Wall clock time and date at job start Tue Mar 31 2020 04:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48498 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47190 * 300.00033 * 3 2 1 6 6 H 1.48504 * 109.47265 * 59.99988 * 3 2 1 7 7 C 1.38813 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99525 * 163.08234 * 7 2 1 9 9 N 1.36928 * 120.00123 * 343.08253 * 7 2 1 10 10 C 1.46919 * 120.63301 * 151.83196 * 9 7 2 11 11 C 1.53198 * 108.77570 * 126.36842 * 10 9 7 12 12 C 1.53038 * 109.31345 * 54.63515 * 11 10 9 13 13 H 1.09002 * 109.45725 * 58.64180 * 12 11 10 14 14 N 1.46499 * 109.46182 * 178.61150 * 12 11 10 15 15 C 1.34775 * 120.00107 * 275.02872 * 14 12 11 16 16 O 1.21733 * 120.00124 * 0.02562 * 15 14 12 17 17 C 1.46379 * 119.99529 * 179.97438 * 15 14 12 18 18 C 1.33970 * 119.23617 * 359.97438 * 17 15 14 19 19 O 1.35003 * 121.68792 * 180.09009 * 18 17 15 20 20 C 1.43240 * 116.76505 * 343.07774 * 19 18 17 21 21 C 1.53553 * 108.08764 * 45.49057 * 20 19 18 22 22 O 1.36217 * 119.22630 * 180.24098 * 17 15 14 23 23 C 1.53037 * 109.52798 * 298.62837 * 12 11 10 24 24 H 1.09000 * 109.50050 * 181.31680 * 23 12 11 25 25 O 1.42895 * 109.50125 * 301.42082 * 23 12 11 26 26 C 1.46931 * 120.62953 * 331.80718 * 9 7 2 27 27 H 0.97006 * 120.00104 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.58949 * 6.58333 * 10 9 7 29 29 H 1.08998 * 109.58830 * 246.15701 * 10 9 7 30 30 H 1.08997 * 109.49492 * 294.68486 * 11 10 9 31 31 H 1.09002 * 109.52448 * 174.60325 * 11 10 9 32 32 H 0.97002 * 119.99463 * 95.02745 * 14 12 11 33 33 H 1.07997 * 119.15725 * 0.37115 * 18 17 15 34 34 H 1.09009 * 109.74144 * 165.13595 * 20 19 18 35 35 H 1.08999 * 109.74392 * 285.79255 * 20 19 18 36 36 H 1.08993 * 109.75797 * 61.47319 * 21 20 19 37 37 H 1.09006 * 109.75261 * 182.21872 * 21 20 19 38 38 H 0.96696 * 114.00411 * 180.02562 * 25 23 12 39 39 H 1.09000 * 109.58559 * 353.41992 * 26 9 7 40 40 H 1.09001 * 109.58437 * 113.70312 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2224 -0.2716 9 7 1.3701 -2.3622 0.3461 10 6 1.8139 -3.6528 -0.1977 11 6 2.0683 -4.6168 0.9654 12 6 0.8134 -4.7003 1.8373 13 1 -0.0270 -5.0408 1.2323 14 7 1.0417 -5.6467 2.9320 15 6 0.8378 -6.9646 2.7371 16 8 0.4644 -7.3687 1.6512 17 6 1.0665 -7.9102 3.8308 18 6 1.4789 -7.4489 5.0191 19 8 1.7066 -8.2766 6.0609 20 6 1.1462 -9.5920 5.9743 21 6 1.4337 -10.1411 4.5694 22 8 0.8603 -9.2392 3.6151 23 6 0.4990 -3.3185 2.4151 24 1 -0.3813 -3.3833 3.0547 25 8 1.6133 -2.8571 3.1815 26 6 0.2264 -2.3400 1.2684 27 1 -0.4850 0.8401 -0.0004 28 1 2.7344 -3.5134 -0.7646 29 1 1.0402 -4.0609 -0.8480 30 1 2.9034 -4.2525 1.5638 31 1 2.3056 -5.6059 0.5736 32 1 1.3396 -5.3247 3.7972 33 1 1.6286 -6.3871 5.1482 34 1 1.6050 -10.2378 6.7230 35 1 0.0697 -9.5451 6.1387 36 1 2.5103 -10.2070 4.4128 37 1 0.9838 -11.1280 4.4604 38 1 1.4834 -1.9852 3.5788 39 1 0.0994 -1.3342 1.6688 40 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090027930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:06 Heat of formation + Delta-G solvation = -133.946212 kcal Electronic energy + Delta-G solvation = -24995.155480 eV Core-core repulsion = 21197.164640 eV Total energy + Delta-G solvation = -3797.990840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -42.15259 -40.88481 -39.38582 -37.98525 -36.48646 -35.80926 -34.22781 -33.01137 -31.21154 -30.73850 -29.56419 -26.99702 -26.27909 -24.26535 -23.67407 -22.59420 -21.19482 -20.44806 -19.56193 -19.32799 -18.92064 -17.45422 -17.38120 -17.04930 -16.84444 -16.44467 -16.06486 -15.75928 -15.63374 -15.40770 -15.32469 -15.18879 -14.95764 -14.62813 -14.25061 -13.81852 -13.64462 -13.21643 -13.10121 -12.78467 -12.64240 -12.34820 -12.26354 -12.04358 -11.94859 -11.81779 -11.69391 -11.43554 -11.01317 -10.73487 -10.58204 -10.16461 -9.27419 -8.66461 -7.86375 -5.30734 0.22036 1.48063 1.51856 1.54584 1.62099 2.07564 2.22348 2.53238 2.71391 3.26621 3.39606 3.39944 3.62625 3.72833 3.86669 3.94833 3.98642 4.01316 4.25877 4.34703 4.38497 4.44833 4.61037 4.63286 4.71552 4.80913 4.88292 4.94958 5.07184 5.18887 5.38310 5.44176 5.57572 5.67241 5.75835 6.19752 6.38805 6.55292 6.93780 7.11665 7.16424 7.83656 8.37040 9.20254 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.036688 B = 0.003345 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.018265 B = 8369.836611 C = 8692.748667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.285 1.285 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.598 5.598 10 C 0.145 3.855 11 C -0.121 4.121 12 C 0.170 3.830 13 H 0.075 0.925 14 N -0.696 5.696 15 C 0.569 3.431 16 O -0.577 6.577 17 C -0.098 4.098 18 C 0.040 3.960 19 O -0.305 6.305 20 C 0.011 3.989 21 C 0.010 3.990 22 O -0.321 6.321 23 C 0.093 3.907 24 H 0.074 0.926 25 O -0.560 6.560 26 C 0.149 3.851 27 H 0.251 0.749 28 H 0.056 0.944 29 H 0.011 0.989 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.414 0.586 33 H 0.201 0.799 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.388 0.612 39 H 0.075 0.925 40 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -16.464 16.540 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.241 4.241 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.225 1.225 6 H -0.211 1.211 7 C -0.384 4.384 8 H 0.079 0.921 9 N -0.321 5.321 10 C 0.019 3.981 11 C -0.161 4.161 12 C 0.066 3.934 13 H 0.094 0.906 14 N -0.349 5.349 15 C 0.358 3.642 16 O -0.458 6.458 17 C -0.147 4.147 18 C -0.027 4.027 19 O -0.217 6.217 20 C -0.064 4.064 21 C -0.065 4.065 22 O -0.236 6.236 23 C 0.031 3.969 24 H 0.091 0.909 25 O -0.367 6.367 26 C 0.022 3.978 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.253 0.747 33 H 0.217 0.783 34 H 0.176 0.824 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.165 0.835 38 H 0.237 0.763 39 H 0.093 0.907 40 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 2.472 -17.251 15.615 23.400 hybrid contribution -0.032 1.495 -0.082 1.498 sum 2.441 -15.756 15.533 22.260 Atomic orbital electron populations 1.70167 1.06475 1.25828 1.55683 1.25706 0.95991 1.01149 1.01298 0.85212 0.78461 0.79951 0.76774 1.19557 1.22483 1.21134 1.19456 0.92632 0.85778 1.40526 0.92055 1.44108 1.35730 1.01988 1.50270 1.20962 0.97472 0.86033 0.93672 1.22096 0.97961 0.98509 0.97568 1.20775 0.98240 0.86678 0.87741 0.90647 1.45756 1.68319 1.04639 1.16215 1.17595 0.77334 0.82418 0.86837 1.90818 1.48335 1.78842 1.27788 1.20113 1.15015 0.85478 0.94063 1.23456 0.97789 0.96981 0.84445 1.86109 1.71329 1.25076 1.39164 1.24062 1.01059 0.82201 0.99032 1.24026 1.00364 0.94114 0.87964 1.86357 1.73345 1.12440 1.51489 1.22485 0.89026 0.92342 0.93019 0.90873 1.86306 1.41497 1.39705 1.69204 1.21342 0.88361 0.98453 0.89602 0.94008 0.92496 0.97117 0.91257 0.92607 0.74706 0.78255 0.82436 0.89415 0.90171 0.83480 0.76267 0.90697 0.97740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.25 11.20 21.65 0.24 -53.01 16 2 C -0.05 -2.50 4.92 84.86 0.42 -2.08 16 3 Si 0.97 43.69 29.59 68.60 2.03 45.72 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.25 -13.70 9.58 84.04 0.81 -12.89 16 8 H 0.06 3.31 7.88 -2.91 -0.02 3.28 16 9 N -0.60 -29.58 2.93 -699.10 -2.05 -31.63 16 10 C 0.14 6.38 6.52 86.37 0.56 6.94 16 11 C -0.12 -4.58 5.51 30.67 0.17 -4.41 16 12 C 0.17 5.94 2.20 45.02 0.10 6.04 16 13 H 0.08 2.96 7.58 -2.39 -0.02 2.94 16 14 N -0.70 -19.81 4.98 -446.65 -2.22 -22.04 16 15 C 0.57 18.45 7.69 86.36 0.66 19.12 16 16 O -0.58 -24.21 16.58 10.09 0.17 -24.04 16 17 C -0.10 -2.55 6.61 23.42 0.15 -2.39 16 18 C 0.04 0.76 10.57 66.85 0.71 1.46 16 19 O -0.30 -4.94 10.47 -69.25 -0.73 -5.66 16 20 C 0.01 0.11 7.29 72.17 0.53 0.64 16 21 C 0.01 0.14 7.31 72.17 0.53 0.67 16 22 O -0.32 -8.48 10.28 -71.80 -0.74 -9.22 16 23 C 0.09 3.17 3.38 30.67 0.10 3.27 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 O -0.56 -17.74 12.08 -148.98 -1.80 -19.54 16 26 C 0.15 6.76 4.95 86.36 0.43 7.18 16 27 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 28 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 2.65 7.61 -2.39 -0.02 2.63 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.41 9.18 6.09 -92.71 -0.56 8.61 16 33 H 0.20 2.73 6.08 -2.91 -0.02 2.71 16 34 H 0.16 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.15 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.39 10.45 9.08 -74.06 -0.67 9.78 16 39 H 0.07 3.71 6.06 -2.39 -0.01 3.70 16 40 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -74.23 327.74 -0.09 -74.32 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.15 Total: 21.54 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 5.16 Total: 23.55 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.03 Total: -106.67 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -3.10 Total: -58.46 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.23 -0.09 -74.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090027930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.628 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds