Wall clock time and date at job start Tue Mar 31 2020 03:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.63793 * 2 1 4 4 C 1.54328 * 110.71793 * 236.66692 * 2 1 3 5 5 N 1.47020 * 107.26685 * 219.44384 * 4 2 1 6 6 C 1.34786 * 125.64442 * 178.97586 * 5 4 2 7 7 O 1.21279 * 119.99624 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99749 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.47002 * 344.99862 * 8 6 5 10 10 F 1.39898 * 109.46776 * 105.00033 * 8 6 5 11 11 C 1.52991 * 109.46993 * 224.99934 * 8 6 5 12 12 F 1.39908 * 109.47444 * 60.00021 * 11 8 6 13 13 F 1.39902 * 109.47368 * 180.02562 * 11 8 6 14 14 F 1.39902 * 109.47617 * 300.00175 * 11 8 6 15 15 C 1.47461 * 108.72609 * 358.97253 * 5 4 2 16 16 C 1.54913 * 104.81186 * 24.07620 * 15 5 4 17 17 H 1.08995 * 111.00823 * 81.13027 * 16 15 5 18 18 N 1.46499 * 111.00507 * 204.94864 * 16 15 5 19 19 C 1.36931 * 120.00122 * 270.41396 * 18 16 15 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00429 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 H 1.09000 * 109.47257 * 296.85483 * 1 2 3 28 28 H 1.08997 * 109.47346 * 56.85340 * 1 2 3 29 29 H 1.09000 * 109.47346 * 176.85631 * 1 2 3 30 30 H 1.08996 * 109.88108 * 338.85707 * 4 2 1 31 31 H 1.09000 * 109.87795 * 99.87219 * 4 2 1 32 32 H 1.08992 * 110.35226 * 265.25344 * 15 5 4 33 33 H 1.09004 * 110.40711 * 142.91662 * 15 5 4 34 34 H 0.97001 * 119.99790 * 90.40913 * 18 16 15 35 35 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2060 5 7 3.2444 -1.5519 -0.7365 6 6 3.9922 -2.3861 -1.4859 7 8 3.7196 -2.5601 -2.6547 8 6 5.1678 -3.1016 -0.8716 9 1 5.4208 -2.6341 0.0800 10 9 4.8370 -4.4441 -0.6584 11 6 6.3676 -3.0159 -1.8170 12 9 6.6984 -1.6734 -2.0303 13 9 7.4588 -3.6806 -1.2470 14 9 6.0429 -3.6159 -3.0384 15 6 3.4632 -1.2495 0.6901 16 6 2.0789 -0.7935 1.2151 17 1 1.4448 -1.6508 1.4406 18 7 2.2215 0.0735 2.3874 19 6 2.2521 -0.4722 3.6429 20 1 2.1717 -1.5418 3.7689 21 6 2.3866 0.3493 4.7537 22 7 2.4852 1.6529 4.6001 23 14 2.4363 -0.3958 6.4659 24 1 2.5913 0.6854 7.4719 25 1 1.1726 -1.1326 6.7219 26 1 3.5844 -1.3325 6.5651 27 1 -0.3634 0.4642 0.9168 28 1 -0.3634 0.5619 -0.8604 29 1 -0.3634 -1.0261 -0.0564 30 1 1.3129 -1.4784 -1.5751 31 1 2.3715 -0.1058 -1.9986 32 1 4.1935 -0.4479 0.8000 33 1 3.7952 -2.1416 1.2212 34 1 2.2941 1.0341 2.2741 35 1 2.5795 2.2269 5.3763 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082525507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:14 Heat of formation + Delta-G solvation = -234.098230 kcal Electronic energy + Delta-G solvation = -25199.344054 eV Core-core repulsion = 20731.693251 eV Total energy + Delta-G solvation = -4467.650803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.52819 -49.63052 -48.90100 -48.76342 -41.32817 -39.15367 -35.94738 -34.24027 -32.66575 -32.01490 -29.24487 -27.79401 -25.94895 -25.13662 -23.17482 -21.48984 -21.16222 -20.13779 -19.89901 -19.39585 -19.09875 -18.55189 -17.61549 -17.29088 -16.94915 -16.23383 -15.90527 -15.73214 -15.65284 -15.39166 -15.31491 -15.27322 -15.01717 -14.99593 -14.85994 -14.55065 -14.53178 -14.18274 -13.89283 -13.31235 -13.08361 -12.91945 -12.81860 -12.76102 -12.24166 -12.16006 -12.00495 -11.70846 -11.43533 -11.34705 -10.92238 -9.93722 -9.04290 -7.92789 -5.22386 0.70265 1.02144 1.49978 1.53840 1.54580 1.60147 2.16310 2.48374 2.59811 2.61117 2.86412 3.23947 3.38126 3.55752 3.61918 3.75838 3.88593 4.16134 4.32191 4.43900 4.53751 4.65042 4.82843 4.84829 4.92218 5.10621 5.12634 5.33694 5.46927 5.57826 6.07139 6.27866 6.51911 7.36922 8.07217 8.31096 9.29460 Molecular weight = 298.10amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.004430 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.415382 B = 6318.964964 C = 7294.422568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.590 5.590 6 C 0.505 3.495 7 O -0.539 6.539 8 C 0.043 3.957 9 H 0.176 0.824 10 F -0.157 7.157 11 C 0.451 3.549 12 F -0.167 7.167 13 F -0.163 7.163 14 F -0.168 7.168 15 C 0.065 3.935 16 C 0.171 3.829 17 H 0.068 0.932 18 N -0.717 5.717 19 C -0.243 4.243 20 H 0.080 0.920 21 C -0.064 4.064 22 N -0.964 5.964 23 Si 0.964 3.036 24 H -0.301 1.301 25 H -0.280 1.280 26 H -0.277 1.277 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.378 0.622 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 -7.222 -11.648 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 H 0.103 0.897 4 C -0.005 4.005 5 N -0.322 5.322 6 C 0.289 3.711 7 O -0.417 6.417 8 C 0.002 3.998 9 H 0.193 0.807 10 F -0.137 7.137 11 C 0.395 3.605 12 F -0.148 7.148 13 F -0.144 7.144 14 F -0.149 7.149 15 C -0.060 4.060 16 C 0.061 3.939 17 H 0.086 0.914 18 N -0.356 5.356 19 C -0.375 4.375 20 H 0.098 0.902 21 C -0.257 4.257 22 N -0.614 5.614 23 Si 0.794 3.206 24 H -0.228 1.228 25 H -0.207 1.207 26 H -0.203 1.203 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.211 0.789 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.719 -7.498 -12.161 14.763 hybrid contribution 0.386 0.099 0.997 1.074 sum 4.106 -7.399 -11.164 14.008 Atomic orbital electron populations 1.21634 0.92597 1.02388 1.02191 1.22440 0.97562 0.99387 0.92907 0.89665 1.22188 0.86583 0.94633 0.97111 1.48475 1.29406 1.41864 1.12429 1.19880 0.84317 0.80659 0.86276 1.90804 1.70582 1.63763 1.16521 1.22844 0.92196 0.81709 1.03004 0.80660 1.93002 1.93151 1.31872 1.95707 1.20304 0.84456 0.74748 0.80968 1.93254 1.93205 1.33240 1.95116 1.93264 1.56257 1.80551 1.84317 1.93276 1.92419 1.83387 1.45858 1.23622 1.02522 1.01843 0.77995 1.21500 0.92365 0.93674 0.86406 0.91390 1.42369 1.86849 1.05569 1.00826 1.19557 1.41014 0.92525 0.84373 0.90170 1.25432 1.03357 0.95713 1.01199 1.69784 1.58366 1.03412 1.29850 0.85358 0.78130 0.76817 0.80298 1.22758 1.20675 1.20320 0.93253 0.90779 0.92024 0.90086 0.90177 0.90163 0.89540 0.78877 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.16 71.98 0.66 -2.43 16 2 C -0.10 -2.68 3.19 -9.60 -0.03 -2.71 16 3 H 0.09 2.30 7.99 -2.39 -0.02 2.28 16 4 C 0.12 2.81 6.46 86.73 0.56 3.37 16 5 N -0.59 -15.39 3.33 -811.69 -2.70 -18.09 16 6 C 0.50 13.97 6.93 87.66 0.61 14.58 16 7 O -0.54 -18.04 15.93 -3.03 -0.05 -18.09 16 8 C 0.04 0.98 3.43 29.85 0.10 1.09 16 9 H 0.18 2.98 6.49 -2.38 -0.02 2.96 16 10 F -0.16 -3.86 17.03 44.97 0.77 -3.10 16 11 C 0.45 10.68 2.86 71.98 0.21 10.88 16 12 F -0.17 -4.00 17.03 44.97 0.77 -3.24 16 13 F -0.16 -3.57 17.30 44.97 0.78 -2.79 16 14 F -0.17 -4.65 15.95 44.97 0.72 -3.93 16 15 C 0.07 1.78 5.95 86.85 0.52 2.30 16 16 C 0.17 5.46 3.14 46.39 0.15 5.60 16 17 H 0.07 2.23 8.02 -2.39 -0.02 2.21 16 18 N -0.72 -30.42 5.26 -316.38 -1.66 -32.08 16 19 C -0.24 -11.77 9.97 84.03 0.84 -10.93 16 20 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 22 N -0.96 -54.15 13.06 21.65 0.28 -53.87 16 23 Si 0.96 42.43 29.55 68.60 2.03 44.46 16 24 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.36 8.06 -2.39 -0.02 1.34 16 30 H 0.08 1.87 7.76 -2.39 -0.02 1.85 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.09 2.17 7.25 -2.38 -0.02 2.15 16 34 H 0.38 17.53 7.73 -92.71 -0.72 16.82 16 35 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 Total: -1.00 -59.29 314.37 5.42 -53.87 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.42 Total: 17.95 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 4.07 Total: 18.89 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -4.08 Total: -104.04 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.05 Total: -18.09 kcal Atomic # 9 Polarization: -16.08 SS G_CDS: 3.03 Total: -13.05 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -59.29 5.42 -53.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082525507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.226 kcal (2) G-P(sol) polarization free energy of solvation -59.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds