Wall clock time and date at job start Tue Mar 31 2020 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99738 * 2 1 4 4 H 1.48501 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47392 * 299.99945 * 3 2 1 6 6 H 1.48501 * 109.46969 * 60.00321 * 3 2 1 7 7 C 1.38807 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00174 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.47018 * 125.64797 * 359.97438 * 9 7 2 11 11 C 1.54322 * 107.27336 * 178.97600 * 10 9 7 12 12 H 1.09002 * 110.71963 * 96.17078 * 11 10 9 13 13 O 1.42901 * 110.71944 * 219.26540 * 11 10 9 14 14 C 1.55157 * 102.94206 * 337.80559 * 11 10 9 15 15 H 1.08997 * 111.00429 * 277.43204 * 14 11 10 16 16 N 1.46502 * 111.00273 * 153.57243 * 14 11 10 17 17 C 1.34778 * 119.99724 * 155.00020 * 16 14 11 18 18 O 1.21288 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99962 * 180.02562 * 17 16 14 20 20 C 1.53001 * 109.47091 * 180.02562 * 19 17 16 21 21 H 1.09000 * 110.61256 * 303.38902 * 20 19 17 22 22 C 1.54263 * 110.69306 * 66.45468 * 20 19 17 23 23 O 1.45591 * 106.37160 * 117.32868 * 22 20 19 24 24 C 1.34525 * 109.63848 * 21.26664 * 23 22 20 25 25 O 1.20822 * 126.43052 * 147.15670 * 24 23 22 26 26 C 1.51787 * 107.13797 * 327.17644 * 24 23 22 27 27 C 1.47426 * 125.65098 * 180.02562 * 9 7 2 28 28 H 0.97002 * 120.00386 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.88222 * 59.56024 * 10 9 7 30 30 H 1.09005 * 110.01447 * 298.46604 * 10 9 7 31 31 H 0.96689 * 114.00373 * 296.15847 * 13 11 10 32 32 H 0.96998 * 120.00124 * 335.00763 * 16 14 11 33 33 H 1.09006 * 109.47000 * 300.00308 * 19 17 16 34 34 H 1.08998 * 109.47115 * 60.00051 * 19 17 16 35 35 H 1.09003 * 110.07481 * 236.55828 * 22 20 19 36 36 H 1.09000 * 110.07443 * 358.10348 * 22 20 19 37 37 H 1.09008 * 110.60814 * 272.11768 * 26 24 23 38 38 H 1.09000 * 110.61370 * 149.13936 * 26 24 23 39 39 H 1.08998 * 110.36876 * 322.93757 * 27 9 7 40 40 H 1.09003 * 110.36123 * 85.25439 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4484 -4.0441 -0.0262 12 1 -0.6308 -4.4182 0.9812 13 8 -1.5660 -4.3154 -0.8744 14 6 0.8516 -4.6560 -0.6120 15 1 0.8557 -4.5960 -1.7003 16 7 1.0291 -6.0394 -0.1637 17 6 1.7588 -6.8987 -0.9023 18 8 2.2688 -6.5266 -1.9380 19 6 1.9410 -8.3219 -0.4415 20 6 2.8043 -9.0789 -1.4528 21 1 2.3602 -9.0326 -2.4471 22 6 4.2411 -8.5177 -1.4710 23 8 5.1112 -9.6035 -1.0425 24 6 4.4896 -10.7818 -1.2297 25 8 5.0133 -11.8312 -1.5197 26 6 3.0067 -10.5451 -1.0087 27 6 1.9335 -3.7311 -0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5581 -2.0521 -0.8827 30 1 -0.5561 -2.0841 0.9014 31 1 -2.3948 -3.9205 -0.5713 32 1 0.6215 -6.3369 0.6647 33 1 2.4318 -8.3287 0.5318 34 1 0.9674 -8.8052 -0.3608 35 1 4.5065 -8.2014 -2.4798 36 1 4.3235 -7.6778 -0.7812 37 1 2.7516 -10.6658 0.0442 38 1 2.4141 -11.2188 -1.6277 39 1 2.8328 -3.7405 -0.6164 40 1 2.1669 -4.0418 1.0179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076884466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:07 Heat of formation + Delta-G solvation = -166.064231 kcal Electronic energy + Delta-G solvation = -24269.660648 eV Core-core repulsion = 20470.277066 eV Total energy + Delta-G solvation = -3799.383582 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.06612 -40.89679 -39.44327 -38.57129 -36.65652 -35.56307 -35.10729 -33.60651 -30.64873 -29.74338 -28.85110 -27.88811 -26.21517 -23.01209 -22.36424 -22.27185 -21.76089 -21.05411 -19.09690 -18.42940 -18.27349 -17.79478 -17.76055 -17.34202 -17.19060 -16.46189 -16.25779 -15.75953 -15.67590 -15.06362 -14.71516 -14.46990 -14.35171 -14.26324 -14.01016 -13.72946 -13.62560 -13.15692 -13.05262 -12.91299 -12.77415 -12.69395 -12.52314 -12.05873 -12.02745 -11.89500 -11.51365 -11.45012 -11.33819 -11.05559 -10.78310 -10.70675 -10.08347 -8.96408 -7.89636 -5.26347 0.84227 1.45532 1.46725 1.56762 1.71389 2.11830 2.37440 2.47627 3.03017 3.14796 3.27121 3.32433 3.58234 3.63930 3.70897 3.89235 4.04850 4.10533 4.24018 4.41058 4.43590 4.49172 4.57551 4.60169 4.71594 4.76841 4.84928 4.90487 5.06692 5.11444 5.37776 5.44776 5.52785 5.67183 5.73324 6.13840 6.35241 6.63619 6.87513 7.04826 7.34838 7.69893 8.31383 9.20136 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.003046 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.832403 B = 9189.130924 C =10078.332185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.624 5.624 10 C 0.159 3.841 11 C 0.091 3.909 12 H 0.096 0.904 13 O -0.570 6.570 14 C 0.154 3.846 15 H 0.071 0.929 16 N -0.702 5.702 17 C 0.505 3.495 18 O -0.584 6.584 19 C -0.120 4.120 20 C -0.099 4.099 21 H 0.104 0.896 22 C 0.063 3.937 23 O -0.379 6.379 24 C 0.481 3.519 25 O -0.498 6.498 26 C -0.162 4.162 27 C 0.130 3.870 28 H 0.249 0.751 29 H 0.018 0.982 30 H 0.024 0.976 31 H 0.395 0.605 32 H 0.419 0.581 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.151 0.849 38 H 0.131 0.869 39 H 0.034 0.966 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 -19.827 3.576 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.033 3.967 11 C 0.030 3.970 12 H 0.113 0.887 13 O -0.377 6.377 14 C 0.046 3.954 15 H 0.089 0.911 16 N -0.354 5.354 17 C 0.294 3.706 18 O -0.463 6.463 19 C -0.159 4.159 20 C -0.118 4.118 21 H 0.123 0.877 22 C -0.010 4.010 23 O -0.298 6.298 24 C 0.324 3.676 25 O -0.383 6.383 26 C -0.200 4.200 27 C 0.004 3.996 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.246 0.754 32 H 0.257 0.743 33 H 0.149 0.851 34 H 0.160 0.840 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.169 0.831 38 H 0.149 0.851 39 H 0.052 0.948 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.675 -20.137 2.454 20.297 hybrid contribution -0.171 1.835 0.340 1.874 sum -0.846 -18.302 2.795 18.534 Atomic orbital electron populations 1.70127 1.06134 1.25415 1.58026 1.25627 0.96709 1.00933 1.02263 0.85015 0.78171 0.79368 0.76797 1.19180 1.22045 1.21470 1.19473 0.91014 0.83528 1.43375 0.90062 1.44531 1.02306 1.00979 1.87327 1.21643 0.84358 0.91739 0.98968 1.23167 0.85913 0.94274 0.93626 0.88669 1.86417 1.20145 1.77460 1.53699 1.21669 0.93375 0.81426 0.98883 0.91076 1.45716 1.53353 1.09335 1.26995 1.21482 0.76960 0.88934 0.83271 1.90740 1.49711 1.79856 1.26018 1.21829 1.04578 0.88828 1.00685 1.22129 0.94427 0.93299 1.01994 0.87735 1.24137 0.88069 0.86804 1.02034 1.87081 1.47569 1.17821 1.77304 1.24091 0.91097 0.82255 0.70137 1.90684 1.76382 1.28466 1.42776 1.23122 0.91655 0.97089 1.08110 1.21971 0.95038 0.84496 0.98130 0.94194 0.96415 0.95759 0.75448 0.74331 0.85108 0.83955 0.89962 0.87569 0.83093 0.85069 0.94790 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.31 10.31 21.65 0.22 -55.09 16 2 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 3 Si 0.98 45.16 29.55 68.60 2.03 47.18 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.25 -13.58 10.28 84.03 0.86 -12.72 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -31.18 3.39 -691.98 -2.35 -33.53 16 10 C 0.16 7.33 5.15 86.73 0.45 7.78 16 11 C 0.09 2.94 3.97 31.78 0.13 3.07 16 12 H 0.10 2.43 8.00 -2.39 -0.02 2.41 16 13 O -0.57 -17.33 13.39 -148.98 -2.00 -19.32 16 14 C 0.15 5.07 3.15 46.39 0.15 5.22 16 15 H 0.07 2.89 7.54 -2.39 -0.02 2.88 16 16 N -0.70 -14.88 5.20 -435.94 -2.27 -17.15 16 17 C 0.50 10.34 7.36 87.66 0.65 10.99 16 18 O -0.58 -17.78 14.75 -3.06 -0.05 -17.83 16 19 C -0.12 -0.98 4.93 29.85 0.15 -0.84 16 20 C -0.10 -1.12 2.75 -9.84 -0.03 -1.14 16 21 H 0.10 1.33 8.04 -2.39 -0.02 1.31 16 22 C 0.06 1.10 6.50 72.41 0.47 1.57 16 23 O -0.38 -8.16 11.07 -54.74 -0.61 -8.77 16 24 C 0.48 9.53 8.57 71.58 0.61 10.14 16 25 O -0.50 -13.80 18.00 21.53 0.39 -13.41 16 26 C -0.16 -1.36 6.58 30.72 0.20 -1.16 16 27 C 0.13 5.13 6.93 86.86 0.60 5.73 16 28 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.02 0.95 7.30 -2.39 -0.02 0.94 16 30 H 0.02 1.22 7.51 -2.38 -0.02 1.20 16 31 H 0.40 8.87 9.12 -74.06 -0.68 8.20 16 32 H 0.42 5.51 8.57 -92.71 -0.79 4.72 16 33 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.11 1.85 7.33 -2.39 -0.02 1.83 16 37 H 0.15 0.36 7.82 -2.38 -0.02 0.34 16 38 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -80.95 334.85 -0.31 -81.25 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -0.39 Total: 11.03 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 4.70 Total: 25.63 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.39 Total: -105.76 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -2.26 Total: -59.33 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -80.95 -0.31 -81.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076884466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.809 kcal (2) G-P(sol) polarization free energy of solvation -80.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds