Wall clock time and date at job start Tue Mar 31 2020 04:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99728 * 2 1 4 4 H 1.48506 * 109.47181 * 269.99352 * 3 2 1 5 5 H 1.48503 * 109.47287 * 29.99564 * 3 2 1 6 6 H 1.48504 * 109.47290 * 149.99390 * 3 2 1 7 7 C 1.37877 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99858 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.88270 * 62.42439 * 9 7 2 11 11 C 1.55152 * 111.03595 * 186.32940 * 9 7 2 12 12 C 1.54339 * 103.02024 * 153.39829 * 11 9 7 13 13 N 1.47021 * 107.26320 * 338.14038 * 12 11 9 14 14 C 1.34777 * 125.64906 * 178.84912 * 13 12 11 15 15 O 1.21352 * 120.00198 * 179.69313 * 14 13 12 16 16 C 1.49449 * 120.00168 * 359.69125 * 14 13 12 17 17 O 1.21352 * 119.99633 * 0.02562 * 16 14 13 18 18 N 1.34767 * 120.00585 * 179.97438 * 16 14 13 19 19 C 1.46495 * 120.00441 * 180.02562 * 18 16 14 20 20 H 1.09005 * 110.43839 * 36.09368 * 19 18 16 21 21 C 1.54818 * 110.49055 * 158.77701 * 19 18 16 22 22 C 1.55000 * 102.09030 * 139.55917 * 21 19 18 23 23 O 1.44382 * 103.48861 * 322.97548 * 22 21 19 24 24 C 1.43745 * 106.97554 * 40.06459 * 23 22 21 25 25 C 1.47429 * 108.70740 * 358.58797 * 13 12 11 26 26 H 0.96994 * 119.99847 * 0.02562 * 1 2 3 27 27 H 0.96695 * 114.00715 * 297.57517 * 10 9 7 28 28 H 1.09003 * 110.71987 * 271.95146 * 11 9 7 29 29 H 1.08993 * 110.72021 * 35.05557 * 11 9 7 30 30 H 1.08996 * 109.99549 * 218.66630 * 12 11 9 31 31 H 1.08995 * 109.78200 * 97.49130 * 12 11 9 32 32 H 0.97002 * 120.00168 * 359.97438 * 18 16 14 33 33 H 1.08996 * 110.90598 * 257.75586 * 21 19 18 34 34 H 1.09001 * 110.90139 * 21.32690 * 21 19 18 35 35 H 1.08999 * 110.61711 * 204.48002 * 22 21 19 36 36 H 1.08997 * 110.62057 * 81.47966 * 22 21 19 37 37 H 1.08998 * 109.87927 * 92.91125 * 24 23 22 38 38 H 1.08997 * 109.87512 * 214.06102 * 24 23 22 39 39 H 1.08991 * 110.36831 * 143.19508 * 25 13 12 40 40 H 1.09006 * 110.36258 * 265.52361 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.4617 -2.6315 -1.1832 11 6 2.2192 -3.7010 0.1608 12 6 1.3288 -4.7801 0.8125 13 7 0.2055 -4.0865 1.4597 14 6 -0.8078 -4.6797 2.1212 15 8 -1.6824 -4.0046 2.6231 16 6 -0.8545 -6.1690 2.2367 17 8 0.0204 -6.8441 1.7352 18 7 -1.8674 -6.7623 2.8987 19 6 -1.9128 -8.2221 3.0123 20 1 -0.9066 -8.6269 3.1217 21 6 -2.8028 -8.6453 4.2064 22 6 -3.5641 -9.8651 3.6275 23 8 -3.8016 -9.4925 2.2530 24 6 -2.6111 -8.8373 1.7841 25 6 0.3745 -2.6342 1.2705 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2242 -1.9564 -1.2762 28 1 2.5844 -4.0343 -0.8106 29 1 3.0509 -3.4416 0.8158 30 1 1.8999 -5.3351 1.5567 31 1 0.9534 -5.4599 0.0477 32 1 -2.5662 -6.2226 3.3005 33 1 -2.1932 -8.9373 5.0615 34 1 -3.4942 -7.8476 4.4780 35 1 -4.5073 -10.0135 4.1533 36 1 -2.9482 -10.7627 3.6811 37 1 -1.9519 -9.5629 1.3076 38 1 -2.8749 -8.0520 1.0758 39 1 -0.5930 -2.1566 1.1163 40 1 0.8820 -2.1963 2.1301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118217596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:40 Heat of formation + Delta-G solvation = -153.899543 kcal Electronic energy + Delta-G solvation = -24797.827029 eV Core-core repulsion = 20998.970948 eV Total energy + Delta-G solvation = -3798.856081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.66177 -39.54533 -38.25846 -37.21440 -35.01135 -34.11671 -32.27110 -31.22122 -30.25683 -29.00913 -27.91917 -25.92091 -24.15576 -23.08005 -22.17716 -21.07513 -19.85504 -19.51710 -17.49149 -17.20568 -17.15680 -16.50803 -16.25270 -15.66150 -15.52028 -15.17859 -14.83951 -14.50069 -14.21738 -13.96590 -13.28508 -13.09693 -12.99807 -12.85236 -12.59557 -12.32508 -12.10494 -11.86706 -11.68587 -11.54442 -11.36904 -11.11957 -11.06665 -10.82617 -10.60502 -10.48994 -10.23762 -10.11012 -9.40791 -9.31015 -9.20151 -8.72809 -8.43504 -7.94179 -6.31824 -4.41455 1.71213 2.52654 3.19093 3.26787 3.29119 3.50075 3.61383 3.82620 4.10753 4.24100 4.51255 4.61855 4.66184 4.76569 4.92596 4.95914 5.30228 5.32102 5.43096 5.46164 5.52998 5.61174 5.76518 5.80087 6.03018 6.15000 6.29845 6.48804 6.49769 6.70645 6.75584 6.81464 7.10947 7.18123 7.28802 7.70098 7.79540 7.97866 7.99995 8.39194 8.62839 9.25918 9.34489 10.75392 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.037048 B = 0.003249 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.593560 B = 8615.115813 C = 8857.169319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.581 6.581 11 C -0.121 4.121 12 C 0.111 3.889 13 N -0.573 5.573 14 C 0.507 3.493 15 O -0.537 6.537 16 C 0.511 3.489 17 O -0.515 6.515 18 N -0.701 5.701 19 C 0.112 3.888 20 H 0.107 0.893 21 C -0.162 4.162 22 C 0.048 3.952 23 O -0.376 6.376 24 C 0.035 3.965 25 C 0.092 3.908 26 H 0.271 0.729 27 H 0.381 0.619 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 -15.428 7.634 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.389 6.389 11 C -0.159 4.159 12 C -0.012 4.012 13 N -0.305 5.305 14 C 0.289 3.711 15 O -0.416 6.416 16 C 0.293 3.707 17 O -0.389 6.389 18 N -0.356 5.356 19 C 0.007 3.993 20 H 0.125 0.875 21 C -0.200 4.200 22 C -0.029 4.029 23 O -0.294 6.294 24 C -0.043 4.043 25 C -0.029 4.029 26 H 0.081 0.919 27 H 0.231 0.769 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.251 0.749 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.640 -16.016 7.345 17.992 hybrid contribution -0.073 1.682 0.475 1.750 sum -3.713 -14.334 7.820 16.745 Atomic orbital electron populations 1.69708 1.06001 1.27988 1.49508 1.25092 0.95065 0.99823 0.93292 0.86383 0.79753 0.82312 0.78344 1.20358 1.21015 1.19678 1.21459 0.93722 0.89894 1.52430 0.91370 1.19643 0.86591 0.91888 0.81105 1.86130 1.51541 1.57088 1.44181 1.22709 0.97630 0.95153 1.00450 1.22155 0.87270 0.95183 0.96558 1.48680 1.21959 1.10544 1.49328 1.19504 0.82848 0.87509 0.81219 1.90733 1.37699 1.65111 1.48079 1.20514 0.81891 0.89548 0.78745 1.90732 1.37311 1.65702 1.45162 1.45818 1.27084 1.06720 1.55948 1.22433 1.01401 0.80548 0.94902 0.87549 1.23447 0.99197 0.99558 0.97839 1.23540 1.00690 0.96074 0.82636 1.88922 1.36422 1.77521 1.26566 1.23691 0.86974 0.97124 0.96498 1.23508 1.03245 0.75541 1.00588 0.91946 0.76931 0.90500 0.90353 0.91734 0.91137 0.74903 0.89027 0.89376 0.88477 0.91703 0.91122 0.89083 0.89050 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.34 10.69 55.43 0.59 -22.75 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 3 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.72 8.27 -34.44 -0.28 -14.00 16 8 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 9 C 0.25 5.94 0.87 -89.62 -0.08 5.86 16 10 O -0.58 -14.66 13.16 -35.23 -0.46 -15.12 16 11 C -0.12 -2.44 6.13 -24.89 -0.15 -2.60 16 12 C 0.11 2.11 5.49 -3.06 -0.02 2.09 16 13 N -0.57 -11.97 3.33 -171.02 -0.57 -12.54 16 14 C 0.51 10.00 7.91 -11.59 -0.09 9.91 16 15 O -0.54 -11.57 16.73 5.49 0.09 -11.48 16 16 C 0.51 8.35 7.85 -11.59 -0.09 8.26 16 17 O -0.51 -8.93 13.83 5.49 0.08 -8.86 16 18 N -0.70 -8.82 5.04 -52.76 -0.27 -9.08 16 19 C 0.11 1.13 3.35 -66.40 -0.22 0.91 16 20 H 0.11 1.09 7.66 -51.93 -0.40 0.69 16 21 C -0.16 -1.16 6.87 -24.72 -0.17 -1.33 16 22 C 0.05 0.34 7.72 38.21 0.29 0.64 16 23 O -0.38 -4.12 11.52 -35.23 -0.41 -4.53 16 24 C 0.04 0.38 7.50 37.73 0.28 0.66 16 25 C 0.09 2.16 5.38 -2.53 -0.01 2.14 16 26 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.38 9.79 7.56 45.56 0.34 10.13 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 30 H 0.06 1.12 7.71 -51.93 -0.40 0.72 16 31 H 0.07 1.35 7.57 -51.93 -0.39 0.96 16 32 H 0.41 4.88 7.82 -40.82 -0.32 4.56 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.61 7.74 -51.93 -0.40 0.21 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16 39 H 0.09 2.38 7.33 -51.93 -0.38 2.00 16 40 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -29.33 331.99 -6.45 -35.78 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -4.85 Total: 14.30 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -0.64 Total: 14.26 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.24 Total: -44.37 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.70 Total: -39.98 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.33 -6.45 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118217596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.118 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds