Wall clock time and date at job start Tue Mar 31 2020 04:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00208 * 2 1 4 4 H 1.48501 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46802 * 299.99903 * 3 2 1 6 6 H 1.48502 * 109.47004 * 59.99876 * 3 2 1 7 7 C 1.37877 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00307 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99911 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.88752 * 59.29274 * 9 7 2 11 11 C 1.55149 * 111.00848 * 183.17597 * 9 7 2 12 12 C 1.54327 * 102.94597 * 153.61136 * 11 9 7 13 13 N 1.47024 * 107.26790 * 337.81343 * 12 11 9 14 14 C 1.34783 * 125.64509 * 178.97989 * 13 12 11 15 15 O 1.21349 * 119.99651 * 179.97438 * 14 13 12 16 16 C 1.49444 * 119.99861 * 359.96774 * 14 13 12 17 17 O 1.21353 * 120.00594 * 0.02562 * 16 14 13 18 18 N 1.34783 * 120.00047 * 180.02562 * 16 14 13 19 19 C 1.46498 * 120.00517 * 180.02562 * 18 16 14 20 20 H 1.09005 * 110.45015 * 325.70037 * 19 18 16 21 21 C 1.54501 * 110.51259 * 203.09556 * 19 18 16 22 22 C 1.54481 * 104.06454 * 241.35278 * 21 19 18 23 23 O 1.44430 * 104.79999 * 23.97997 * 22 21 19 24 24 C 1.44786 * 105.29378 * 319.45430 * 23 22 21 25 25 C 1.47524 * 108.71771 * 358.93887 * 13 12 11 26 26 H 0.97002 * 119.99390 * 0.02562 * 1 2 3 27 27 H 0.96700 * 114.00311 * 300.70646 * 10 9 7 28 28 H 1.08998 * 110.72506 * 271.97695 * 11 9 7 29 29 H 1.09005 * 110.71930 * 35.07701 * 11 9 7 30 30 H 1.09005 * 109.88171 * 97.22529 * 12 11 9 31 31 H 1.08999 * 109.88663 * 218.39405 * 12 11 9 32 32 H 0.97006 * 119.99429 * 0.02562 * 18 16 14 33 33 H 1.08998 * 110.51340 * 0.02562 * 21 19 18 34 34 H 1.08998 * 110.51236 * 122.57066 * 21 19 18 35 35 H 1.09002 * 110.37352 * 142.80593 * 22 21 19 36 36 H 1.08996 * 110.37394 * 265.03697 * 22 21 19 37 37 H 1.08996 * 110.42469 * 281.77399 * 24 23 22 38 38 H 1.09003 * 110.48323 * 159.32710 * 24 23 22 39 39 H 1.09002 * 110.36567 * 265.31052 * 25 13 12 40 40 H 1.09002 * 110.41117 * 142.95688 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4063 -2.5997 -1.1477 11 6 2.2253 -3.7039 0.0814 12 6 1.3636 -4.8018 0.7399 13 7 0.2754 -4.1275 1.4630 14 6 -0.7055 -4.7401 2.1552 15 8 -1.5554 -4.0802 2.7162 16 6 -0.7464 -6.2320 2.2318 17 8 0.1037 -6.8920 1.6711 18 7 -1.7276 -6.8447 2.9235 19 6 -1.7675 -8.3072 2.9991 20 1 -1.4068 -8.7466 2.0690 21 6 -3.2007 -8.7944 3.3081 22 6 -3.0630 -9.5342 4.6572 23 8 -1.8867 -8.9648 5.2719 24 6 -0.9303 -8.8103 4.1959 25 6 0.4353 -2.6693 1.3064 26 1 -0.4849 0.8401 -0.0004 27 1 -0.2523 -1.8948 -1.2145 28 1 2.5441 -4.0097 -0.9150 29 1 3.0873 -3.4617 0.7032 30 1 0.9492 -5.4571 -0.0263 31 1 1.9695 -5.3802 1.4373 32 1 -2.4074 -6.3171 3.3714 33 1 -3.8798 -7.9472 3.4041 34 1 -3.5487 -9.4748 2.5308 35 1 -3.9402 -9.3557 5.2791 36 1 -2.9272 -10.6030 4.4918 37 1 -0.4666 -9.7678 3.9588 38 1 -0.1707 -8.0757 4.4632 39 1 0.9832 -2.2547 2.1526 40 1 -0.5381 -2.1882 1.2112 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118217594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:31 Heat of formation + Delta-G solvation = -154.187283 kcal Electronic energy + Delta-G solvation = -24813.651729 eV Core-core repulsion = 21014.783171 eV Total energy + Delta-G solvation = -3798.868559 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64662 -39.51520 -38.21439 -37.19798 -34.93106 -34.09621 -32.22932 -31.22393 -30.24778 -29.00114 -27.93252 -25.92027 -24.19072 -23.12071 -22.10500 -21.01509 -19.84194 -19.50341 -17.48545 -17.21759 -17.07988 -16.36719 -16.29323 -15.67448 -15.60924 -15.15620 -14.86739 -14.49543 -14.20239 -13.98685 -13.29015 -13.08420 -12.96570 -12.80898 -12.35953 -12.31602 -12.03625 -11.88666 -11.67223 -11.55672 -11.43096 -11.09870 -11.08367 -10.80059 -10.58702 -10.47948 -10.27757 -10.21734 -9.41707 -9.25311 -9.18341 -8.72363 -8.43653 -7.92285 -6.32595 -4.41900 1.73455 2.56429 3.17957 3.27039 3.30567 3.51588 3.66885 3.83226 4.14324 4.24060 4.49166 4.63660 4.67188 4.77934 4.95313 4.98159 5.25392 5.31265 5.42426 5.47051 5.53557 5.56955 5.77568 5.82902 6.03935 6.15094 6.30498 6.44019 6.49157 6.71444 6.76254 6.81891 7.13025 7.20006 7.29174 7.70360 7.81672 7.97198 8.01425 8.40961 8.62562 9.27230 9.37618 10.74802 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.036156 B = 0.003265 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.234468 B = 8572.991838 C = 8823.996223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.122 4.122 12 C 0.112 3.888 13 N -0.573 5.573 14 C 0.507 3.493 15 O -0.537 6.537 16 C 0.512 3.488 17 O -0.516 6.516 18 N -0.699 5.699 19 C 0.112 3.888 20 H 0.108 0.892 21 C -0.163 4.163 22 C 0.044 3.956 23 O -0.373 6.373 24 C 0.035 3.965 25 C 0.091 3.909 26 H 0.270 0.730 27 H 0.383 0.617 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.414 0.586 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 -16.045 5.887 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.160 4.160 12 C -0.011 4.011 13 N -0.305 5.305 14 C 0.289 3.711 15 O -0.416 6.416 16 C 0.293 3.707 17 O -0.391 6.391 18 N -0.354 5.354 19 C 0.006 3.994 20 H 0.126 0.874 21 C -0.201 4.201 22 C -0.033 4.033 23 O -0.292 6.292 24 C -0.043 4.043 25 C -0.030 4.030 26 H 0.080 0.920 27 H 0.234 0.766 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.251 0.749 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.132 -16.554 5.919 18.059 hybrid contribution -0.338 1.572 0.137 1.613 sum -4.470 -14.982 6.056 16.766 Atomic orbital electron populations 1.69656 1.06030 1.27920 1.49745 1.25098 0.95065 0.99863 0.93277 0.86321 0.80063 0.82589 0.77777 1.19537 1.20727 1.20758 1.21520 0.93792 0.89904 1.52226 0.91280 1.19632 0.86189 0.91959 0.81452 1.86107 1.51467 1.54938 1.46599 1.22713 0.97755 0.94982 1.00521 1.22146 0.88125 0.95327 0.95498 1.48685 1.24799 1.10284 1.46753 1.19522 0.82671 0.87495 0.81394 1.90731 1.38328 1.66191 1.46378 1.20498 0.81803 0.89470 0.78918 1.90727 1.37502 1.66736 1.44145 1.45836 1.29934 1.06581 1.53017 1.22397 0.95846 0.80658 1.00477 0.87418 1.23282 0.96192 1.01884 0.98740 1.23433 0.89582 0.97111 0.93180 1.89239 1.25026 1.83642 1.31273 1.23982 0.92602 1.01310 0.86438 1.23531 1.03140 0.75438 1.00857 0.91952 0.76580 0.90509 0.90349 0.91163 0.91738 0.74922 0.89456 0.89051 0.88718 0.91894 0.90913 0.88447 0.91381 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.40 10.69 55.43 0.59 -22.81 16 2 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 3 Si 0.91 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -13.72 8.25 -34.44 -0.28 -14.01 16 8 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 9 C 0.25 5.97 0.88 -89.63 -0.08 5.89 16 10 O -0.58 -14.78 13.17 -35.23 -0.46 -15.25 16 11 C -0.12 -2.46 6.13 -24.90 -0.15 -2.61 16 12 C 0.11 2.13 5.49 -3.06 -0.02 2.12 16 13 N -0.57 -12.07 3.33 -170.94 -0.57 -12.63 16 14 C 0.51 10.12 7.91 -11.59 -0.09 10.03 16 15 O -0.54 -11.72 16.74 5.50 0.09 -11.63 16 16 C 0.51 8.45 7.86 -11.59 -0.09 8.36 16 17 O -0.52 -9.01 13.80 5.49 0.08 -8.93 16 18 N -0.70 -9.01 5.09 -52.72 -0.27 -9.28 16 19 C 0.11 1.12 3.44 -66.37 -0.23 0.90 16 20 H 0.11 1.11 7.61 -51.93 -0.40 0.71 16 21 C -0.16 -1.18 6.85 -25.17 -0.17 -1.35 16 22 C 0.04 0.32 7.63 37.93 0.29 0.61 16 23 O -0.37 -4.06 11.66 -35.23 -0.41 -4.47 16 24 C 0.03 0.35 7.38 37.93 0.28 0.63 16 25 C 0.09 2.15 5.51 -2.47 -0.01 2.14 16 26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.38 9.97 7.25 45.56 0.33 10.30 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 30 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 31 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 32 H 0.41 5.10 7.82 -40.82 -0.32 4.78 16 33 H 0.09 0.63 7.68 -51.93 -0.40 0.23 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.13 8.06 -51.93 -0.42 0.71 16 39 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 40 H 0.09 2.33 7.48 -51.93 -0.39 1.94 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -29.48 331.98 -6.50 -35.97 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -4.87 Total: 14.60 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: -0.65 Total: 14.40 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.25 Total: -44.72 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.71 Total: -40.28 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.48 -6.50 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118217594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.214 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds