Wall clock time and date at job start Tue Mar 31 2020 04:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99728 * 2 1 4 4 H 1.48506 * 109.47181 * 269.99352 * 3 2 1 5 5 H 1.48503 * 109.47287 * 29.99564 * 3 2 1 6 6 H 1.48504 * 109.47290 * 149.99390 * 3 2 1 7 7 C 1.37877 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99858 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.88270 * 62.42439 * 9 7 2 11 11 C 1.55152 * 111.03595 * 186.32940 * 9 7 2 12 12 C 1.54339 * 103.02024 * 153.39829 * 11 9 7 13 13 N 1.47021 * 107.26320 * 338.14038 * 12 11 9 14 14 C 1.34777 * 125.64906 * 178.84912 * 13 12 11 15 15 O 1.21352 * 120.00198 * 179.69313 * 14 13 12 16 16 C 1.49449 * 120.00168 * 359.69125 * 14 13 12 17 17 O 1.21352 * 119.99633 * 0.02562 * 16 14 13 18 18 N 1.34767 * 120.00585 * 179.97438 * 16 14 13 19 19 C 1.46495 * 120.00441 * 180.02562 * 18 16 14 20 20 H 1.09005 * 110.43839 * 36.09368 * 19 18 16 21 21 C 1.54818 * 110.49055 * 158.77701 * 19 18 16 22 22 C 1.55000 * 102.09030 * 139.55917 * 21 19 18 23 23 O 1.44382 * 103.48861 * 322.97548 * 22 21 19 24 24 C 1.43745 * 106.97554 * 40.06459 * 23 22 21 25 25 C 1.47429 * 108.70740 * 358.58797 * 13 12 11 26 26 H 0.96994 * 119.99847 * 0.02562 * 1 2 3 27 27 H 0.96695 * 114.00715 * 297.57517 * 10 9 7 28 28 H 1.09003 * 110.71987 * 271.95146 * 11 9 7 29 29 H 1.08993 * 110.72021 * 35.05557 * 11 9 7 30 30 H 1.08996 * 109.99549 * 218.66630 * 12 11 9 31 31 H 1.08995 * 109.78200 * 97.49130 * 12 11 9 32 32 H 0.97002 * 120.00168 * 359.97438 * 18 16 14 33 33 H 1.08996 * 110.90598 * 257.75586 * 21 19 18 34 34 H 1.09001 * 110.90139 * 21.32690 * 21 19 18 35 35 H 1.08999 * 110.61711 * 204.48002 * 22 21 19 36 36 H 1.08997 * 110.62057 * 81.47966 * 22 21 19 37 37 H 1.08998 * 109.87927 * 92.91125 * 24 23 22 38 38 H 1.08997 * 109.87512 * 214.06102 * 24 23 22 39 39 H 1.08991 * 110.36831 * 143.19508 * 25 13 12 40 40 H 1.09006 * 110.36258 * 265.52361 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.4617 -2.6315 -1.1832 11 6 2.2192 -3.7010 0.1608 12 6 1.3288 -4.7801 0.8125 13 7 0.2055 -4.0865 1.4597 14 6 -0.8078 -4.6797 2.1212 15 8 -1.6824 -4.0046 2.6231 16 6 -0.8545 -6.1690 2.2367 17 8 0.0204 -6.8441 1.7352 18 7 -1.8674 -6.7623 2.8987 19 6 -1.9128 -8.2221 3.0123 20 1 -0.9066 -8.6269 3.1217 21 6 -2.8028 -8.6453 4.2064 22 6 -3.5641 -9.8651 3.6275 23 8 -3.8016 -9.4925 2.2530 24 6 -2.6111 -8.8373 1.7841 25 6 0.3745 -2.6342 1.2705 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2242 -1.9564 -1.2762 28 1 2.5844 -4.0343 -0.8106 29 1 3.0509 -3.4416 0.8158 30 1 1.8999 -5.3351 1.5567 31 1 0.9534 -5.4599 0.0477 32 1 -2.5662 -6.2226 3.3005 33 1 -2.1932 -8.9373 5.0615 34 1 -3.4942 -7.8476 4.4780 35 1 -4.5073 -10.0135 4.1533 36 1 -2.9482 -10.7627 3.6811 37 1 -1.9519 -9.5629 1.3076 38 1 -2.8749 -8.0520 1.0758 39 1 -0.5930 -2.1566 1.1163 40 1 0.8820 -2.1963 2.1301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118217596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:36 Heat of formation + Delta-G solvation = -177.871455 kcal Electronic energy + Delta-G solvation = -24798.866529 eV Core-core repulsion = 20998.970948 eV Total energy + Delta-G solvation = -3799.895581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -41.95705 -40.66935 -39.59859 -38.87328 -36.40099 -35.59923 -34.24708 -32.01585 -31.96451 -29.89585 -29.62461 -27.65709 -25.66426 -24.09053 -23.32870 -22.07212 -21.56855 -20.95755 -19.17137 -18.80980 -18.25958 -17.58105 -17.40151 -17.07663 -17.04396 -16.50461 -16.27576 -15.96952 -15.67192 -15.05368 -14.85086 -14.67898 -14.62503 -13.98270 -13.91082 -13.53042 -13.36661 -13.28910 -12.97315 -12.84926 -12.73208 -12.55071 -12.49024 -12.36492 -12.22901 -12.11363 -11.93883 -11.22392 -10.89622 -10.77463 -10.59721 -10.35231 -10.31106 -9.66156 -8.25634 -6.42495 0.28659 1.20354 1.43871 1.46035 1.55222 2.06484 2.36017 2.45899 2.94217 3.00445 3.23417 3.43310 3.76428 3.77043 3.99108 4.04846 4.08175 4.14216 4.27619 4.31699 4.55016 4.65667 4.68256 4.73116 4.82976 4.87790 4.94182 4.96486 5.05404 5.13000 5.20828 5.32814 5.43070 5.73993 5.77519 5.94870 6.05788 6.34485 6.57317 6.66729 6.87187 7.26028 7.34346 8.79970 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.037048 B = 0.003249 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.593560 B = 8615.115813 C = 8857.169319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.115 4.115 12 C 0.119 3.881 13 N -0.582 5.582 14 C 0.501 3.499 15 O -0.561 6.561 16 C 0.520 3.480 17 O -0.525 6.525 18 N -0.683 5.683 19 C 0.109 3.891 20 H 0.111 0.889 21 C -0.153 4.153 22 C 0.043 3.957 23 O -0.398 6.398 24 C 0.036 3.964 25 C 0.106 3.894 26 H 0.270 0.730 27 H 0.374 0.626 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.418 0.582 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.227 -16.904 8.767 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.003 4.003 13 N -0.314 5.314 14 C 0.284 3.716 15 O -0.442 6.442 16 C 0.300 3.700 17 O -0.401 6.401 18 N -0.337 5.337 19 C 0.004 3.996 20 H 0.129 0.871 21 C -0.191 4.191 22 C -0.033 4.033 23 O -0.318 6.318 24 C -0.042 4.042 25 C -0.016 4.016 26 H 0.079 0.921 27 H 0.223 0.777 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.256 0.744 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.051 -17.539 8.497 19.726 hybrid contribution -0.344 2.088 0.151 2.121 sum -3.394 -15.451 8.648 18.029 Atomic orbital electron populations 1.69820 1.07109 1.28507 1.49923 1.25814 0.95778 1.02775 0.92978 0.85443 0.78732 0.78578 0.78201 1.20219 1.21069 1.18934 1.21756 0.94009 0.90932 1.52601 0.91173 1.19879 0.87145 0.93199 0.80591 1.86123 1.51508 1.56812 1.45086 1.22720 0.97394 0.93756 1.01436 1.22177 0.86600 0.94586 0.96941 1.48715 1.23069 1.09580 1.50025 1.20222 0.81917 0.89310 0.80158 1.90709 1.38379 1.66252 1.48820 1.19802 0.82932 0.87582 0.79643 1.90727 1.38062 1.65147 1.46123 1.45812 1.25693 1.08076 1.54123 1.22688 1.02339 0.78346 0.96183 0.87085 1.23472 0.98890 0.99519 0.97211 1.23808 1.02052 0.96565 0.80875 1.88903 1.36547 1.77630 1.28672 1.23606 0.87215 0.96876 0.96472 1.23060 1.01171 0.77227 1.00116 0.92053 0.77729 0.89663 0.88890 0.89498 0.91188 0.74369 0.86631 0.89073 0.86733 0.90055 0.90476 0.91097 0.92357 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.78 10.69 21.45 0.23 -48.55 16 2 C 0.03 1.42 5.29 84.65 0.45 1.87 16 3 Si 0.97 41.05 29.54 68.60 2.03 43.08 16 4 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.55 -28.42 8.27 25.60 0.21 -28.21 16 8 H 0.07 3.48 7.79 -2.91 -0.02 3.46 16 9 C 0.23 11.19 0.87 -10.15 -0.01 11.18 16 10 O -0.59 -30.18 13.16 -148.98 -1.96 -32.14 16 11 C -0.12 -4.52 6.13 31.79 0.19 -4.32 16 12 C 0.12 4.38 5.49 86.73 0.48 4.85 16 13 N -0.58 -24.34 3.33 -813.34 -2.70 -27.05 16 14 C 0.50 19.74 7.91 87.27 0.69 20.43 16 15 O -0.56 -24.51 16.73 -3.25 -0.05 -24.57 16 16 C 0.52 16.44 7.85 87.27 0.69 17.12 16 17 O -0.52 -17.40 13.83 -3.25 -0.05 -17.44 16 18 N -0.68 -16.23 5.04 -439.19 -2.21 -18.44 16 19 C 0.11 1.96 3.35 45.98 0.15 2.11 16 20 H 0.11 1.98 7.66 -2.38 -0.02 1.96 16 21 C -0.15 -1.73 6.87 31.90 0.22 -1.51 16 22 C 0.04 0.50 7.72 72.67 0.56 1.06 16 23 O -0.40 -8.09 11.52 -148.98 -1.72 -9.80 16 24 C 0.04 0.74 7.50 72.35 0.54 1.28 16 25 C 0.11 5.11 5.38 86.85 0.47 5.58 16 26 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.37 19.90 7.56 -74.06 -0.56 19.34 16 28 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.09 3.34 8.03 -2.39 -0.02 3.32 16 30 H 0.09 2.83 7.71 -2.39 -0.02 2.81 16 31 H 0.07 2.60 7.57 -2.39 -0.02 2.58 16 32 H 0.42 9.34 7.82 -92.71 -0.73 8.61 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 1.01 7.74 -2.39 -0.02 0.99 16 35 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.71 7.93 -2.39 -0.02 1.69 16 39 H 0.06 3.17 7.33 -2.39 -0.02 3.15 16 40 H 0.06 2.81 8.03 -2.38 -0.02 2.79 16 Total: -1.00 -63.19 331.99 -2.00 -65.19 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.20 Total: 38.27 kcal Atomic # 6 Polarization: 26.80 SS G_CDS: 4.64 Total: 31.45 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -4.69 Total: -94.04 kcal Atomic # 8 Polarization: -80.17 SS G_CDS: -3.78 Total: -83.95 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -63.19 -2.00 -65.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118217596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.680 kcal (2) G-P(sol) polarization free energy of solvation -63.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds