8312 -1.5197 26 6 3.0067 -10.5451 -1.0087 27 6 1.9335 -3.7311 -0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5581 -2.0521 -0.8827 30 1 -0.5561 -2.0841 0.9014 31 1 -2.3948 -3.9205 -0.5713 32 1 0.6215 -6.3369 0.6647 33 1 2.4318 -8.3287 0.5318 34 1 0.9674 -8.8052 -0.3608 35 1 4.5065 -8.2014 -2.4798 36 1 4.3235 -7.6778 -0.7812 37 1 2.7516 -10.6658 0.0442 38 1 2.4141 -11.2188 -1.6277 39 1 2.8328 -3.7405 -0.6164 40 1 2.1669 -4.0418 1.0179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076884466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:08 Heat of formation + Delta-G solvation = -137.757606 kcal Electronic energy + Delta-G solvation = -24268.433180 eV Core-core repulsion = 20470.277066 eV Total energy + Delta-G solvation = -3798.156114 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29534 -39.80671 -38.11515 -37.61612 -35.16689 -34.48086 -34.14224 -31.81543 -29.58603 -28.44876 -27.63442 -26.70530 -24.44795 -22.03905 -21.64228 -20.68044 -20.40673 -20.09130 -17.67460 -17.30186 -17.20360 -16.91142 -16.57891 -16.49431 -15.81567 -15.35764 -14.92399 -14.49554 -14.19310 -13.82183 -13.71031 -13.43254 -13.22786 -13.03580 -12.76567 -12.52625 -12.27733 -12.14164 -11.89686 -11.61024 -11.43682 -11.32939 -10.94993 -10.87325 -10.72695 -10.52085 -10.19211 -10.00574 -9.91079 -9.89416 -9.40254 -8.95243 -8.70259 -6.98514 -5.82618 -3.17472 1.62545 2.60637 3.08838 3.11643 3.34996 3.41160 3.43301 3.67175 3.89494 4.22856 4.33120 4.38630 4.54235 4.72311 4.91302 4.93849 5.10055 5.11854 5.21776 5.27282 5.37321 5.47566 5.50484 5.57956 5.63371 5.74164 5.98626 6.03473 6.39880 6.46442 6.50988 6.77436 7.13899 7.24827 7.39492 7.53701 7.67427 8.03307 8.10461 8.23274 9.08688 9.68833 10.31019 11.29214 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.003046 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.832403 B = 9189.130924 C =10078.332185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.564 6.564 14 C 0.137 3.863 15 H 0.106 0.894 16 N -0.713 5.713 17 C 0.510 3.490 18 O -0.538 6.538 19 C -0.134 4.134 20 C -0.105 4.105 21 H 0.109 0.891 22 C 0.067 3.933 23 O -0.358 6.358 24 C 0.488 3.512 25 O -0.453 6.453 26 C -0.184 4.184 27 C 0.131 3.869 28 H 0.253 0.747 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.377 0.623 32 H 0.398 0.602 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 -17.890 2.025 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.100 0.900 9 N -0.328 5.328 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.369 6.369 14 C 0.032 3.968 15 H 0.124 0.876 16 N -0.363 5.363 17 C 0.295 3.705 18 O -0.415 6.415 19 C -0.175 4.175 20 C -0.124 4.124 21 H 0.127 0.873 22 C -0.007 4.007 23 O -0.276 6.276 24 C 0.328 3.672 25 O -0.335 6.335 26 C -0.222 4.222 27 C 0.003 3.997 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.224 0.776 32 H 0.232 0.768 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.068 0.932 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.208 -18.162 0.869 18.184 hybrid contribution -0.489 1.221 0.866 1.575 sum -0.281 -16.941 1.735 17.031 Atomic orbital electron populations 1.69923 1.04961 1.25183 1.57050 1.24821 0.95790 0.97841 1.01887 0.85992 0.78789 0.83390 0.77277 1.20370 1.21617 1.21688 1.19133 0.90592 0.82027 1.43996 0.90049 1.44247 1.01189 0.99910 1.87431 1.21833 0.85456 0.87801 1.02219 1.23458 0.85532 0.98591 0.91632 0.92528 1.86449 1.19501 1.77652 1.53317 1.22293 0.94475 0.78979 1.01103 0.87606 1.45935 1.52868 1.11550 1.25967 1.20493 0.78533 0.87212 0.84233 1.90739 1.48160 1.78748 1.23881 1.21781 1.02455 0.93050 1.00166 1.22158 0.96007 0.92633 1.01603 0.87290 1.24085 0.86638 0.87169 1.02801 1.87110 1.46043 1.17046 1.77425 1.23307 0.89145 0.83165 0.71594 1.90711 1.75028 1.27036 1.40722 1.23140 0.95401 0.97967 1.05721 1.21843 0.94837 0.85776 0.97242 0.93651 0.92110 0.93293 0.77563 0.76809 0.88094 0.87801 0.88665 0.87460 0.86434 0.87050 0.93175 0.95904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.17 10.31 55.49 0.57 -25.60 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.60 -14.75 3.39 -170.07 -0.58 -15.33 16 10 C 0.15 3.46 5.15 -3.07 -0.02 3.44 16 11 C 0.07 1.16 3.97 -24.90 -0.10 1.06 16 12 H 0.06 0.84 8.00 -51.93 -0.42 0.42 16 13 O -0.56 -9.09 13.39 -35.23 -0.47 -9.57 16 14 C 0.14 2.34 3.15 -65.78 -0.21 2.13 16 15 H 0.11 2.13 7.54 -51.93 -0.39 1.74 16 16 N -0.71 -8.72 5.20 -51.72 -0.27 -8.99 16 17 C 0.51 5.96 7.36 -10.99 -0.08 5.88 16 18 O -0.54 -8.43 14.75 5.55 0.08 -8.35 16 19 C -0.13 -0.89 4.93 -27.88 -0.14 -1.02 16 20 C -0.10 -0.76 2.75 -89.15 -0.24 -1.01 16 21 H 0.11 0.83 8.04 -51.93 -0.42 0.42 16 22 C 0.07 0.62 6.50 37.82 0.25 0.86 16 23 O -0.36 -3.99 11.07 -39.60 -0.44 -4.43 16 24 C 0.49 5.17 8.57 36.54 0.31 5.48 16 25 O -0.45 -6.34 18.00 -18.28 -0.33 -6.67 16 26 C -0.18 -1.14 6.58 -26.54 -0.17 -1.32 16 27 C 0.13 2.60 6.93 -2.52 -0.02 2.58 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.06 1.57 7.30 -51.93 -0.38 1.19 16 30 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 31 H 0.38 4.59 9.12 45.56 0.42 5.01 16 32 H 0.40 3.61 8.57 -40.82 -0.35 3.26 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.11 1.00 7.33 -51.93 -0.38 0.62 16 37 H 0.12 0.49 7.82 -51.92 -0.41 0.08 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -34.72 334.85 -6.87 -41.59 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.80 Total: 4.26 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -0.67 Total: 11.41 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.27 Total: -49.92 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -1.16 Total: -29.01 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.72 -6.87 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076884466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.164 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds